mRNA_H-elongata_contig5126.12384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5126.12384.1
Unique NamemRNA_H-elongata_contig5126.12384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: D7FV62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV62_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 7.300e-150
Identity = 244/306 (79.74%), Postives = 266/306 (86.93%), Query Frame = 1
Query:    1 QVAPHYLAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGGCSDCEVTRPSELWEYSDGAVYLVRELCMVNPERGVRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKRHLEVFLKPLFDTLSRMTSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQIMDSQVATDLPTAPHAGAVNMGMTKAPWAAMA 918
            +VAP YLA HV+RLL+ALLVCFFD+SWPVRDAACVASGRFAGAYPEECRPSL+KLY           XXXXXXXXXXXXXXXXXXXX A +KVSAWV E+LP+AK QG E+AE+HRRK NDAKAHTGNQV+SCGSLAPKL+KGGCSDC+VTRPSE WE+SDGAVYLVRELC  NPE GV FFEELADVARLTHFVQADCLRETIWKQLPAM EAVGK VFKRHL+VFLKPLFDTLSR+T+SQLA HAAASCVRQLS  +GPSIFRGRL+DSQR+IMD++V    P  P AG   MGMTKAPWA MA
Sbjct:  367 KVAPQYLATHVDRLLKALLVCFFDESWPVRDAACVASGRFAGAYPEECRPSLEKLYERWFRHVGDPIXXXXXXXXXXXXXXXXXXXXEAYDKVSAWVTENLPRAKQQGAESAEQHRRKHNDAKAHTGNQVFSCGSLAPKLRKGGCSDCQVTRPSEPWEFSDGAVYLVRELCFANPEVGVTFFEELADVARLTHFVQADCLRETIWKQLPAMGEAVGKNVFKRHLDVFLKPLFDTLSRITTSQLARHAAASCVRQLSKFIGPSIFRGRLTDSQREIMDAEVQLGGPPGPSAGL--MGMTKAPWATMA 670          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: A0A835YU79_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU79_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.630e-96
Identity = 164/304 (53.95%), Postives = 194/304 (63.82%), Query Frame = 1
Query:   19 LAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGGCSDCEVTRPSELWEYSDGAVYLVRELCMVNPERGVRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKRHLEVFLKPLFDTLSRMTSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQIMDSQ------VATDLPTAPHA-GAVNMGMTKAPWA 909
            +APHV  LL ALL+CF D+SWPVRDAACVASGRFA A+PEECR  L  L+                                A ++  AWVKE LPKA+ Q  +T EE +  QNDAKAHT  Q YSCGSLAPKLKKGGCSDCEVTR S  WEY+DGA+Y+ +ELC V PE       +LADVA LTHF QAD LRET++K LP MA  +GKK+F+ HLE  + PLFD L+R  + QLA HAA +CVR+LS  +GPSIFRGRLS  Q  IM++       V   LP  PH  GA +  +  APWA
Sbjct:  368 IAPHVPALLRALLICFKDESWPVRDAACVASGRFAAAFPEECREQLPLLFERWFKHLAEPIWSVREDSAAALGEVCAAYGREAIDRCLAWVKEMLPKAREQPAQTYEEMKAMQNDAKAHTDKQRYSCGSLAPKLKKGGCSDCEVTRASVPWEYADGAIYMAKELCAVAPEEAAALLPQLADVAALTHFPQADTLRETLFKALPEMARTLGKKLFRPHLEALIGPLFDALARPGTHQLAGHAAGACVRELSAFMGPSIFRGRLSPDQIHIMETSPYVIRGVERALPPVPHGMGAESPPIGMAPWA 671          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: A0A7S2V715_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V715_9STRA)

