mRNA_H-elongata_contig51321.12391.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51321.12391.1
Unique NamemRNA_H-elongata_contig51321.12391.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: A0A2K9LA65_9RHOO (Uncharacterized protein n=3 Tax=Rhodocyclales TaxID=206389 RepID=A0A2K9LA65_9RHOO)

HSP 1 Score: 82.8 bits (203), Expect = 1.240e-16
Identity = 59/167 (35.33%), Postives = 82/167 (49.10%), Query Frame = 1
Query:   34 ARRGKHYRIAAYLSKGHDPNELDERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWAGSELEIPGLAPR---------------------------NNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKGH 453
            AR G   +++A L++G DPN +D +G S L +A   GH D V +LL        R   G S L  A+ + H  V+  L+ AG+ LE  G AP                            N  TAL+LAAR GH++ V+ LLGAGAD +L + R  TA  +A  +G+
Sbjct:   38 ARLGDTRQLSALLARGLDPNTVDAQGNSLLILAAREGHVDTVASLLPYRPKLGWRNLAGDSALMLAVLKGHEAVVDLLLEAGAPLEHDGWAPLHYAAFEGRLSILDKLLARGAAIDALTPNRATALMLAARNGHIQVVRRLLGAGADPALKNDRGLTAAQWARAQGN 204          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: A0A2T4IJJ5_9RHOO (Uncharacterized protein n=1 Tax=Thauera lacus TaxID=2136175 RepID=A0A2T4IJJ5_9RHOO)

HSP 1 Score: 68.2 bits (165), Expect = 4.880e-11
Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = 1
Query:   28 LFARRGKHYRIAAYLSKGHDPNELDERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWAGSELEIPGLAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKGH 453
            L AR G    + A L      ++ +  G SAL +A + GH      LLEAG   N    EG +PL  A  E    +++  +  G++++   LAP N  TAL+LAAR GH+E V+ LL AGAD +L + R   A  +A   G+
Sbjct:   70 LAAREGMLSTVQAILQYRPRVSQRNLAGDSALMLATLGGHEAVADALLEAGAELNH---EGWNPLLYAAFEGRLGLLQKFLQRGADID--ALAP-NRSTALMLAARNGHIEVVRTLLAAGADTALVNDRGIDAATWARQVGN 205          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: UPI001FB18CB4 (potassium channel AKT1-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB18CB4)

HSP 1 Score: 69.7 bits (169), Expect = 5.310e-11
Identity = 51/156 (32.69%), Postives = 71/156 (45.51%), Query Frame = 1
Query:   70 LSKGHDPNELDERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWAGSEL-------------------------EIPG---LAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKGH 453
            L +GHDPNE D  GR+AL IA  +G+ + V  LL+   + N R  EG  PL  A+  N   ++  L+  G+ L                          + G   LA +N  TAL +A    +LE V+ LL  GAD+ + D   WT    A  +GH
Sbjct:  535 LKRGHDPNEADNNGRTALHIAASNGYENCVLHLLDFQADPNSRDLEGNVPLWDAILANKEAMVELLLKKGANLTNGDVGQYACFAAEQKDLGLLEKIVRLGGNIKLANKNGTTALHVAVSEDNLEMVKFLLDKGADMEIPDNHGWTPRGLADQQGH 690          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: A0A0M3IJ51_ASCLU (Uncharacterized protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IJ51_ASCLU)

