mRNA_H-elongata_contig51373.12397.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51373.12397.1
Unique NamemRNA_H-elongata_contig51373.12397.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A6H5K6N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N9_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.260e-33
Identity = 59/128 (46.09%), Postives = 85/128 (66.41%), Query Frame = 1
Query:    1 VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEY 384
            VAAR L A +V+F RV G ++ V TRHS+Q+ + +H+   SD++L NHSC PNC++++ +       QP + + VR   +   E + IDYNAME+D++ PFDC CGA  CRG ++GFS L+R  Q EY
Sbjct:  115 VAARVLEANQVLFSRVEGLVTGVKTRHSVQLSKERHLETGSDLALMNHSCEPNCQLEVVDTAE----QPYLRVTVRAPRVQPNEALEIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEY 238          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: D8LGU6_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.010e-21
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  139 NHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEY 384
            NHSC PNC++++ +       QP + + VR   +   E++TIDYNAME+D++ PFDC CGA  CRG ++GFS L+R  Q EY
Sbjct:    2 NHSCEPNCQLEVVDTAE----QPYLRVTVRAPRVQPSELLTIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEY 79          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A3P3YAV3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YAV3_PLABS)

HSP 1 Score: 83.6 bits (205), Expect = 1.230e-17
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    4 AARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAE 381
            A   L     VF+ VG E+ ++  ++++Q+ + QH+     +   NHSC PNC+ ++            +  +V + +I  G+ IT DYN  E D+++PFDC+CGA+NC+ R+ GF  L    +A+
Sbjct:   38 AVAALKTGTTVFEEVG-EVRSLPDKYTLQLDDGQHMLCAGPLIFCNHSCEPNCKAQVEYG---------LVRMVAIKQINAGDPITFDYNTTEWDMASPFDCICGASNCKKRVAGFKNLTPAQKAD 153          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A6H5JKC4_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.670e-15
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  148 CAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEY 384
            C+ N      N       QP + + VR   I   E++TIDYNAME+D+S PFDC CGA  CRG ++GFS L+R  Q EY
Sbjct:  253 CSNNRRAHAMNTFCNPQEQPYLRVTVRAPRIRPNELLTIDYNAMEIDMSCPFDCQCGAVRCRGWVSGFSNLSRAEQKEY 331          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A022W791_TRIRU (Post-SET domain-containing protein n=9 Tax=Trichophyton TaxID=5550 RepID=A0A022W791_TRIRU)

HSP 1 Score: 77.4 bits (189), Expect = 7.330e-15
Identity = 46/135 (34.07%), Postives = 64/135 (47.41%), Query Frame = 1
Query:    1 VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCE----VKIFNNGGGSPGQPCVSL--VVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEYF 387
            VAAR + A  +V       L+ V    ++QV  N H+ L+SD+   NHSC PN          ++  G PG P      V     IP GE +   Y + E ++S PF C CGA+ C G + G  K A E+   Y+
Sbjct:   72 VAARDIPAASLVARNSSTTLAAVKAYSTVQVSRNAHIELNSDLLYCNHSCDPNVRFVTSTLAADSLAGPPGAPVAGALEVWSTRAIPAGEELRFFYPSTEWEMSQPFRCSCGASQCLGWVDGAKKTAAEVLQRYW 206          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A4D9CGW1_MASLA (SET domain-containing protein-lysine N-methyltransferase n=4 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A4D9CGW1_MASLA)

HSP 1 Score: 73.6 bits (179), Expect = 6.280e-14
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 1
Query:    4 AARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISN-PFDCLCGATNCRGRITGFSKLAREIQAEY 384
            A R   A E+V   +  ++   +TRH+ Q+ +N++V     M+  NHSC PNC +++   GG          +V +  I  GE IT DY      I + P  C+CG+  CRG++TG+  L+   + EY
Sbjct:   19 ATRTFKAGEIVVVGIIEKILDKNTRHASQIAQNKYVLHAGLMAKVNHSCDPNCGIRVNETGGHD--------IVAMKNIGVGEEITYDYAMGNYYIDHFPPKCICGSKECRGKVTGWKDLSATRKKEY 138          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A0D1YH14_9PEZI (Uncharacterized protein n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D1YH14_9PEZI)

