mRNA_H-elongata_contig51877.12468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51877.12468.1
Unique NamemRNA_H-elongata_contig51877.12468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.050e-30
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            MV+VKPFRGLRPPPEMAAA+S+PPYDVI+SDEAREL+K  GETSFLR+NKPEVDLP E+NQYDVQV
Sbjct:    1 MVRVKPFRGLRPPPEMAAALSAPPYDVINSDEARELMKTAGETSFLRVNKPEVDLPPEINQYDVQV 66          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A836CBS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.800e-18
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            MV+V+PF   RPPPE+A  V++PPYDV+DSDEAR+    +   +FLR+NKPEVDLP  ++QYD  V
Sbjct:    1 MVRVQPFNAYRPPPEIAREVAAPPYDVLDSDEARDACSRLSTKTFLRVNKPEVDLPTHISQYDTAV 66          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A7V5LI70_9BACT (DUF1015 family protein (Fragment) n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5LI70_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.690e-16
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            M  +KPFRGLRP  E+A  V+SPPYDV+ S+EARE+ K     SFL INKPE+DLP E + YD  V
Sbjct:    1 MAVIKPFRGLRPKKELAEKVASPPYDVLSSEEAREMAK-NNPYSFLHINKPEIDLPPETDIYDETV 65          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A257U5E2_9BACT (Uncharacterized protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A257U5E2_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 4.050e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            M  V+PFR LRP  E+A  V++PPYDVI+SDEARE+ K   E SFL INKPE+DLP EV+ YD +V
Sbjct:    1 MSDVRPFRALRPRSELAERVAAPPYDVINSDEAREMAKG-NEISFLHINKPEIDLPPEVSLYDDRV 65          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A7V6DEF7_9BACT (DUF1015 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V6DEF7_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 5.570e-15
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            M  ++PFR LRP PE+AA V++PPYDVI S+EAREL     E SFL + KPE+DLP +VN YD +V
Sbjct:    1 MSDIRPFRALRPRPELAAKVAAPPYDVISSEEARELA-AGNELSFLHVTKPEIDLPPDVNLYDDRV 65          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A661X934_9BACT (DUF1015 domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A661X934_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 5.600e-15
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYD 189
            M K+KPFRGLRP PE+A  V+SPPYDV++++EAR + K     SFL +NKPE+DLP   N YD
Sbjct:    1 MAKIKPFRGLRPKPELAEKVASPPYDVLNTEEARAMAKD-NPYSFLHVNKPEIDLPEGTNLYD 62          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: W7TNQ3_9STRA (Uncharacterized conserved protein UCP033563 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNQ3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.140e-15
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            MVKV PF+  RPP  +A+ V++PPYDVI SDEAR L     E SFLR+NKPE+DLP  ++ YD++V
Sbjct:    1 MVKVLPFKAYRPPAALASTVAAPPYDVISSDEARRLADGK-EDSFLRVNKPEIDLPASLSSYDLRV 65          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A523QXZ4_9BACT (DUF1015 domain-containing protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A523QXZ4_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 1.450e-14
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   10 VKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            VKPF+GLRP PE A  VSSPPYDV+ SDEARE++KV    SFLR+ KPEVD+   ++ YD +V
Sbjct:    4 VKPFKGLRPKPEFAEEVSSPPYDVLSSDEAREMVKV-NPHSFLRVVKPEVDVDPSIDLYDERV 65          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: H1XUI1_9BACT (Uncharacterized conserved protein UCP033563 n=1 Tax=Caldithrix abyssi DSM 13497 TaxID=880073 RepID=H1XUI1_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.730e-14
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            M  +KPF+GLRP  E+A  V+SPPYDV+ S+EARE+ K     SFL INKPE+DLP E N YD  V
Sbjct:    1 MAIIKPFKGLRPKKELAEKVASPPYDVLSSEEAREMAKD-NPFSFLHINKPEIDLPPETNIYDEAV 65          
