mRNA_H-elongata_contig51463.12409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51463.12409.1
Unique NamemRNA_H-elongata_contig51463.12409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: D8LDI0_ECTSI (Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI0_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 1.480e-64
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNG HLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE
Sbjct:  480 VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGSHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 586
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: A0A6H5KHP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.660e-64
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNG HLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE
Sbjct:  452 VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGSHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 558
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: W7U4M8_9STRA (Swi snf matrix actin dependent regulator of subfamily member 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4M8_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.290e-52
Identity = 79/106 (74.53%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    4 KLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            KLYIGMT MQR WY+ +L RD   LN LGG D++RLLNILMQLRKVCNHPYLF+GAEPGPP+++GPH+WE+ GKM+LL KLLP+L+ QGSRVL+FCQMTR LDILE
Sbjct:  160 KLYIGMTDMQRDWYRKILRRDGAQLNMLGGTDRLRLLNILMQLRKVCNHPYLFEGAEPGPPYIDGPHIWEHCGKMILLDKLLPRLKAQGSRVLIFCQMTRQLDILE 265
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: A0A7S1ZB35_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZB35_TRICV)

HSP 1 Score: 170 bits (430), Expect = 4.840e-52
Identity = 76/106 (71.70%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    4 KLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            KLY+G+T MQ++WYK +L +D   LN LGGP K+RLLNILMQLRKVCNHPYLFDGAEPGPP+ +GPHLW+N+ KM LL KLLPKL+ +GSR+L+F QMTR+LDILE
Sbjct:   15 KLYVGLTAMQQEWYKKVLTKDAHELNALGGPSKVRLLNILMQLRKVCNHPYLFDGAEPGPPYTDGPHLWDNSAKMALLNKLLPKLKAKGSRILIFTQMTRVLDILE 120
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: A0A7S1C7G7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7G7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.740e-51
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    4 KLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            KLY+GM+PMQR+WYK +L++D   LN LGG D++RLLN+LMQLRKVCNHPYLFDGAEPGPP+ NGPHL ENAGKM LL +LLPKL+ QGSRVL+FCQMTR+LDILE
Sbjct:  331 KLYVGMSPMQREWYKRVLSKDAHALNALGGTDRVRLLNVLMQLRKVCNHPYLFDGAEPGPPYTNGPHLHENAGKMSLLDRLLPKLKAQGSRVLIFCQMTRMLDILE 436
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: A0A7S2SFZ0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFZ0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.010e-49
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    4 KLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            KLYIG++  QR+WY  +L++D  +LN LGGPD+++LLN+LMQLRKVCNHPYLF+GAEPGPP+ NGPHLWENAGKMVLL KLLPKLR QGSRVL+F QMTRLLDILE
Sbjct:  439 KLYIGLSAKQREWYTKILSKDAHSLNALGGPDRVKLLNVLMQLRKVCNHPYLFEGAEPGPPYTNGPHLWENAGKMVLLDKLLPKLRAQGSRVLIFSQMTRLLDILE 544
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: I2CQP0_NANGC (Atpase-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CQP0_NANGC)

HSP 1 Score: 175 bits (443), Expect = 5.130e-49
Identity = 79/106 (74.53%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    4 KLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            KLYIGMT MQR WY+ +L RD   LN LGG D++RLLNILMQLRKVCNHPYLF+GAEPGPP+++GPH+WE+ GKM+LL KLLP+L+ QGSRVL+FCQMTR LDILE