HSP 1 Score: 67.8 bits (164), Expect = 2.450e-10
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   70 LSKGHDPNELDERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWAGSELEIPGLAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKG 450
            L  G   N  D  GR+A+  A  +G+TDA+ +L++AGG+      + +S L  A    H  V+  LI +  +L I  +  RN  T L  A   GH E  ++LL +GA+ +  D R  TA H AA KG
Sbjct:   39 LKNGASVNGKDIDGRTAILWAASNGNTDAMLSLIQAGGDRLAVDRDRLSALHCAASHGHEHVLELLIESSDKLIIDAV-DRNGDTPLFYAVTLGHFECARLLLLSGANANHQDFRLRTAAHCAAAKG 164          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: A0A836BBB8_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBB8_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 2.480e-10
Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 1
Query:    4 SPRCDSLHLFARRGKHYRIAAYLSKGHDPNELDERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWA-GSELEIPGLAPRNNKTALVLAARAGHLEAVQMLLGAGADVS 399
            +P C SL L +R+G + R  AYL +     +    G +A+  A  HGH D ++ LL AGG+A     EG   L  A   +HP VM DLI   G+    PG A    + AL+ AA  G L+AVQ+LLG G+ ++
Sbjct:  149 TPVC-SLLLGSRQGGN-RGRAYLLR-----QATRGGETAVHAAAKHGHLDTLQALLAAGGDAAAVDKEGRDCLMMAAANDHPNVMSDLIHTCGAH---PGRADAQGRNALMHAAGCGSLQAVQLLLGLGSQLT 271          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: A0A3M2SKA8_9HYPO (Protein SSH4 n=1 Tax=Fusarium kuroshium TaxID=2010991 RepID=A0A3M2SKA8_9HYPO)

HSP 1 Score: 66.6 bits (161), Expect = 6.680e-10
Identity = 43/139 (30.94%), Postives = 75/139 (53.96%), Query Frame = 1
Query:   22 LHLFARRGKHYRIAAYLSKGHDPNELDERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWAGSELEIPGLAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFA 438
            LH+ A RG    +   +  G D + ++ +  +A+++A  HG  DAVK LL+A  N NLR+ +  +PL A  G +  E++  L+    E ++         TAL++A   G+ + +  +L   AD+++ D +  TA+HFA
Sbjct: 1456 LHMAAIRGDKDTVQKLIDLGADLDAVNNKKETAVYLAAWHGRIDAVKCLLDARANPNLRSGKTWAPLHA--GADSAEILDALL--SHEAKVDYAEAIGGWTALMIAVFWGNEQGIPTILSWKADINIGDGQGRTALHFA 1590          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: C1FF92_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FF92_MICCC)

HSP 1 Score: 65.5 bits (158), Expect = 7.320e-10
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  100 DERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIW-AGSELEIPGLAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKG 450
            D  GR+AL +A   G  DA + L+  G +A     EG++PL  A     P  +++L+  AG++   P  A    +T +++AAR G +E++ +L+  G D+SL D  DW A+  A  +G
Sbjct:  146 DGDGRTALMVAASSGSLDACRELIRRGASARAMDAEGLTPLLHACWGRSPGCVKELLESAGAD---PNQADFCGETPVMVAARLGDVESLNLLISHGCDLSLRDENDWDALGKAKARG 260          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: UPI0018E55936 (NF-kappa-B inhibitor cactus-like n=3 Tax=Coliadinae TaxID=42450 RepID=UPI0018E55936)

HSP 1 Score: 65.9 bits (159), Expect = 8.680e-10
Identity = 45/153 (29.41%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   22 LHLFARRGKHYRIAAYLSKGHDPNELD---ERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWAGSEL---EIPGLAPRNN---KTALVLAARAGHLEAVQMLLGAGADVSLADR-RDWTAMHFAAWKG 450
            LH+ A  G    +   +    D   LD   + G +AL +A + GH    + L+ AG    +R   G +P   A+  N+P+ ++ L+   SE+   ++  +  + N   +T + LAA AGH++ +QML+  GAD++  +    WT +H AA +G
Sbjct:  117 LHIAAVHGCEKSVGTLIRVCPDKAWLDIPNDYGHTALHLAVLAGHAVVTRMLVRAGAALGIRDHTGSTPFHLAVERNNPDCLQALLGRSSEIPPRKLSTILDQKNYRGQTCVHLAASAGHVKLIQMLVYYGADINAMEGLAGWTPLHIAAQRG 269          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: UPI00189323E2 (LOW QUALITY PROTEIN: ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI00189323E2)

