mRNA_H-elongata_contig51325.12392.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: D8LKA2_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA2_ECTSI) HSP 1 Score: 290 bits (741), Expect = 1.030e-89 Identity = 226/421 (53.68%), Postives = 258/421 (61.28%), Query Frame = 1
Query: 1 AKTICILSTRKFGPSDAVAFSNALAENTSLVELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALVEGLRRNHGLLVLDLEYKSISAGDALCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGLRCSSTLSRLDLSGNKLDAAAVEAIGRALCCSLPSPADLREGGEKAG---------------HPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRT------DGQLV-----------GKQQGLPQLRTLDLSKNKLGANGAVELAGALSRGGAPLLGTLLMGYNGVGDKGAATLGKAAGRVLRVLDLGGNSLSGEGVKAVLSAPGLREARLFYNVCGDDGVPLVLEALRAGSVLETLDLGANGL 1167
A T+CILSTRKFGPS+A AFS AL+ NTSL ELLASGHPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXX HGLLVLDLEYKSI++G+ L TLL+ HP+LA+L+LGRNQLGE G K LS GL +STL RLD+SGN+L+AAA EA+GRALC P+ + G G LEFLD+SRN LGDEGG AL R LAT S TL L +AEA LG AAALA L P A+ GGG + G++ GL +L+ LD+SKN+LG G E+AGALSRGGAP L TL M YN VGD GAA LREA+LF+N C D+GVPLVLEAL AG L+TLDLGANGL
Sbjct: 22 ASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLNSTLLRLDVSGNQLNAAAAEALGRALCTHRPAAIGNQTGTSAVGGSDXXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGAALFRALAT----SPTLTGLVLAEAKLGPLAAAALAEALVPPP----ASPLPGGGGPSGPAEPDSGEMTPLPXXXXXXXXXNGGGLQKLQALDVSKNELGTGGGAEVAGALSRGGAPRLETLSMAYNDVGDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVLEALLAGGTLQTLDLGANGL 434
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: A0A7S2SI57_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SI57_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 5.970e-18 Identity = 132/407 (32.43%), Postives = 188/407 (46.19%), Query Frame = 1
Query: 4 KTICILSTRKFGPSDAVAFSNALAENTSLVELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALVEGLRRNHGLLVLDLEYKSISAG--DALCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGLRCSSTLSRLDLSGNKLDAAAVEAIGRALCCSLPSPADLR--EGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRTDGQLVGKQQGLPQLRTLDLSKNKLGANGAVELAGALSRGGAPLLGTLLMGYNGVGDKGAATLGKAAGRVLRVLDLGGNSLSGE------GVKAVLSAPGLREARLFYNVCGDDGVPLVLEALRAGSVLETLDLGANGLTGAGFEQLL 1194
+T+ ILS R FG + +AF ALA NTSL ELL SGH XXXXXXXXXXXXXXXXXXXXX AL N L ++LEYKS+ G +A+ + L+ +L + LGRN L + + LS G++ S +++ + L N L A + +G +L LR EG + A LD +G EG TL +G G + ++++ G+G AL A + K L+ L++S+NKL + A AL L L + N + G L + G+ L++LDL N ++ E + ++ GL E RL N GD G +V + LRA + ++ L L LT G E +L