HSP 1 Score: 73.9 bits (180), Expect = 9.680e-14
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   34 VFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVA---EIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEYF 387
            +F R+      V    S+Q  EN H+ L+SD+   NHSC P+    IF+              +RVA   ++ +G+ +T  Y + E ++  PFDC CG++ C+GRI+G   L+ EI  EY+
Sbjct:   66 LFARITNASPAVKAYTSVQTSENDHIELNSDLVYCNHSCDPSL---IFDMS---------RFEIRVAPHRDLKKGDALTFWYPSSEWEMDQPFDCTCGSSQCKGRISGAKDLSDEILREYW 174          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A3L7SNG7_9BACT (Cyanophycin synthetase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SNG7_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 3.450e-13
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    4 AARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISN-PFDCLCGATNCRGRITGFSKLAREIQA 378
            A+R + A E +  R  G +    +RH++QV    HV  D  +  TNHSC PNC V+I        G+  + L    A +  GE +T+DY+  E ++ +    C CGA  CRGR+TG+  L+ E++A
Sbjct:  911 ASRPIAAGETIL-RAWGPILAKRSRHTMQVDATTHVLPDGVIVHTNHSCEPNCVVRI------RAGEREIVLEALRA-LATGEELTVDYDTFEYEVEHLGGPCRCGAAKCRGRVTGYKHLSAEVKA 1028          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: UPI00195C5168 (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Lentzea nigeriaca TaxID=1128665 RepID=UPI00195C5168)

HSP 1 Score: 71.6 bits (174), Expect = 3.870e-13
Identity = 44/134 (32.84%), Postives = 67/134 (50.00%), Query Frame = 1
Query:    1 VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLT-----------NHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLARE 369
            VA R +   E++F  V GE++TV TR+++QVG + HV + ++               NHSC P     +F  G           V+ +  +  G+ IT +YN  E D++ PF C CG+  C GR+ GF  L+ E
Sbjct:   25 VANRPITEGELLFT-VEGEVTTVPTRYTVQVGRDTHVDVPAEYDFEAILDRFYWRFMNHSCDPT----VFVRGRA---------VISLKPVEFGQDITFNYNTTEFDMAEPFACRCGSDRCSGRVQGFRHLSGE 144          
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Match: A0A238FUS3_9BASI (BQ2448_7997 protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FUS3_9BASI)

HSP 1 Score: 71.6 bits (174), Expect = 9.560e-13
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  103 QHVSLDSDMSLTNHSCAPNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNPFDCLCGATNCRGRITGFSKLAREIQAEYF 387
            +H+ L+SD+   NHSC PN    +               VV + ++ +GE++T  Y + E D+  PF CLCGA+ C G ITG  ++A EI + YF
Sbjct:   87 RHIELNSDLLFVNHSCDPNVAFNLNTRDDWK--------VVALKDLKQGEIMTFAYFSTEWDMDQPFQCLCGASQCLGTITGAKEIAPEILSMYF 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51373.12397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6N9_9PHAE4.260e-3346.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGU6_ECTSI4.010e-2147.56Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A3P3YAV3_PLABS1.230e-1732.54Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A6H5JKC4_9PHAE6.670e-1546.84Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A022W791_TRIRU7.330e-1534.07Post-SET domain-containing protein n=9 Tax=Trichop... [more]
A0A4D9CGW1_MASLA6.280e-1432.81SET domain-containing protein-lysine N-methyltrans... [more]
A0A0D1YH14_9PEZI9.680e-1433.88Uncharacterized protein n=1 Tax=Verruconis gallopa... [more]
A0A3L7SNG7_9BACT3.450e-1335.71Cyanophycin synthetase n=1 Tax=Planctomycetes bact... [more]
UPI00195C51683.870e-1332.84SET domain-containing protein-lysine N-methyltrans... [more]
A0A238FUS3_9BASI9.560e-1336.84BQ2448_7997 protein n=1 Tax=Microbotryum intermedi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51373contigH-elongata_contig51373:443..1340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.6
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog63400.XP_003015576.1
EggNOG free text desc.Cysteine-rich motif following a subset of SET domains
EggNOG OGs20T9F@147545,2DY4I@1,2S6TY@2759,3A8V3@33154,3B36D@33183,3FSPK@34384,3Q3BF@4751,3RKD3@4890
COG Functional cat.S
Best tax levelArthrodermataceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.713915-CDS-H-elongata_contig51373:442..6251622930840.713915-CDS-H-elongata_contig51373:442..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51373 443..625 -
1691679592.971052-CDS-H-elongata_contig51373:442..6251691679592.971052-CDS-H-elongata_contig51373:442..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51373 443..625 -
1622930840.731797-CDS-H-elongata_contig51373:1136..13401622930840.731797-CDS-H-elongata_contig51373:1136..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51373 1137..1340 -
1691679592.9825048-CDS-H-elongata_contig51373:1136..13401691679592.9825048-CDS-H-elongata_contig51373:1136..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51373 1137..1340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51373.12397.1prot_H-elongata_contig51373.12397.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51373 443..1340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51373.12397.1