Sbjct:   41 KLYIGMTDMQRDWYRKILRRDGAQLNMLGGTDRLRLLNILMQLRKVCNHPYLFEGAEPGPPYIDGPHIWEHCGKMILLDKLLPRLKAQGSRVLIFCQMTRQLDILE 146
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: A0A7S3Q0P3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0P3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.960e-49
Identity = 80/106 (75.47%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    4 KLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            KL+IG+TPMQ++WYK LLN+D   LN+LGGPD++RLLNILMQLRK+CNHPYLF+GAE GPP+ +GPHLWEN+GKM LL KLLPKL+ QGSRVL+F QMTR+LDILE
Sbjct:  355 KLFIGLTPMQQEWYKRLLNKDAHKLNSLGGPDQVRLLNILMQLRKICNHPYLFEGAEQGPPYFDGPHLWENSGKMSLLNKLLPKLKAQGSRVLIFSQMTRILDILE 460
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: F0YAG5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAG5_AURAN)

HSP 1 Score: 172 bits (437), Expect = 1.230e-48
Identity = 80/107 (74.77%), Postives = 93/107 (86.92%), Query Frame = 1 
Query:    1 VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            VKLYIGMT MQR WY  +L++D   LN LGGPD+++LLNILMQLRKVCNHPYLF+GAEPGPPF++GPHLWEN GK+VL+ KLLPKL  Q SRVL+F QMTR+LDILE
Sbjct:  357 VKLYIGMTEMQRLWYTKILSKDAHTLNALGGPDRVQLLNILMQLRKVCNHPYLFEGAEPGPPFMDGPHLWENTGKLVLMSKLLPKLMAQDSRVLIFSQMTRMLDILE 463
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BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Match: A0A813CIX4_9DINO (Smarca5 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CIX4_9DINO)

HSP 1 Score: 175 bits (443), Expect = 1.250e-48
Identity = 79/106 (74.53%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    4 KLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILE 321
            KLY+GMT +Q++WYK +L++DV  LN +GGP+++RLLNILMQLRKVCNHPYLF+GAEPGPP+ NGPHLWE++GKMVLL KLLPKL+ QGSRVL+F QMTR LDILE
Sbjct:  375 KLYVGMTALQKEWYKRILSKDVITLNAIGGPERVRLLNILMQLRKVCNHPYLFEGAEPGPPYTNGPHLWESSGKMVLLHKLLPKLKQQGSRVLIFSQMTRQLDILE 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51463.12409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDI0_ECTSI1.480e-6499.07Ci-SWI/SNF n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KHP7_9PHAE1.660e-6499.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U4M8_9STRA2.290e-5274.53Swi snf matrix actin dependent regulator of subfam... [more]
A0A7S1ZB35_TRICV4.840e-5271.70Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1C7G7_9STRA2.740e-5176.42Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2SFZ0_9STRA2.010e-4976.42Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
I2CQP0_NANGC5.130e-4974.53Atpase-like protein n=2 Tax=Nannochloropsis gadita... [more]
A0A7S3Q0P3_9STRA6.960e-4975.47Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
F0YAG5_AURAN1.230e-4874.77Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A813CIX4_9DINO1.250e-4874.53Smarca5 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51463contigH-elongata_contig51463:382..2286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue3.2e-52
Seed eggNOG ortholog2880.D8LDI0
Preferred nameSMARCA5
KEGG koko:K11654,ko:K11727
