mRNA_H-elongata_contig51877.12468.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI) HSP 1 Score: 118 bits (295), Expect = 5.050e-30 Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
MV+VKPFRGLRPPPEMAAA+S+PPYDVI+SDEAREL+K GETSFLR+NKPEVDLP E+NQYDVQV
Sbjct: 1 MVRVKPFRGLRPPPEMAAALSAPPYDVINSDEARELMKTAGETSFLRVNKPEVDLPPEINQYDVQV 66
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A836CBS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS0_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 9.800e-18 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
MV+V+PF RPPPE+A V++PPYDV+DSDEAR+ + +FLR+NKPEVDLP ++QYD V
Sbjct: 1 MVRVQPFNAYRPPPEIAREVAAPPYDVLDSDEARDACSRLSTKTFLRVNKPEVDLPTHISQYDTAV 66
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A7V5LI70_9BACT (DUF1015 family protein (Fragment) n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5LI70_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 2.690e-16 Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
M +KPFRGLRP E+A V+SPPYDV+ S+EARE+ K SFL INKPE+DLP E + YD V
Sbjct: 1 MAVIKPFRGLRPKKELAEKVASPPYDVLSSEEAREMAK-NNPYSFLHINKPEIDLPPETDIYDETV 65
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A257U5E2_9BACT (Uncharacterized protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A257U5E2_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 4.050e-15 Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
M V+PFR LRP E+A V++PPYDVI+SDEARE+ K E SFL INKPE+DLP EV+ YD +V
Sbjct: 1 MSDVRPFRALRPRSELAERVAAPPYDVINSDEAREMAKG-NEISFLHINKPEIDLPPEVSLYDDRV 65
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A7V6DEF7_9BACT (DUF1015 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V6DEF7_9BACT) HSP 1 Score: 77.0 bits (188), Expect = 5.570e-15 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
M ++PFR LRP PE+AA V++PPYDVI S+EAREL E SFL + KPE+DLP +VN YD +V
Sbjct: 1 MSDIRPFRALRPRPELAAKVAAPPYDVISSEEARELA-AGNELSFLHVTKPEIDLPPDVNLYDDRV 65
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A661X934_9BACT (DUF1015 domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A661X934_9BACT) HSP 1 Score: 77.0 bits (188), Expect = 5.600e-15 Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYD 189
M K+KPFRGLRP PE+A V+SPPYDV++++EAR + K SFL +NKPE+DLP N YD
Sbjct: 1 MAKIKPFRGLRPKPELAEKVASPPYDVLNTEEARAMAKD-NPYSFLHVNKPEIDLPEGTNLYD 62
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: W7TNQ3_9STRA (Uncharacterized conserved protein UCP033563 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNQ3_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.140e-15 Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
MVKV PF+ RPP +A+ V++PPYDVI SDEAR L E SFLR+NKPE+DLP ++ YD++V
Sbjct: 1 MVKVLPFKAYRPPAALASTVAAPPYDVISSDEARRLADGK-EDSFLRVNKPEIDLPASLSSYDLRV 65
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A523QXZ4_9BACT (DUF1015 domain-containing protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A523QXZ4_9BACT) HSP 1 Score: 75.9 bits (185), Expect = 1.450e-14 Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 10 VKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
VKPF+GLRP PE A VSSPPYDV+ SDEARE++KV SFLR+ KPEVD+ ++ YD +V
Sbjct: 4 VKPFKGLRPKPEFAEEVSSPPYDVLSSDEAREMVKV-NPHSFLRVVKPEVDVDPSIDLYDERV 65
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: H1XUI1_9BACT (Uncharacterized conserved protein UCP033563 n=1 Tax=Caldithrix abyssi DSM 13497 TaxID=880073 RepID=H1XUI1_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 2.730e-14 Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
M +KPF+GLRP E+A V+SPPYDV+ S+EARE+ K SFL INKPE+DLP E N YD V
Sbjct: 1 MAIIKPFKGLRPKKELAEKVASPPYDVLSSEEAREMAKD-NPFSFLHINKPEIDLPPETNIYDEAV 65
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A7Y8IP05_9BACT (DUF1015 domain-containing protein n=1 Tax=Thermoanaerobaculaceae bacterium TaxID=2699758 RepID=A0A7Y8IP05_9BACT) HSP 1 Score: 74.3 bits (181), Expect = 5.120e-14 Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
M +++PFR LRP PE+A V++PPYDVI S+EAR+L E SFL I KPE+DLP EV+ YD +V
Sbjct: 1 MSEIRPFRALRPRPELARQVAAPPYDVISSEEARQLA-AGNELSFLHITKPEIDLPPEVDLYDDRV 65 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51877.12468.1 >prot_H-elongata_contig51877.12468.1 ID=prot_H-elongata_contig51877.12468.1|Name=mRNA_H-elongata_contig51877.12468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKback to top mRNA from alignment at H-elongata_contig51877:3518..3715+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51877.12468.1 ID=mRNA_H-elongata_contig51877.12468.1|Name=mRNA_H-elongata_contig51877.12468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig51877:3518..3715+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51877:3518..3715+ >mRNA_H-elongata_contig51877.12468.1 ID=mRNA_H-elongata_contig51877.12468.1|Name=mRNA_H-elongata_contig51877.12468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig51877:3518..3715+ (Himanthalia elongata Himel1 dioecious)back to top |