Sbjct: 23 ETMLILSNRSFGDKETIAFCKALATNTSLKELLCSGHXXXXXXXXXXXXXXXXXXXXXXXGLGNSNFGDKGVAALFANWE-NSTLTHIELEYKSLGQGAMEAISSALQRENALESILLGRNGLNDTHVEVLSKGIQASPSINHICLKSNVLSATGCKHVGDSL--------RLRDCEGFKLA-------LD-DNERIGCEG----LETLVSGNGTGPVVTEMSLSGCGIGDDGVQALCA-----------------------SMTAKGSCFSSLQVLNISRNKLTESSAEAFGNALKHN--EKLRKLYLARNAIKVDGFFKLSQNLGK-LQLLDLSANGITSEDSGVLDSIMVNIAKSGLVELRLLGNKIGDAGALVVCKGLRANTTIKHLSLAGIELTAKGCEAIL 382
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: A0A2K6FGK9_PROCO (Ribonuclease inhibitor n=5 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6FGK9_PROCO) HSP 1 Score: 71.2 bits (173), Expect = 9.390e-10 Identity = 100/315 (31.75%), Postives = 138/315 (43.81%), Query Frame = 1
Query: 220 RALVEGLR--RNHGLLVLDLEYKSISAG--DALCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGLRCSSTLSRLDLSGNKLDAAAVEAIG-RALCCSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRTDGQLVGKQQGLP--QLRTLDLSKNKLGANGAVELAGALSRGGAPLLGTLLMGYNGVGDKGAATLGKAAGR---VLRVLDLGGNSLSGEG----VKAVLSAPGLREARLFYNVCGDDGVPLVLEALR 1122
R L EGL R H L L LEY +++A + L ++L+ P EL L N LGE G + L GL+ S+ L KL++ V A R LC + S A LRE LDL N LGD G LC L L S L+ L + E G+ A L VL + + G +L+ + P QL +L + L A + L++ + L L M N +GD G LG+ + VLRVL +G ++ G +L+ LRE L N GD GV ++E+LR
Sbjct: 126 RLLCEGLLDPRCH-LERLQLEYCNLTAASCEPLASVLRAKPDFKELMLSNNDLGEAGVRVLCQGLQDSTC----QLESLKLESCGVTAANCRDLCGVVASKASLRE------------LDLGSNQLGDAGLAELCSGL---LRPSSRLRTLWLWECGITAEGCRELCRVLRAKESLKELSLSGNELGDAGARLLCESLLEPGCQLESLWVKTCGLTAACCPHFSSVLAQNKSLL--ELQMSSNKLGDAGVRELGQGLRQPSSVLRVLWIGDCEVTDGGCGSLASTLLANRSLRELDLSNNCMGDPGVLQLIESLR 418
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: UPI0003290E76 (ribonuclease inhibitor n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI0003290E76) HSP 1 Score: 68.9 bits (167), Expect = 5.630e-9 Identity = 106/350 (30.29%), Postives = 143/350 (40.86%), Query Frame = 1
Query: 220 RALVEGLRRNH-GLLVLDLEYKSISAG--DALCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGL-RCSSTLSRLDLSGNKLDAAAVEAIGRALCCSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRTDGQLVGKQQGLPQLRTLDLSKNKLGANGAVELAGALSRGGA-----------------PLLGTLL----------MGYNGVGDKGAATLGKAAG---RVLRVLDLGGNSLSGEGVKAV----LSAPGLREARLFYNVCGDDGVPLVLEALRA-GSVLETLDL 1152
R L EGL+ L L L+Y ++A +AL L+ S EL L N +GE G + L L C+S L +L L G + AA E + R + A L+ LDL N LGD G ALC L LG +L+ L + E + TA+ G R +L+ + LR L L+ N+LG GA L +L G P G++L + N +GD G TL + G LRVL LG ++ G A+ LS PGLRE L N GD GV ++ +L+ G LE L L
Sbjct: 125 RLLCEGLQDPQCNLEKLKLQYCDLTAAGCEALAAALRTKASFRELGLSNNDVGEAGVRALCRCLVECASPLEKLRLEGCGVTAANCEDLSRVV----------------AAKASLQELDLGENRLGDAGLAALCPAL---LGPDCSLRILWLWECDI--------------TAE----------GCRDVCRLL---RAKDSLRELSLAGNQLGDEGARLLCESLREPGCRLESLWVKSCGFTAACCPHFGSMLGHNKSLLELQLSGNALGDAGVQTLCQGLGLPGSALRVLWLGDCEVTDRGCAALAALLLSCPGLRELDLSNNPMGDPGVLQLVGSLQQPGCGLEQLVL 428