GOsGO:0000003,GO:0000122,GO:0000166,GO:0000182,GO:0000183,GO:0000228,GO:0000733,GO:0000785,GO:0000790,GO:0000793,GO:0000819,GO:0000981,GO:0001067,GO:0001178,GO:0001410,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005677,GO:0005694,GO:0005700,GO:0005730,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006363,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007417,GO:0007420,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009373,GO:0009553,GO:0009561,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0014070,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016584,GO:0016587,GO:0016589,GO:0016590,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019237,GO:0019438,GO:0019953,GO:0019954,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030182,GO:0030435,GO:0030436,GO:0030447,GO:0030518,GO:0030522,GO:0030554,GO:0030575,GO:0030874,GO:0031010,GO:0031055,GO:0031213,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034080,GO:0034097,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035063,GO:0035075,GO:0035076,GO:0035092,GO:0035639,GO:0035690,GO:0036094,GO:0036310,GO:0036314,GO:0036315,GO:0036436,GO:0036437,GO:0040007,GO:0040026,GO:0040028,GO:0040029,GO:0040034,GO:0042127,GO:0042221,GO:0042493,GO:0042623,GO:0042752,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043401,GO:0043486,GO:0043565,GO:0043933,GO:0043934,GO:0043936,GO:0043954,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045996,GO:0046019,GO:0046020,GO:0046483,GO:0046688,GO:0048229,GO:0048232,GO:0048468,GO:0048506,GO:0048509,GO:0048510,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0060260,GO:0060303,GO:0060322,GO:0061062,GO:0061063,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070615,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070870,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071345,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071444,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090537,GO:0090568,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097549,GO:0097617,GO:0097659,GO:0098813,GO:0140097,GO:0140110,GO:1900034,GO:1900036,GO:1900049,GO:1900050,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904949,GO:1905268,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000142,GO:2000177,GO:2001141,GO:2001251
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size321
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51463.12409.1prot_H-elongata_contig51463.12409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51463 382..2268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.1077507-CDS-H-elongata_contig51463:381..4771622930842.1077507-CDS-H-elongata_contig51463:381..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 382..477 -
1691679593.5806947-CDS-H-elongata_contig51463:381..4771691679593.5806947-CDS-H-elongata_contig51463:381..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 382..477 -
1622930842.1230485-CDS-H-elongata_contig51463:1243..13301622930842.1230485-CDS-H-elongata_contig51463:1243..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 1244..1330 -
1691679593.5906441-CDS-H-elongata_contig51463:1243..13301691679593.5906441-CDS-H-elongata_contig51463:1243..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 1244..1330 -
1622930842.1378226-CDS-H-elongata_contig51463:2148..22681622930842.1378226-CDS-H-elongata_contig51463:2148..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 2149..2268 -
1691679593.6010194-CDS-H-elongata_contig51463:2148..22681691679593.6010194-CDS-H-elongata_contig51463:2148..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51463 2149..2268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.1522374-UTR-H-elongata_contig51463:2268..22861622930842.1522374-UTR-H-elongata_contig51463:2268..2286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51463 2269..2286 -
1691679593.6148868-UTR-H-elongata_contig51463:2268..22861691679593.6148868-UTR-H-elongata_contig51463:2268..2286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51463 2269..2286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51463.12409.1

