mRNA_H-elongata_contig51646.12438.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51646.12438.1
Unique NamemRNA_H-elongata_contig51646.12438.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A6H5L2I6_9PHAE (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2I6_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.080e-48
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 1
Query:    1 DGCTLTRHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKYALELSSGHRK 273
            DG    RHV+LPK  AK++P SRLLTEDEWR LGVQQSRGWQHYAVH PEPHILLFRRPLGTNPVTG+VDPELEREAKEKYA ELS G RK
Sbjct:   12 DGSFEYRHVILPKETAKILPQSRLLTEDEWRHLGVQQSRGWQHYAVHTPEPHILLFRRPLGTNPVTGRVDPELEREAKEKYAEELSDGIRK 102          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: W7T145_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T145_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.970e-40
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   19 RHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKYALELSSG 264
            RHV+LPK +A+ +P  RLLTE EWR +GVQQSRGWQHYA+HRPEPHILLFRRPLGT+PVTGKV+ ELEREAKEKYA  ++  
Sbjct:   19 RHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGA 100          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A7S3MEH0_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEH0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.260e-39
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 DGCTLTRHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKYALELSSGHR 270
            DG    RHV+LPK+ A+ +P +R LTE EWR++GVQQSRGW+HYA H+PEPHILLFRRPLGT+PV+G+VDPELEREA+EKY  EL+   R
Sbjct:   14 DGKYEYRHVILPKDSARNLPKNRTLTELEWRNIGVQQSRGWEHYACHKPEPHILLFRRPLGTDPVSGEVDPELEREAREKYQQELAVNQR 103          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A7S2BWV6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWV6_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.960e-39
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1
Query:   19 RHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKYALELSSGHRK 273
            RHV+LPK +AK +P +RLL E EWR +GVQQSRGWQHYA+HRPEPHILLFRRPLGT+PVTGKVD ELER+AK+ Y   L+   RK
Sbjct:   38 RHVILPKELAKNLPKARLLGEQEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDVELERDAKDAYNASLAVNQRK 122          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.190e-38
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:   19 RHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKYALELS 258
            RHV+LPK++AK +P SR+LTE EWR LGVQQSRGW HYA+HRPEPHILLF+RPLGT+PV+GKVDP LE+EAK+ Y  EL+
Sbjct:   19 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELA 98          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A7S2VEK7_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEK7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.520e-38
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 DGCTLTRHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKY 243
            D     RHV+LPK +AK +P SRLLTE EWR +GVQQSRGWQHYA+HRPEPHILLFRRPLGT+P +G+VDPELER A+++Y
Sbjct:   31 DDVNEYRHVILPKELAKTLPKSRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPELERAARDEY 111          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A6S9ANL1_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ANL1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.680e-38
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 DGCTLTRHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKY 243
            D     RHV+LPK++AK +P +RLL+E EWR +GVQQSRGW HYA+HRPEPHILLFRRPLGT+P +G+VDPELEREA+E+Y
Sbjct:   15 DTANEYRHVILPKDLAKTLPKNRLLSESEWRGIGVQQSRGWMHYAIHRPEPHILLFRRPLGTDPQSGQVDPELEREAREEY 95          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.010e-38
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1
Query:   19 RHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKYA--LELSSG 264
            RHV+LPK +AK +P +RLL+E EWR +GVQQSRGW HYA+HRPEPHILLFRRPLGT+PVTGK+DP LEREAK+ Y   LEL+  
Sbjct:   37 RHVILPKELAKNLPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLELNQA 120          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A1Z5K5B7_FISSO (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5B7_FISSO)

