mRNA_H-elongata_contig51730.12448.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51730.12448.1
Unique NamemRNA_H-elongata_contig51730.12448.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: A0A6H5L3B9_9PHAE (GRIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3B9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.110e-28
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 SINLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADVIAKNITARAQHQGSFGGSLP 189
            +INLEYLKNCVVG LRTSEPSEHARLLPVITTILKLS +EA VIAKNI+ RAQHQGSFGGSLP
Sbjct:  948 AINLEYLKNCVVGALRTSEPSEHARLLPVITTILKLSEDEAAVIAKNISTRAQHQGSFGGSLP 1010          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: A0A6J0RP48_BACDO (GRIP and coiled-coil domain-containing protein 2 isoform X2 n=6 Tax=Bactrocera TaxID=27456 RepID=A0A6J0RP48_BACDO)

HSP 1 Score: 51.6 bits (122), Expect = 5.390e-6
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADV---IAKNITARAQHQG-SFGGSLPL 192
            N EYLKN V+  L  +   E  RL+PV+ TILKLSREE DV   +AK      + QG  +G  LPL
Sbjct: 1211 NAEYLKNVVLKFLTLTNGDERVRLVPVLQTILKLSREEKDVLNCVAKGQKLPTETQGRGWGSFLPL 1276          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: A0A0A1XCD8_ZEUCU (GRIP and coiled-coil domain-containing protein 2 n=3 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1XCD8_ZEUCU)

HSP 1 Score: 51.6 bits (122), Expect = 5.390e-6
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADV---IAKNITARAQHQG-SFGGSLPL 192
            N EYLKN V+  L  S   E  RL+PV+ TILKLSREE D+   +AK      + QG  +G  LPL
Sbjct: 1220 NAEYLKNVVLKFLTLSNGDERIRLVPVLHTILKLSREEKDILNCVAKGQKLPTETQGRGWGSFLPL 1285          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: A0A0K8VIG6_BACLA (GRIP and coiled-coil domain-containing protein 2 n=2 Tax=Bactrocera TaxID=47832 RepID=A0A0K8VIG6_BACLA)

HSP 1 Score: 51.2 bits (121), Expect = 7.340e-6
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADV---IAKNITARAQHQG-SFGGSLPL 192
            N EYLKN V+  L  +   E  RL+PV+ TILKLSREE D+   +AK      + QG  +G  LPL
Sbjct:  882 NAEYLKNVVLKFLMLTNGDERVRLVPVLQTILKLSREEKDILNCVAKGQKLPTETQGRGWGSFLPL 947          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: UPI0008DC6BC9 (GRIP and coiled-coil domain-containing protein 2 n=1 Tax=Bactrocera latifrons TaxID=174628 RepID=UPI0008DC6BC9)

HSP 1 Score: 51.2 bits (121), Expect = 7.380e-6
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADV---IAKNITARAQHQG-SFGGSLPL 192
            N EYLKN V+  L  +   E  RL+PV+ TILKLSREE D+   +AK      + QG  +G  LPL
Sbjct: 1212 NAEYLKNVVLKFLMLTNGDERVRLVPVLQTILKLSREEKDILNCVAKGQKLPTETQGRGWGSFLPL 1277          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: A0A6P8YEG3_THRPL (GRIP and coiled-coil domain-containing protein 2 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YEG3_THRPL)

HSP 1 Score: 50.8 bits (120), Expect = 1.010e-5
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADVIAKNITARAQHQGS-----FGGSLPL 192
            NLEYLKN VV  +      E  RL+PV+ TILKLS EEA+++A    A+   QG+     +G  LPL
Sbjct: 1241 NLEYLKNIVVKFITLQNGDERQRLVPVLNTILKLSPEEANLVAT--VAKGASQGNAPGRGWGSYLPL 1305          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: A0A1B0BT67_9MUSC (GRIP domain-containing protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0BT67_9MUSC)

HSP 1 Score: 49.7 bits (117), Expect = 2.580e-5
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADVI-----AKNITARAQHQGSFGGSLP 189
            N EYLKN ++  L  +   E  RL+PV+ TILKLSR E +++      + + A + H+  +G  LP
Sbjct: 1169 NSEYLKNVIMKFLTLNNSDERIRLVPVLNTILKLSRTETEMLNCVAKGQKVVADSSHRSGWGNFLP 1234          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: UPI001F05C425 (GRIP and coiled-coil domain-containing protein 2 isoform X1 n=3 Tax=Lucilia TaxID=7374 RepID=UPI001F05C425)

HSP 1 Score: 49.7 bits (117), Expect = 2.590e-5
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADVI-----AKNITARAQHQGSFGGSLP 189
            N EY+KN ++  L  +   E  RL+PV+ TILKL+R EA+++      + +T   Q  G +G  LP
Sbjct: 1309 NSEYVKNVIMKFLTLNNADEKTRLVPVLNTILKLNRSEAEMLNCVAKGQKVTETTQRTGGWGNFLP 1374          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: A0A131Z717_RHIAP (Hyaluronan mediated motility receptor (Fragment) n=8 Tax=Rhipicephalus TaxID=426455 RepID=A0A131Z717_RHIAP)