>prot_H-elongata_contig51463.12409.1 ID=prot_H-elongata_contig51463.12409.1|Name=mRNA_H-elongata_contig51463.12409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDG
AEPGPPFVNGPHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDIL
E
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mRNA from alignment at H-elongata_contig51463:382..2286-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51463.12409.1 ID=mRNA_H-elongata_contig51463.12409.1|Name=mRNA_H-elongata_contig51463.12409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1905bp|location=Sequence derived from alignment at H-elongata_contig51463:382..2286- (Himanthalia elongata Himel1 dioecious)
GTGAAGCTGTACATCGGCATGACGCCCATGCAGCGTAAGTGGTACAAGGA
TCTTCTTAACCGCGATGTCGGCAACCTCAACACCCTTGGTGGGCCTGACA
AGATGCGTCTGCTGAATATTCTCATGCAGCTGAGGAAGGTGTGATGAGAG
GTTTTGGTGCGTTTTGTATGTGTTTCAGTGTGGTTGCGATTTACGTTTTC
TGACGGGTGAGGGATGACAGTGTTTTGATGCGTTTTTTGGGGTAGTTTTT
TCTCCGGGGGCATTAATTTTTCCTCCTAGCGTGTGTGTGCGTGTGTATGA
AAGAGGGAAGAGCTACACCCGGAAGGTTGACCAAAGAGGATATCGCAACT
CGTTCCCCCTCTAGCTTTTGGAAATACAGCGGAGGTGTAGCATTAAAGAG
GCTAATATAGGTGGGTGGGGAATTCGATCGATGCACTCGTGCTGCTGTAG
AGTTACGCCTTTTGAGGGTTTGAAGGCACGATTCCGGACGAAACCGTCAG
AGTCGGATGATAAAGATCGGCGCGCGATGAGGCTTCTGTCCTGTCATGTC
TGTACCTTTTGCATCGCATCTGGAAGGTACAGTCGAGCTATGTATGCCAG
GAATCTTGCTCCGAGCACGAAAGAACCGATTCGGTTCGATTCGGCGGTTT
GATTTTGGATGATATATCTCGCTCGATACAGTAATAGTAACAATAGTAGT
AATAATAGTAACAGTAAGTAATAGCAATAGTATTAGTAATAGTATTAGTA
ACAGTAATACTAATAGTAACATTAATAGTAAATGTTAATGTAATAGTGAT
GGAAGGATAAATAGTATTAGTAACAATCCTGCCATCCCGGAAGTTAGGAG
CAGTTATAGTAAGGGTAGTGGAGAAACTTCCGAGTCCAAATCCCGCGGGT
GCCGTTGCTCCGTGCGCTTGTTCTGTGGCCGCTTGATCATGGTTTTTTTT
TTAAAGGTGTGCAACCACCCGTATCTTTTCGACGGCGCAGAGCCTGGACC
GCCGTTCGTCAACGGACCGCACCTCTGGGAGAACGCCGGAAAGGTATTAG
TATTAGTAATATATATAGATACCGTGTAATAAAAAACAACATGTGGCATC
AAATGTACCTTCCGTTTCATAAAAAGGTATCTAAGTGTATTTTCCTTGCG
TGGTAAAGAAATAGCAAAAAAATTGTAAAATATCCGGTATAATTAGAAAA
GGTACTTCGGGATTCAGAAACCGGAAACGTTGCAGTAGTGCCTTGCGTGG
TACGGGAGGGCAGCGTTTGGTTTAAAATGCGGCGCAATTGGAAAATGTAC
CCTGCGTTTCTCAAGTGATACATGGATGGCAAAGCTTGGTCACAAATACA
CAGCGCTATTGAGAAGATACTCATGCATTTTTGAAAATAAGGTACCCTGT
GTTTCAGGAAAAAAGGTATCTTGCTTGCTCTATGAAACGTTTTACCTTTC
GTTACCCCCTCCCCCCAAAAGTATTACATTGCACGCAACAAGAACAAAAT
TCGTTTTTTGTGCGACAAACTACTTGTTAATATAGGTTTTCCACGTGTCT
TAAAAAGTGTATGAAAAGAATGCACTAAAGTGAAAAGGAACCTAAACTAG
TCTGCCAGTGTAGTTTCCTGTTCACTTTAGTGCATGTTTTTCGTGCATTG
TTTGTGACACGTGGAAACCCTAAAATAGCTCAAAAAGGGTAATGTTAGAA
AGGTACCGGCGGTAGCGCGAGCGAGATATACGTTAGCCGTTATCGGCTTA
TTTTATTTATTTATGATTTTTGTCTCCGCTCCGCTCCGCTTCATTTATTT
TTTTCTTAGATGGTCCTGCTCCAAAAACTGCTGCCCAAGCTCCGGATGCA
GGGAAGCAGAGTCCTCCTCTTCTGCCAGATGACACGTTTGCTCGACATCC
TTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig51463:382..2286-

>mRNA_H-elongata_contig51463.12409.1 ID=mRNA_H-elongata_contig51463.12409.1|Name=mRNA_H-elongata_contig51463.12409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig51463:382..2286- (Himanthalia elongata Himel1 dioecious)
ATGACGCCCATGCAGCGTAAGTGGTACAAGGATCTTCTTAACCGCGATGT
CGGCAACCTCAACACCCTTGGTGGGCCTGACAAGATGCGTCTGCTGAATA
TTCTCATGCAGCTGAGGAAGATGACGCCCATGCAGCGTAAGTGGTACAAG
GATCTTCTTAACCGCGATGTCGGCAACCTCAACACCCTTGGTGGGCCTGA
CAAGATGCGTCTGCTGAATATTCTCATGCAGCTGAGGAAGGTGTGCAACC
ACCCGTATCTTTTCGACGGCGCAGAGCCTGGACCGCCGTTCGTCAACGGA
CCGCACCTCTGGGAGAACGCCGGAAAGGTGTGCAACCACCCGTATCTTTT
CGACGGCGCAGAGCCTGGACCGCCGTTCGTCAACGGACCGCACCTCTGGG
AGAACGCCGGAAAGATGGTCCTGCTCCAAAAACTGCTGCCCAAGCTCCGG
ATGCAGGGAAGCAGAGTCCTCCTCTTCTGCCAGATGACACGTTTGCTCGA
CATCCTTGAGATGGTCCTGCTCCAAAAACTGCTGCCCAAGCTCCGGATGC
AGGGAAGCAGAGTCCTCCTCTTCTGCCAGATGACACGTTTGCTCGACATC
CTTGAG
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