HSP 1 Score: 65.9 bits (159), Expect = 1.090e-9
Identity = 47/141 (33.33%), Postives = 69/141 (48.94%), Query Frame = 1
Query:   70 LSKGHDPNELDERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGIS-PLDAALGENHPEVMRDLIWAGSELEI-------------PGLAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKG 450
            +S+G D N       SAL  AC  G+ + V+ L++ G + N     G++ PL AA G           W GSE  +             P LA R+  T L+LAAR GH + +++LL  GAD    D + WT++ +AA+ G
Sbjct:   84 ISRGLDVNMECRSNWSALVQACFSGYPEMVQLLVDHGADVNASI--GVTTPLMAACGT----------WKGSEAALVACAEILLKHGAEPDLAGRDGTTPLMLAAREGHCQLIELLLDRGADAKRLDGQGWTSLSWAAYAG 212          
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Match: A0A5A9NI03_9TELE (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NI03_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 6.880e-9
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  100 DERGRSALFIACMHGHTDAVKTLLEAGGNANLRTPEGI---SPLDAALGENHPEVMRDLIWAGSELEIPGLAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKG 450
            D  GR+AL++AC+ GH   V+ LL    + ++R  E I   +PL  A  +   + +  L+    + ++  L  +  +T L+LA R  + + V MLL  G+     +RR+ TA+H+AA  G
Sbjct:  266 DSGGRTALYLACLQGHCRCVEVLLLHEASCSIR--EDIYRWTPLHIAAAKGQADCLLKLLKQAEQNDVINLKDKQGRTPLMLATRGSNTDCVNMLLERGSKPDTGERRNHTALHYAAVVG 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51321.12391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K9LA65_9RHOO1.240e-1635.33Uncharacterized protein n=3 Tax=Rhodocyclales TaxI... [more]
A0A2T4IJJ5_9RHOO4.880e-1136.62Uncharacterized protein n=1 Tax=Thauera lacus TaxI... [more]
UPI001FB18CB45.310e-1132.69potassium channel AKT1-like n=1 Tax=Impatiens glan... [more]
A0A0M3IJ51_ASCLU2.450e-1036.22Uncharacterized protein n=1 Tax=Ascaris lumbricoid... [more]
A0A836BBB8_9CHLO2.480e-1039.10Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A3M2SKA8_9HYPO6.680e-1030.94Protein SSH4 n=1 Tax=Fusarium kuroshium TaxID=2010... [more]
C1FF92_MICCC7.320e-1033.90Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
UPI0018E559368.680e-1029.41NF-kappa-B inhibitor cactus-like n=3 Tax=Coliadina... [more]
UPI00189323E21.090e-933.33LOW QUALITY PROTEIN: ankyrin repeat, SAM and basic... [more]
A0A5A9NI03_9TELE6.880e-931.67Serine/threonine-protein phosphatase 6 regulatory ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51321contigH-elongata_contig51321:2686..3537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog2880.D7FHC0
KEGG koko:K21440
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-03_004020.1
Exons2
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.1656606-CDS-H-elongata_contig51321:2685..28361622930840.1656606-CDS-H-elongata_contig51321:2685..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51321 2686..2836 -
1691679592.7167647-CDS-H-elongata_contig51321:2685..28361691679592.7167647-CDS-H-elongata_contig51321:2685..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51321 2686..2836 -
1622930840.1860673-CDS-H-elongata_contig51321:3235..35371622930840.1860673-CDS-H-elongata_contig51321:3235..3537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51321 3236..3537 -
1691679592.729779-CDS-H-elongata_contig51321:3235..35371691679592.729779-CDS-H-elongata_contig51321:3235..3537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51321 3236..3537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51321.12391.1prot_H-elongata_contig51321.12391.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51321 2686..3537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51321.12391.1