HSP 1 Score: 49.7 bits (117), Expect = 2.600e-5
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 SINLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEAD----VIAKNITARAQHQGSFGGSLP 189
            ++NLEYLKN ++  +     SE  RL+PV+TT+LKLS EE      V+ K +   A    ++GG LP
Sbjct: 1833 AVNLEYLKNIIMKFVTLRGGSEKERLVPVLTTMLKLSPEEKKDLEAVVTKEMQQDAAGASNWGGYLP 1899          
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Match: UPI00178302E8 (GRIP and coiled-coil domain-containing protein 2 n=2 Tax=Rhagoletis TaxID=28609 RepID=UPI00178302E8)

HSP 1 Score: 49.3 bits (116), Expect = 3.540e-5
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    7 NLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADV---IAKNITARAQHQG-SFGGSLPL 192
            N EYLKN V+  L  +   E  RL+PV+ TILKLSR E ++   +AK      + QG S+G  LP+
Sbjct: 1233 NAEYLKNIVLKFLTLTSGDERVRLVPVLNTILKLSRNEKEILNCVAKGQKLPTESQGRSWGSFLPI 1298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51730.12448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L3B9_9PHAE6.110e-2888.89GRIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6J0RP48_BACDO5.390e-648.48GRIP and coiled-coil domain-containing protein 2 i... [more]
A0A0A1XCD8_ZEUCU5.390e-648.48GRIP and coiled-coil domain-containing protein 2 n... [more]
A0A0K8VIG6_BACLA7.340e-646.97GRIP and coiled-coil domain-containing protein 2 n... [more]
UPI0008DC6BC97.380e-646.97GRIP and coiled-coil domain-containing protein 2 n... [more]
A0A6P8YEG3_THRPL1.010e-546.27GRIP and coiled-coil domain-containing protein 2 n... [more]
A0A1B0BT67_9MUSC2.580e-537.88GRIP domain-containing protein n=6 Tax=Glossina Ta... [more]
UPI001F05C4252.590e-537.88GRIP and coiled-coil domain-containing protein 2 i... [more]
A0A131Z717_RHIAP2.600e-541.79Hyaluronan mediated motility receptor (Fragment) n... [more]
UPI00178302E83.540e-543.94GRIP and coiled-coil domain-containing protein 2 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51730contigH-elongata_contig51730:2210..2401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.4394016-CDS-H-elongata_contig51730:2209..24011622930846.4394016-CDS-H-elongata_contig51730:2209..2401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51730 2210..2401 +
1691679595.547316-CDS-H-elongata_contig51730:2209..24011691679595.547316-CDS-H-elongata_contig51730:2209..2401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51730 2210..2401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51730.12448.1prot_H-elongata_contig51730.12448.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51730 2210..2401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51730.12448.1

>prot_H-elongata_contig51730.12448.1 ID=prot_H-elongata_contig51730.12448.1|Name=mRNA_H-elongata_contig51730.12448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
SINLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSREEADVIAKNITA
RAQHQGSFGGSLPL
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mRNA from alignment at H-elongata_contig51730:2210..2401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51730.12448.1 ID=mRNA_H-elongata_contig51730.12448.1|Name=mRNA_H-elongata_contig51730.12448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig51730:2210..2401+ (Himanthalia elongata Himel1 dioecious)
TCGATCAACCTGGAATACCTAAAGAATTGCGTGGTTGGCTGCTTACGAAC CTCGGAGCCGTCAGAACACGCGCGCCTGCTGCCCGTCATCACGACAATTT TGAAGCTGTCTAGAGAAGAGGCCGACGTTATCGCCAAGAATATAACAGCG CGAGCACAGCATCAAGGAAGCTTCGGGGGATCGTTGCCGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig51730:2210..2401+

>mRNA_H-elongata_contig51730.12448.1 ID=mRNA_H-elongata_contig51730.12448.1|Name=mRNA_H-elongata_contig51730.12448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig51730:2210..2401+ (Himanthalia elongata Himel1 dioecious)
TCGATCAACCTGGAATACCTAAAGAATTGCGTGGTTGGCTGCTTACGAAC
CTCGGAGCCGTCAGAACACGCGCGCCTGCTGCCCGTCATCACGACAATTT
TGAAGCTGTCTAGAGAAGAGGCCGACGTTATCGCCAAGAATATAACAGCG
CGAGCACAGCATCAAGGAAGCTTCGGGGGATCGTTGCCGTTGTCGATCAA
CCTGGAATACCTAAAGAATTGCGTGGTTGGCTGCTTACGAACCTCGGAGC
CGTCAGAACACGCGCGCCTGCTGCCCGTCATCACGACAATTTTGAAGCTG
TCTAGAGAAGAGGCCGACGTTATCGCCAAGAATATAACAGCGCGAGCACA
GCATCAAGGAAGCTTCGGGGGATCGTTGCCGTTG
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