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Match: A0A7Y8IP05_9BACT (DUF1015 domain-containing protein n=1 Tax=Thermoanaerobaculaceae bacterium TaxID=2699758 RepID=A0A7Y8IP05_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 5.120e-14
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINKPEVDLPREVNQYDVQV 198
            M +++PFR LRP PE+A  V++PPYDVI S+EAR+L     E SFL I KPE+DLP EV+ YD +V
Sbjct:    1 MSEIRPFRALRPRPELARQVAAPPYDVISSEEARQLA-AGNELSFLHITKPEIDLPPEVDLYDDRV 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51877.12468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D7_ECTSI5.050e-3084.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS0_9STRA9.800e-1857.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V5LI70_9BACT2.690e-1659.09DUF1015 family protein (Fragment) n=1 Tax=Caldithr... [more]
A0A257U5E2_9BACT4.050e-1562.12Uncharacterized protein n=2 Tax=unclassified Acido... [more]
A0A7V6DEF7_9BACT5.570e-1559.09DUF1015 domain-containing protein n=1 Tax=Acidobac... [more]
A0A661X934_9BACT5.600e-1558.73DUF1015 domain-containing protein n=1 Tax=candidat... [more]
W7TNQ3_9STRA8.140e-1557.58Uncharacterized conserved protein UCP033563 n=3 Ta... [more]
A0A523QXZ4_9BACT1.450e-1461.90DUF1015 domain-containing protein n=1 Tax=Candidat... [more]
H1XUI1_9BACT2.730e-1459.09Uncharacterized conserved protein UCP033563 n=1 Ta... [more]
A0A7Y8IP05_9BACT5.120e-1457.58DUF1015 domain-containing protein n=1 Tax=Thermoan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51877contigH-elongata_contig51877:3518..3715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue3.7e-25
Seed eggNOG ortholog2880.D7G0D7
EggNOG free text desc.Protein of unknown function (DUF1015)
EggNOG OGs2SMYX@2759,COG4198@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.3822591-CDS-H-elongata_contig51877:3517..37151622930848.3822591-CDS-H-elongata_contig51877:3517..3715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51877 3518..3715 +
1691679596.311639-CDS-H-elongata_contig51877:3517..37151691679596.311639-CDS-H-elongata_contig51877:3517..3715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51877 3518..3715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51877.12468.1prot_H-elongata_contig51877.12468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51877 3518..3715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51877.12468.1

>prot_H-elongata_contig51877.12468.1 ID=prot_H-elongata_contig51877.12468.1|Name=mRNA_H-elongata_contig51877.12468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MVKVKPFRGLRPPPEMAAAVSSPPYDVIDSDEARELLKVMGETSFLRINK
PEVDLPREVNQYDVQV
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mRNA from alignment at H-elongata_contig51877:3518..3715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51877.12468.1 ID=mRNA_H-elongata_contig51877.12468.1|Name=mRNA_H-elongata_contig51877.12468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig51877:3518..3715+ (Himanthalia elongata Himel1 dioecious)
ATGGTGAAAGTGAAGCCGTTTCGAGGACTGCGCCCGCCTCCGGAGATGGC GGCCGCTGTTTCATCCCCGCCGTACGACGTAATCGACTCCGACGAGGCCC GCGAGCTCCTGAAGGTTATGGGGGAGACGTCCTTTCTGAGGATCAACAAG CCGGAGGTCGACCTCCCTCGAGAGGTCAACCAGTACGACGTGCAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig51877:3518..3715+

>mRNA_H-elongata_contig51877.12468.1 ID=mRNA_H-elongata_contig51877.12468.1|Name=mRNA_H-elongata_contig51877.12468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig51877:3518..3715+ (Himanthalia elongata Himel1 dioecious)
ATGGTGAAAGTGAAGCCGTTTCGAGGACTGCGCCCGCCTCCGGAGATGGC
GGCCGCTGTTTCATCCCCGCCGTACGACGTAATCGACTCCGACGAGGCCC
GCGAGCTCCTGAAGGTTATGGGGGAGACGTCCTTTCTGAGGATCAACAAG
CCGGAGGTCGACCTCCCTCGAGAGGTCAACCAGTACGACGTGCAGGTTAT
GGTGAAAGTGAAGCCGTTTCGAGGACTGCGCCCGCCTCCGGAGATGGCGG
CCGCTGTTTCATCCCCGCCGTACGACGTAATCGACTCCGACGAGGCCCGC
GAGCTCCTGAAGGTTATGGGGGAGACGTCCTTTCTGAGGATCAACAAGCC
GGAGGTCGACCTCCCTCGAGAGGTCAACCAGTACGACGTGCAGGTT
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