>prot_H-elongata_contig51373.12397.1 ID=prot_H-elongata_contig51373.12397.1|Name=mRNA_H-elongata_contig51373.12397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
VAARKLLAREVVFDRVGGELSTVSTRHSIQVGENQHVSLDSDMSLTNHSC
APNCEVKIFNNGGGSPGQPCVSLVVRVAEIPEGEMITIDYNAMEVDISNP
FDCLCGATNCRGRITGFSKLAREIQAEYF
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mRNA from alignment at H-elongata_contig51373:443..1340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51373.12397.1 ID=mRNA_H-elongata_contig51373.12397.1|Name=mRNA_H-elongata_contig51373.12397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=898bp|location=Sequence derived from alignment at H-elongata_contig51373:443..1340- (Himanthalia elongata Himel1 dioecious)
GTGGCGGCGCGTAAACTGTTGGCGAGGGAAGTCGTCTTCGATCGCGTGGG AGGGGAATTGTCGACCGTCAGCACCCGCCATAGCATCCAAGTCGGTGAGA ATCAGCACGTGAGTTTGGATAGTGACATGTCCCTGACCAACCACAGCTGC GCACCTAACTGTGAGGTCAAGATCTTCAATAATGGCGGAGGGTCTCCAGG CCAGGTGCGGAACGAACGCTGACGATTAATGGTGGCTCTAATAATTATGT GCAGTAATTTCGCATAGTCCAATTATTTTTAATATATCTATTTTGTCCTA AGGAGCGTCGACGCCGCCGTTGTTGGAATATTCTGCGCTGGTTCGGGATG TCTACGATCCCTAGAGAATGCATGGCCATCTTTTTCCGGATTGATTTCGC GTTACAATGTGCGGTTACGCAGTAGTGTAGTGTCTACCTCTGACCCAATA AGTTAGTTCGATATTTGAAAAACAATAACAACGTTCTCCAGTGGAGAATG TATCCTCGTGCATCGTAAGTACAAAATAGTTCAATATGGGTATGTTTTCT TCGTTATCCCGCGGCACTGCTGTTGCAATTAGTTAGTTTTGCTATCGGTG CTGCGTGATGAAGATCCTCATGACACCCCAGTTGATAACCTTTCCCCCCC GCCTCCCGTGCCCGCGGGATTGGGACCCCACCCCCCTCCCGGCACATTTC CAATTCCACAAGGAGCCATGTGTCAGCCTCGTGGTGCGGGTGGCTGAGAT CCCGGAGGGCGAGATGATAACTATTGATTACAACGCCATGGAGGTCGATA TATCGAATCCGTTTGACTGTTTGTGTGGTGCCACCAACTGCCGTGGCCGC ATCACTGGGTTCTCGAAGCTCGCCCGCGAAATTCAGGCGGAATACTTT
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Coding sequence (CDS) from alignment at H-elongata_contig51373:443..1340-

>mRNA_H-elongata_contig51373.12397.1 ID=mRNA_H-elongata_contig51373.12397.1|Name=mRNA_H-elongata_contig51373.12397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig51373:443..1340- (Himanthalia elongata Himel1 dioecious)
GTGGCGGCGCGTAAACTGTTGGCGAGGGAAGTCGTCTTCGATCGCGTGGG
AGGGGAATTGTCGACCGTCAGCACCCGCCATAGCATCCAAGTCGGTGAGA
ATCAGCACGTGAGTTTGGATAGTGACATGTCCCTGACCAACCACAGCTGC
GCACCTAACTGTGAGGTCAAGATCTTCAATAATGGCGGAGGGTCTCCAGG
CCAGGTGGCGGCGCGTAAACTGTTGGCGAGGGAAGTCGTCTTCGATCGCG
TGGGAGGGGAATTGTCGACCGTCAGCACCCGCCATAGCATCCAAGTCGGT
GAGAATCAGCACGTGAGTTTGGATAGTGACATGTCCCTGACCAACCACAG
CTGCGCACCTAACTGTGAGGTCAAGATCTTCAATAATGGCGGAGGGTCTC
CAGGCCAGCCATGTGTCAGCCTCGTGGTGCGGGTGGCTGAGATCCCGGAG
GGCGAGATGATAACTATTGATTACAACGCCATGGAGGTCGATATATCGAA
TCCGTTTGACTGTTTGTGTGGTGCCACCAACTGCCGTGGCCGCATCACTG
GGTTCTCGAAGCTCGCCCGCGAAATTCAGGCGGAATACTTTCCATGTGTC
AGCCTCGTGGTGCGGGTGGCTGAGATCCCGGAGGGCGAGATGATAACTAT
TGATTACAACGCCATGGAGGTCGATATATCGAATCCGTTTGACTGTTTGT
GTGGTGCCACCAACTGCCGTGGCCGCATCACTGGGTTCTCGAAGCTCGCC
CGCGAAATTCAGGCGGAATACTTT
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