HSP 1 Score: 276 bits (705), Expect = 1.240e-87
Identity = 152/299 (50.84%), Postives = 184/299 (61.54%), Query Frame = 1
Query:   22 APHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRP-------------------------SLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGG---CSDCEVTRPSELWEYSDGAVYLVRELCMVNPERGVRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKRHLEVFLKPLFDTLSRMTSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQIMDS 834
            AP V+ LLEALLVCF+D+SWPVRDAACVASG FA AYP++CR                           L++LY                                   +V A++K+ L  A+ Q   T E+ +   ND  AHTGNQVYSCGSLAPKLK+GG   CSDC VTRP++ WE++DG +YLVRELC V P+  V FF  L +VARL HFV AD LRET++K LPAMA  +GKKVFKRHL+ FL+ LF+TLSR  ++QLA HAAA CV+ LS  VGP IFRGRLS   + IMDS
Sbjct:   70 APFVSDLLEALLVCFYDESWPVRDAACVASGTFAAAYPDQCRERRQPALEEEGGQQTGEVKAEAEVPTQLERLYERWFAHVSDPVWSVREDSAVALGQVCAAYGEEGLARVVAYLKDHLDDARSQPNLTPEQFKFSHNDHAAHTGNQVYSCGSLAPKLKRGGRKGCSDCTVTRPAQPWEFTDGCIYLVRELCAVAPDTAVEFFPGLVEVARLDHFVFADTLRETLFKSLPAMAHHLGKKVFKRHLDPFLEALFNTLSRAETAQLALHAAAHCVQDLSKFVGPGIFRGRLSPDMQDIMDS 368          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: A0A7S2YR83_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YR83_9STRA)

HSP 1 Score: 228 bits (582), Expect = 4.560e-69
Identity = 150/290 (51.72%), Postives = 190/290 (65.52%), Query Frame = 1
Query:   19 LAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKG-------GCSDCEVTRPSELWEYSDGAVYLVRELCM----------VNPERGVRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKR--HLEVFLKPLFDTLSRMTSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQIMD 831
            L   V+ L++ALL+CF D+SWPVRD AC+A G    AYPEECRP L  L+        XXXXXXXXXXXXXXXXXXXXXXXX  +K+   +KE +P AK Q   T  EH+ +QNDA AHT +Q++SCGSLAPKLKK        GCS C+VTR  +LWE +DGA+YLV E+            +  +    +  ELADV R+ HF QAD +R T+W+Q+P++A+ +GK+ FKR  +LE+F   LF  L   T+SQLA HAA  C  +L+ L+G  IFRGRL D QR I D
Sbjct:   48 LQSQVDVLMQALLMCFHDESWPVRDEACLACGIICRAYPEECRPELGTLWERWTEQLTXXXXXXXXXXXXXXXXXXXXXXXXFYQKLKDLLKELIPSAKKQAAMTMAEHKARQNDAAAHTDSQLFSCGSLAPKLKKRKDGAGRIGCSSCDVTRERQLWEATDGAIYLVSEVVKRCCHSDSVVPLTDDEIKEYLRELADVCRVQHFPQADDMRATLWRQVPSIAQELGKERFKRNGYLEIFTDLLFSNLESRTASQLAKHAAGQCAEELAQLIGVPIFRGRLEDYQRDIFD 337          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: B7GE47_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GE47_PHATC)

HSP 1 Score: 234 bits (596), Expect = 1.630e-67
Identity = 154/305 (50.49%), Postives = 195/305 (63.93%), Query Frame = 1
Query:   19 LAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGG-----CSDCEVTRPSELWEYSDGAVYLVRELCM--VNPERG--------VRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKR-HLEVFLKPLFDTLSRMTSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQIMDSQVA--TDLPTAPHAGAV 879
            L PH++ LL+ALL+CF D+SWPVRD AC+A G    AYPE CRP L KL+         XXXXXXXXXXXXXXXXXXXX     +++ A V + LP A+ Q   T  E++ +QNDA AHT +Q+YSCGSLAPKL+KGG     CS C+V R    WE +DG VYL+REL +   +PE          +    ELADV R+ HF Q+D LR T+W+ LP MAEA+GK+ FKR +L+VF   LF +L   +SSQL+ HAA  C  +L+ LVG +IFR RL D QR  +D  +     +P  P  GAV
Sbjct:  441 LLPHMDLLLQALLMCFHDESWPVRDEACLACGLLCKAYPESCRPELGKLWERWTGQLTDXXXXXXXXXXXXXXXXXXXXGADFLQELLALVDKLLPSARSQSAMTPTEYKARQNDAAAHTDSQLYSCGSLAPKLRKGGAGRIGCSSCDVNREKSPWEATDGCVYLIRELVVRCASPESPTPLADEILLPMLRELADVCRVQHFPQSDDLRTTLWRNLPGMAEALGKQRFKRLYLDVFQNLLFSSLDARSSSQLSQHAAGQCAEELADLVGRTIFRARLEDDQRDTLDRVLRERAAIPAGPADGAV 745          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: A0A7S1VTC2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VTC2_9STRA)