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: G3SPV7_LOXAF (Ribonuclease inhibitor n=5 Tax=Loxodonta africana TaxID=9785 RepID=G3SPV7_LOXAF) HSP 1 Score: 67.8 bits (164), Expect = 1.250e-8 Identity = 96/327 (29.36%), Postives = 132/327 (40.37%), Query Frame = 1
Query: 262 VLDLEYKSISAGDALCTLLKDH----PSLAELKLGRNQLGEPGAKDLSMGLRCSST-LSRLDLSGNKLDAAAVEAIGRALCCSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRTDGQLVGKQQGLPQLRTLDLSKNKLGANGAVELAGALSRGGAPLLGTLLMGYNGVGDKGAATLGKA--AGRVLRVLDLGGNSLSGEGVKAVLSA---PGLREARLFYNVCG--DDGVPLVLEALRAGSVLETLDLGANGLTGAGFEQLLPGLA 1206
+ L ++ S A CT+L P+L EL+L N LG+ G + L GLR L R+ L L AA+ E L LP+ LRE L LS N LG+ G LCR L LGA+ L+ L +A G+ A L ++++ T D L+ LDL ++KLG G L L + L TL + + +G + + A L+ L L GN L +G + + A PG R L+ CG D P L L L L N L G +QL GL+
Sbjct: 87 ICKLSLQNCSLTAACCTVLPGTLRWLPTLLELRLSDNPLGDEGLQLLCEGLRDPQCHLERVQLEYCNLTAASCEP----LAAVLPAKLGLRE------------LVLSNNDLGEAGVQVLCRGL---LGATCPLETLKLASCGVTAANCKDLCSIVA-TKD--------------------------SLQELDLGESKLGDAGMAALCPGLLSPSSKLK-TLWLWECDISSEGCREISQVLRAKESLKELSLMGNELGDQGARLLCEALREPGCRLESLWVKACGFTDACCPDFSTMLAQNKFLLELQLSNNKLGDTGVQQLCQGLS 366
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: A0A1V9Z111_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z111_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.640e-8 Identity = 92/341 (26.98%), Postives = 144/341 (42.23%), Query Frame = 1
Query: 226 LVEGLRRNHGLLV--LDLEYKSIS--AGDALCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGLRCSSTLSRLDLSGNKLDAAAVEAIGRALCCSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRTDGQLVGKQQGLPQLRTLDLSKNKLGANGAVELAGALSRGGAPLLGTLLMGYNGVGDKGAATLGKAAGRVLRVLDLGGNSLSGEGVKAVLSAPGLREARLFYNVCGDDGVPLVLEALRAGSVLETLDLGANGLTGAGFEQLLPGLAACPGLQTLEV 1236
L GL N + D+E KSI A+ +L + S+ +L + RN++ PG + L +GL S+ L LD++ N L + S P+ + L+ ++++ N LGD ++LA + ++++L ++ L + AAL LS + D + G Q R L L+K KLG A +L KA +L LDL N+L+ G+ L++P ++E R+F N G+ GV VL + A VL++LD+GANGL G L L L+TLEV
Sbjct: 96 LCNGLGNNSNSKIESFDMELKSIGNDGASAMGEILAKNNSIRQLVVARNRIQTPGFEQLVLGLNASNYLEELDIAENNLTLLNEDGSNLVQWISKPNCS-------------LKIVNIAGNPLGDS-AVVFLKSLAI----NTSIESLNLSSTELTSAAWAALGYALSKNSXXXXXXXXXXXXXXXDEFITGVAQNKGLTR-LVLAKTKLGDEVAKKL-------------------------------KAPSSLLH-LDLSANNLTSIGMLPHLASP-IQELRVFDNSLGN-GVYDVLPTIVANPVLQSLDVGANGLHGKLSIALFEALHIPTALKTLEV 383
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: UPI0007A6E2E8 (ribonuclease inhibitor n=1 Tax=Miniopterus natalensis TaxID=291302 RepID=UPI0007A6E2E8) HSP 1 Score: 66.6 bits (161), Expect = 2.980e-8 Identity = 92/311 (29.58%), Postives = 131/311 (42.12%), Query Frame = 1