>prot_H-elongata_contig51321.12391.1 ID=prot_H-elongata_contig51321.12391.1|Name=mRNA_H-elongata_contig51321.12391.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
MSPRCDSLHLFARRGKHYRIAAYLSKGHDPNELDERGRSALFIACMHGHT
DAVKTLLEAGGNANLRTPEGISPLDAALGENHPEVMRDLIWAGSELEIPG
LAPRNNKTALVLAARAGHLEAVQMLLGAGADVSLADRRDWTAMHFAAWKG
H
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mRNA from alignment at H-elongata_contig51321:2686..3537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51321.12391.1 ID=mRNA_H-elongata_contig51321.12391.1|Name=mRNA_H-elongata_contig51321.12391.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=852bp|location=Sequence derived from alignment at H-elongata_contig51321:2686..3537- (Himanthalia elongata Himel1 dioecious)
ATGTCGCCACGTTGTGATTCCTTGCACCTCTTCGCAAGACGGGGCAAGCA CTATCGAATTGCCGCTTACCTGTCGAAGGGTCATGATCCTAACGAGCTGG ACGAGAGAGGTCGCAGCGCGTTGTTCATCGCATGCATGCACGGTCATACG GATGCGGTAAAAACCTTACTTGAAGCTGGAGGGAATGCCAACCTCCGCAC CCCGGAGGGAATTTCTCCGCTGGATGCAGCGCTGGGGGAAAACCACCCCG AAGTCATGAGGGACCTGATTTGGGCAGGTTCCGAGCTAGAGATTCCAGGT TTGTTCGCAAGATTTATCTATCTCTTAAAAGAGTAGCGATAGATGCCGGT GAGAGTTGAGGCTCAGAACCCCCCCGCAATGCCTCGGACTACATCAATAA TGTTCAACAATCCACCTCTTCGGCTTATTAATTTTATCCACATCTATTCT ACGGCAAAAACCTTTGATCCAAGCTTGGGCTTCGGCGATCCCGTGTGCGT TGGACCTAATTGCGGCTATGCTGTTGGTGTATATAACAGCAGTAGAAATG TTCGTGTGTCCTCTTTTATATGAGATATATATGTTTTAATCTGATGTACA GATCGGGGTGGCCTTCCACCACTGCTGCGAGCGTCCCAGAAAGGGATAAT AGCGGGGGTCAGGATACTCCTCGGCGCCCCGGCCATCAACGTAAACGCGA GGGCGCCCCGTAACAACAAGACGGCTCTCGTGCTGGCTGCGAGAGCCGGG CACCTGGAAGCGGTGCAGATGCTTCTCGGAGCCGGGGCCGACGTTTCCCT CGCGGACAGGAGAGACTGGACTGCCATGCACTTTGCGGCATGGAAGGGTC AC
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Coding sequence (CDS) from alignment at H-elongata_contig51321:2686..3537-

>mRNA_H-elongata_contig51321.12391.1 ID=mRNA_H-elongata_contig51321.12391.1|Name=mRNA_H-elongata_contig51321.12391.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig51321:2686..3537- (Himanthalia elongata Himel1 dioecious)
ATGTCGCCACGTTGTGATTCCTTGCACCTCTTCGCAAGACGGGGCAAGCA
CTATCGAATTGCCGCTTACCTGTCGAAGGGTCATGATCCTAACGAGCTGG
ACGAGAGAGGTCGCAGCGCGTTGTTCATCGCATGCATGCACGGTCATACG
GATGCGGTAAAAACCTTACTTGAAGCTGGAGGGAATGCCAACCTCCGCAC
CCCGGAGGGAATTTCTCCGCTGGATGCAGCGCTGGGGGAAAACCACCCCG
AAGTCATGAGGGACCTGATTTGGGCAGGTTCCGAGCTAGAGATTCCAGGT
TTATGTCGCCACGTTGTGATTCCTTGCACCTCTTCGCAAGACGGGGCAAG
CACTATCGAATTGCCGCTTACCTGTCGAAGGGTCATGATCCTAACGAGCT
GGACGAGAGAGGTCGCAGCGCGTTGTTCATCGCATGCATGCACGGTCATA
CGGATGCGGTAAAAACCTTACTTGAAGCTGGAGGGAATGCCAACCTCCGC
ACCCCGGAGGGAATTTCTCCGCTGGATGCAGCGCTGGGGGAAAACCACCC
CGAAGTCATGAGGGACCTGATTTGGGCAGGTTCCGAGCTAGAGATTCCAG
GTTTGGCGCCCCGTAACAACAAGACGGCTCTCGTGCTGGCTGCGAGAGCC
GGGCACCTGGAAGCGGTGCAGATGCTTCTCGGAGCCGGGGCCGACGTTTC
CCTCGCGGACAGGAGAGACTGGACTGCCATGCACTTTGCGGCATGGAAGG
GTCACGGCGCCCCGTAACAACAAGACGGCTCTCGTGCTGGCTGCGAGAGC
CGGGCACCTGGAAGCGGTGCAGATGCTTCTCGGAGCCGGGGCCGACGTTT
CCCTCGCGGACAGGAGAGACTGGACTGCCATGCACTTTGCGGCATGGAAG
GGTCAC
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