HSP 1 Score: 131 bits (330), Expect = 5.240e-38
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 1
Query:   19 RHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKY 243
            RHV+LPK +AK +P SRLLTE EWRS+GVQQSRGWQHYA+HRPEPHILLFRRPLGT+P +G+VDPEL + A+E+Y
Sbjct:   21 RHVILPKELAKTLPKSRLLTESEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPELLKAAREEY 95          
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Match: A0A7S3P5A6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5A6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.820e-38
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 DGCTLTRHVMLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRPLGTNPVTGKVDPELEREAKEKY 243
            D     RHV+LPK +AK +P SRLLTE EWRS+GVQQSRGWQHYA+HRPEPHILLFRRPLGT+P +G++DPEL R A+++Y
Sbjct:   46 DDVNEYRHVILPKELAKTLPKSRLLTESEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRIDPELARAARDEY 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51646.12438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2I6_9PHAE1.080e-4882.42Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
W7T145_9STRA1.970e-4074.39Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S3MEH0_9STRA3.260e-3967.78Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S2BWV6_9STRA3.960e-3971.76Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
D7G7T5_ECTSI1.190e-3873.75Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S2VEK7_9STRA1.520e-3871.60Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A6S9ANL1_9STRA2.680e-3870.37Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S2BBH9_9STRA4.010e-3871.43Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A1Z5K5B7_FISSO5.240e-3876.00Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S3P5A6_9STRA6.820e-3870.37Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51646contigH-elongata_contig51646:3401..3897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue7.2e-34
Seed eggNOG ortholog2880.D8LMM5
KEGG koko:K02219
KEGG Pathwayko04111,ko05200,ko05222,map04111,map05200,map05222
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activator activity
EggNOG OGsKOG3484@1,KOG3484@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin-dependent kinase, regulatory subunit
Ec32 orthologEc-06_003970.1
Exons2
Model size276
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51646.12438.1prot_H-elongata_contig51646.12438.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51646 3401..3870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.1899605-CDS-H-elongata_contig51646:3400..35331622930845.1899605-CDS-H-elongata_contig51646:3400..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51646 3401..3533 -
1691679594.9508862-CDS-H-elongata_contig51646:3400..35331691679594.9508862-CDS-H-elongata_contig51646:3400..3533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51646 3401..3533 -
1622930845.209791-CDS-H-elongata_contig51646:3754..38701622930845.209791-CDS-H-elongata_contig51646:3754..3870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51646 3755..3870 -
1691679594.9648428-CDS-H-elongata_contig51646:3754..38701691679594.9648428-CDS-H-elongata_contig51646:3754..3870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51646 3755..3870 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.2226229-UTR-H-elongata_contig51646:3870..38971622930845.2226229-UTR-H-elongata_contig51646:3870..3897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51646 3871..3897 -
1691679594.9744458-UTR-H-elongata_contig51646:3870..38971691679594.9744458-UTR-H-elongata_contig51646:3870..3897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51646 3871..3897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51646.12438.1

>prot_H-elongata_contig51646.12438.1 ID=prot_H-elongata_contig51646.12438.1|Name=mRNA_H-elongata_contig51646.12438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MLPKNMAKVIPTSRLLTEDEWRSLGVQQSRGWQHYAVHRPEPHILLFRRP
LGTNPVTGKVDPELEREAKEKYALELSSGHRK*
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mRNA from alignment at H-elongata_contig51646:3401..3897-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51646.12438.1 ID=mRNA_H-elongata_contig51646.12438.1|Name=mRNA_H-elongata_contig51646.12438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig51646:3401..3897- (Himanthalia elongata Himel1 dioecious)
GACGGATGTACCTTGACCAGGCACGTGATGCTGCCGAAGAACATGGCAAA GGTAATCCCAACTAGTCGACTTCTCACGGAGGACGAGTGGAGGAGCCTAG GCGTTCAACAAAGCCGTGGTTGGCAACACTACGCCGTACACCGGTGAGTG ACAAAATTGTATGCCCAAAACAAAACAACTACCCGTGTGTGTGTGTGTGT GTGTCACAATGCACGCAAAAGCTACAGCCATTTGTCAAAACATTTTTTAT CGAAACGCTAAAGTCCATCCATTTGCATAGCCATATGTTATATATATATA TATATATATATATCAAGATAATCTGATCTGCTTGTTCAAAAAATAAATGC CATGTGACGCTCAGGCCGGAGCCACACATCCTCTTGTTCCGCCGTCCGCT CGGGACCAATCCTGTGACTGGAAAGGTGGACCCCGAACTCGAGCGTGAGG CGAAGGAGAAATACGCCCTCGAACTTTCAAGTGGTCATCGCAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig51646:3401..3897-

>mRNA_H-elongata_contig51646.12438.1 ID=mRNA_H-elongata_contig51646.12438.1|Name=mRNA_H-elongata_contig51646.12438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig51646:3401..3897- (Himanthalia elongata Himel1 dioecious)
ATGCTGCCGAAGAACATGGCAAAGGTAATCCCAACTAGTCGACTTCTCAC
GGAGGACGAGTGGAGGAGCCTAGGCGTTCAACAAAGCCGTGGTTGGCAAC
ACTACGCCGTACACCGATGCTGCCGAAGAACATGGCAAAGGTAATCCCAA
CTAGTCGACTTCTCACGGAGGACGAGTGGAGGAGCCTAGGCGTTCAACAA
AGCCGTGGTTGGCAACACTACGCCGTACACCGGCCGGAGCCACACATCCT
CTTGTTCCGCCGTCCGCTCGGGACCAATCCTGTGACTGGAAAGGTGGACC
CCGAACTCGAGCGTGAGGCGAAGGAGAAATACGCCCTCGAACTTTCAAGT
GGTCATCGCAAGTAGGCCGGAGCCACACATCCTCTTGTTCCGCCGTCCGC
TCGGGACCAATCCTGTGACTGGAAAGGTGGACCCCGAACTCGAGCGTGAG
GCGAAGGAGAAATACGCCCTCGAACTTTCAAGTGGTCATCGCAAGTAG
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