Query: 304 LCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGL---RCSSTLSRLDLSGNKLDAAAVEAIGRALCCSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRTDGQLVGKQQGLPQLRTLDLSKNKLGANGAVELA-GALSRGGAPLLGTLLMGYNGVGDKGAATLGKA--AGRVLRVLDLGGNSLSGEGVKAV---LSAPGLREARLFYNVCGDDGV--PLVLEALRAGSVLETLDLGANGLTGAGFEQLLPGL 1203
L ++L+ PSL EL L NQLG+ G + L GL +C + RL L + L AA+ E P + LR E L+ L ++ N +G+ GG ALCR LA ++ L++L + GL + AN + L G LRTL+L NKLG G EL G LS + L TL + + G L + A L+ L L GN++ EG++ + L P + L+ C P V L L+ L + +N L G E+L GL
Sbjct: 109 LSSVLRSLPSLCELDLSYNQLGDAGLRLLCEGLLDPQCH--IERLQLEYSNLTAASCE----------PLASVLRAKRE------LKELGVNNNDIGEAGGQALCRGLAE---STCPLESLKLEGCGL------------------TSANCQ---------DLCGIVAAKASLRTLELGNNKLGDAGITELCPGLLSP--SSRLKTLWLWECDITVSGCRDLCRVLRAKESLKELSLAGNAVGNEGIQLLCESLVQPSCQLESLWVKSCSLTAACCPRVGAMLAQNRSLQELQMSSNNLGDVGVEELCQGL 369
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: H0X4W2_OTOGA (Ribonuclease inhibitor n=3 Tax=Otolemur garnettii TaxID=30611 RepID=H0X4W2_OTOGA) HSP 1 Score: 65.9 bits (159), Expect = 5.190e-8 Identity = 99/334 (29.64%), Postives = 133/334 (39.82%), Query Frame = 1
Query: 265 LDLEYKSISAGDA--LCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGLRCSSTLSRLDLSGNKLDAAAVEAIG-RALCCSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAEAGLGAGTAAALAAVLSPTADVSGANTEREGGGRTDGQLVGKQQGLPQLRTLDLSKNKLGANGAVELAGALSRGGA-----------------PLLGTLL----------MGYNGVGDKGAATLGKAAGR---VLRVLDLGGNSLSGEGVKAVLSA----PGLREARLFYNVCGDDGVPLVLEALRA-GSVLETLDL 1152
L LEY +++A L ++L+ P EL + N L E G + L GL+ S+ L KL+ V A R LC ++ S L+ LDL N LGD G T LC+ L L S L+ L + E G+ A L +L L LR L L+ N+LG GA L +L G PL ++L M N +GD G TL + G+ VLRVL LG +S G ++ S LRE L N GD+GV ++ +LR G LE L L
Sbjct: 144 LQLEYCNLTAASCEFLASVLRAKPDFKELIVSNNDLSEAGVRTLCQGLKDSAC----PLEALKLENCGVTAANCRDLCSAVASKTS------------LQALDLGSNRLGDAGLTELCQGL---LRPSFRLRTLWLWECGITAEGCHELCRMLCS---------------------------LESLRELSLAGNELGDAGAQLLCESLLAPGCRLESLWVKTCSLTAACCPLFSSVLAQNKCLLELQMSSNPLGDVGVQTLCQGLGQPGTVLRVLWLGDCDVSDVGCSSLASTLLANHSLRELDLSNNRMGDEGVRQLMGSLRQPGCALEQLVL 431
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: A0A1S3AL26_ERIEU (Ribonuclease inhibitor n=2 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3AL26_ERIEU) HSP 1 Score: 65.9 bits (159), Expect = 5.540e-8 Identity = 105/348 (30.17%), Postives = 133/348 (38.22%), Query Frame = 1
Query: 220 RALVEGLRRNHGLLV-LDLEYKSISAGD--ALCTLLKDHPSLAELKLGRNQLGEPGAKDLSMGLRCS-STLSRLDLSGNKLDAAAVEAIGRALCCSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATG-------------------------LGASRTLKNLAMA------EAGLGAGTAAALAAVLSPTADVSGANTER---EGGGRTDGQLVGKQQGLPQ---LRTLDLSKNKLGANGAVELAGALSRGGAPLLGTLLMGYNGVGDKGAATLGKAAG--RVLRVLDLGGNSLSGEGVKAVLSAPGLREARL----FYNVCGDDGVPLVLEALR 1122
