mRNA_H-elongata_contig51373.12397.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A6H5K6N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N9_9PHAE) HSP 1 Score: 125 bits (315), Expect = 4.260e-33 Identity = 59/128 (46.09%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 1 VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEY 384
VAAR L A +V+F RV G ++ V TRHS+Q+ + +H+ SD++L NHSC PNC++++ + QP + + VR + E + IDYNAME+D++ PFDC CGA CRG ++GFS L+R Q EY
Sbjct: 115 VAARVLEANQVLFSRVEGLVTGVKTRHSVQLSKERHLETGSDLALMNHSCEPNCQLEVVDTAE----QPYLRVTVRAPRVQPNEALEIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEY 238
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: D8LGU6_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU6_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 4.010e-21 Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 139 NHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEY 384
NHSC PNC++++ + QP + + VR + E++TIDYNAME+D++ PFDC CGA CRG ++GFS L+R Q EY
Sbjct: 2 NHSCEPNCQLEVVDTAE----QPYLRVTVRAPRVQPSELLTIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEY 79
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A3P3YAV3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YAV3_PLABS) HSP 1 Score: 83.6 bits (205), Expect = 1.230e-17 Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 4 AARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAE 381
A L VF+ VG E+ ++ ++++Q+ + QH+ + NHSC PNC+ ++ + +V + +I G+ IT DYN E D+++PFDC+CGA+NC+ R+ GF L +A+
Sbjct: 38 AVAALKTGTTVFEEVG-EVRSLPDKYTLQLDDGQHMLCAGPLIFCNHSCEPNCKAQVEYG---------LVRMVAIKQINAGDPITFDYNTTEWDMASPFDCICGASNCKKRVAGFKNLTPAQKAD 153
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A6H5JKC4_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC4_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 6.670e-15 Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 148 CAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEY 384
C+ N N QP + + VR I E++TIDYNAME+D+S PFDC CGA CRG ++GFS L+R Q EY
Sbjct: 253 CSNNRRAHAMNTFCNPQEQPYLRVTVRAPRIRPNELLTIDYNAMEIDMSCPFDCQCGAVRCRGWVSGFSNLSRAEQKEY 331
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A022W791_TRIRU (Post-SET domain-containing protein n=9 Tax=Trichophyton TaxID=5550 RepID=A0A022W791_TRIRU) HSP 1 Score: 77.4 bits (189), Expect = 7.330e-15 Identity = 46/135 (34.07%), Postives = 64/135 (47.41%), Query Frame = 1
Query: 1 VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCE----VKIFNNGGGSPGQPCVSL--VVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEYF 387
VAAR + A +V L+ V ++QV N H+ L+SD+ NHSC PN ++ G PG P V IP GE + Y + E ++S PF C CGA+ C G + G K A E+ Y+
Sbjct: 72 VAARDIPAASLVARNSSTTLAAVKAYSTVQVSRNAHIELNSDLLYCNHSCDPNVRFVTSTLAADSLAGPPGAPVAGALEVWSTRAIPAGEELRFFYPSTEWEMSQPFRCSCGASQCLGWVDGAKKTAAEVLQRYW 206
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A4D9CGW1_MASLA (SET domain-containing protein-lysine N-methyltransferase n=4 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A4D9CGW1_MASLA) HSP 1 Score: 73.6 bits (179), Expect = 6.280e-14 Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 1
Query: 4 AARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISN-PFDCLCGATNCRGRITGFSKLAREIQAEY 384
A R A E+V + ++ +TRH+ Q+ +N++V M+ NHSC PNC +++ GG +V + I GE IT DY I + P C+CG+ CRG++TG+ L+ + EY
Sbjct: 19 ATRTFKAGEIVVVGIIEKILDKNTRHASQIAQNKYVLHAGLMAKVNHSCDPNCGIRVNETGGHD--------IVAMKNIGVGEEITYDYAMGNYYIDHFPPKCICGSKECRGKVTGWKDLSATRKKEY 138
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A0D1YH14_9PEZI (Uncharacterized protein n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D1YH14_9PEZI) HSP 1 Score: 73.9 bits (180), Expect = 9.680e-14 Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query: 34 VFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVA---EIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEYF 387
+F R+ V S+Q EN H+ L+SD+ NHSC P+ IF+ +RVA ++ +G+ +T Y + E ++ PFDC CG++ C+GRI+G L+ EI EY+
Sbjct: 66 LFARITNASPAVKAYTSVQTSENDHIELNSDLVYCNHSCDPSL---IFDMS---------RFEIRVAPHRDLKKGDALTFWYPSSEWEMDQPFDCTCGSSQCKGRISGAKDLSDEILREYW 174
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A3L7SNG7_9BACT (Cyanophycin synthetase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SNG7_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 3.450e-13 Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 1
Query: 4 AARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISN-PFDCLCGATNCRGRITGFSKLAREIQA 378
A+R + A E + R G + +RH++QV HV D + TNHSC PNC V+I G+ + L A + GE +T+DY+ E ++ + C CGA CRGR+TG+ L+ E++A
Sbjct: 911 ASRPIAAGETIL-RAWGPILAKRSRHTMQVDATTHVLPDGVIVHTNHSCEPNCVVRI------RAGEREIVLEALRA-LATGEELTVDYDTFEYEVEHLGGPCRCGAAKCRGRVTGYKHLSAEVKA 1028
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: UPI00195C5168 (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Lentzea nigeriaca TaxID=1128665 RepID=UPI00195C5168) HSP 1 Score: 71.6 bits (174), Expect = 3.870e-13 Identity = 44/134 (32.84%), Postives = 67/134 (50.00%), Query Frame = 1
Query: 1 VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLT-----------NHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLARE 369
VA R + E++F V GE++TV TR+++QVG + HV + ++ NHSC P +F G V+ + + G+ IT +YN E D++ PF C CG+ C GR+ GF L+ E
Sbjct: 25 VANRPITEGELLFT-VEGEVTTVPTRYTVQVGRDTHVDVPAEYDFEAILDRFYWRFMNHSCDPT----VFVRGRA---------VISLKPVEFGQDITFNYNTTEFDMAEPFACRCGSDRCSGRVQGFRHLSGE 144
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A238FUS3_9BASI (BQ2448_7997 protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FUS3_9BASI) HSP 1 Score: 71.6 bits (174), Expect = 9.560e-13 Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 103 QHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEYF 387
+H+ L+SD+ NHSC PN + VV + ++ +GE++T Y + E D+ PF CLCGA+ C G ITG ++A EI + YF
Sbjct: 87 RHIELNSDLLFVNHSCDPNVAFNLNTRDDWK--------VVALKDLKQGEIMTFAYFSTEWDMDQPFQCLCGASQCLGTITGAKEIAPEILSMYF 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51373.12397.1 >prot_H-elongata_contig51373.12397.1 ID=prot_H-elongata_contig51373.12397.1|Name=mRNA_H-elongata_contig51373.12397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCback to top mRNA from alignment at H-elongata_contig51373:443..1340- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51373.12397.1 ID=mRNA_H-elongata_contig51373.12397.1|Name=mRNA_H-elongata_contig51373.12397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=898bp|location=Sequence derived from alignment at H-elongata_contig51373:443..1340- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51373:443..1340- >mRNA_H-elongata_contig51373.12397.1 ID=mRNA_H-elongata_contig51373.12397.1|Name=mRNA_H-elongata_contig51373.12397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig51373:443..1340- (Himanthalia elongata Himel1 dioecious)back to top |