R L EGLR L L LEY ++A AL +L+D P + EL L N+LG+ G ++L L S L L KLD+ C L A G + P L LDL N LGD G ALC LGA TL+ L++A +AG G +L T G E + G T L + L+ L LS N+LG G EL AL + GA L L +G V D G +L R LR LDL N L GV +L E L Y++ + V L+AL
Sbjct: 159 RLLCEGLRAPQCHLERLQLEYCGLTAAGCGALAAVLRDKPDVKELVLSNNELGDAGMRELVRSLAAGPSALETL-----KLDS-----------CGLGPEACSELSGLLSAKPSLRELDLGSNALGDAGVAALCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVLGAKETLRELSLAGNEELGDAGCG---------LLCETLLGGGCQLETLWVKSCGLTAASCPAWASVLTRTQKLQELQLSGNRLGDTGVRELCEALGQPGATLR-VLWLGDCEVTDSGCESLASLLRDTRSLRELDLSNNGLGDAGVLLLLGCLERPECPLEQLVLYDIYWTEAVEQQLQALE 480
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Match: A0A1W4X4J4_AGRPL (dynein regulatory complex subunit 5 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4X4J4_AGRPL) HSP 1 Score: 65.5 bits (158), Expect = 7.180e-8 Identity = 56/166 (33.73%), Postives = 77/166 (46.39%), Query Frame = 1
Query: 220 RALVEGLRRNHGLLVLDLEYKSISAGDALCT--LLKDHPSLAELKLGRNQLGEPGAKDLSMGL--RCSSTLSRLDLSGNKLDAAAVEAIGRALC------------CSLPSPADLREGGEKAGHPPLEFLDLSRNHLGDEGGTALCRTLATGLGASRTLKNLAMAE 669
+AL++ L +N L+ LDL + I A C L+ HP L LKL N +G+ GA+ + L L LD+ N L I R+L C + +R G + LEFLD+S N LGDEGG A+ R L +RTLKN+ + E
Sbjct: 258 QALMQCLLQNETLVELDLSHDHIGDHGAKCIAKLMTVHPKLNILKLTNNFIGQEGAEAIGFALLQETCCPLVLLDMRLNPLKHDGAMGILRSLVRGEKPKELSLASCEIEDVTAMRVGQMMCLNHTLEFLDVSSNWLGDEGGEAILRCLMN----NRTLKNIDLRE 419 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51325.12392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51325.12392.1 >prot_H-elongata_contig51325.12392.1 ID=prot_H-elongata_contig51325.12392.1|Name=mRNA_H-elongata_contig51325.12392.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=412bp AKTICILSTRKFGPSDAVAFSNALAENTSLVELLASGHPLGRAEAASFGDback to top mRNA from alignment at H-elongata_contig51325:1238..3668+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51325.12392.1 ID=mRNA_H-elongata_contig51325.12392.1|Name=mRNA_H-elongata_contig51325.12392.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-elongata_contig51325:1238..3668+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51325:1238..3668+ >mRNA_H-elongata_contig51325.12392.1 ID=mRNA_H-elongata_contig51325.12392.1|Name=mRNA_H-elongata_contig51325.12392.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2472bp|location=Sequence derived from alignment at H-elongata_contig51325:1238..3668+ (Himanthalia elongata Himel1 dioecious)back to top |