HSP 1 Score: 223 bits (569), Expect = 3.060e-67
Identity = 151/307 (49.19%), Postives = 195/307 (63.52%), Query Frame = 1
Query:    1 QVAPHYLAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGG-----CSDCEVTRPSELWEYSDGAVYLVRELCMVNPERG-----------VRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKR-HLEVFLKPLFDTLSRMTSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQIMDSQVA--TDLPTAP 864
            ++AP  LAP V  LL+ALL+CF D+SWPVRD AC+A G+F  AYP+ECRP L  L         XXXXXXXXXXXXXXXXXXXXXXX   +     ++  LP A+ Q   T E ++  QND + H+ +Q+YSCGSLAPKL+KGG     CS C +TRP   WE +DG +YL+RE+ + + E             +    ELADV R+ HF QAD LR T+W+QLP +A A+GK+ FKR +LE+FL  +   L   T+S L+ HAA  C  +L+TLVGP IFRGRL D QR+  D  +     +P+ P
Sbjct:   21 ELAPS-LAPFVPTLLQALLMCFHDESWPVRDEACLACGKFCRAYPDECRPELATLKERWMEQLTXXXXXXXXXXXXXXXXXXXXXXXILWDGCLKLLRSKLPSARSQEPMTREAYKAHQNDIEMHSNSQLYSCGSLAPKLRKGGAGRIGCSSCGITRPKAPWEATDGCIYLLREMVIKSVEEPSFSASMTDDILLPLMTELADVCRVKHFPQADDLRTTLWRQLPIIANALGKQRFKRLYLELFLDLMMKNLEESTASALSKHAAGQCAAELATLVGPGIFRGRLDDYQREAYDRAMRERASVPSGP 326          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: A0A1E7FDE2_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDE2_9STRA)

HSP 1 Score: 231 bits (590), Expect = 2.520e-66
Identity = 153/290 (52.76%), Postives = 196/290 (67.59%), Query Frame = 1
Query:   19 LAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKG------GCSDCEVTRPSELWEYSDGAVYLVRELC-------MVNP----ERGVRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKR-HLEVFLKPLFDTLSRMTSSQLASHAAASCVRQLSTLVGPSIFRGRL-SDSQRQIMD 831
            L PHV  LL+ALL+CF D+SWPVRD AC+A G F  AYPEECRP L+ L+         XXXXXXXXXXXXXXXXXXXXX    +++ A++KE+LP AK Q  +T EE +  QN+ +AHT NQ+YSCGSLAPKLKK       GC +CEV RP + WE +DG VYL+REL         V P    +  +   +E+AD+ R++HF Q+D LR T+W+QLP M  AVGK   KR +LEVFL  L   ++  T+S ++ HAAA+C  +LS LVGP+IFRGRL  D Q++ +D
Sbjct:  426 LQPHVTILLQALLMCFHDESWPVRDEACLACGIFCRAYPEECRPELETLWTRWTEQLTDXXXXXXXXXXXXXXXXXXXXXKEFFDRLMAFIKENLPAAKLQPKQTMEEFKALQNNMEAHTENQLYSCGSLAPKLKKKAGAGRIGCGNCEVNRPKQPWEATDGCVYLIRELIETCNEPDSVQPPFTDDTLLPLLQEVADICRVSHFPQSDELRTTLWRQLPGMMMAVGKVRCKRLYLEVFLDLLMRNVASRTASAISQHAAAACAHELSDLVGPTIFRGRLYDDHQKEALD 715          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: B8BVW3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVW3_THAPS)

HSP 1 Score: 231 bits (589), Expect = 6.860e-66
Identity = 154/301 (51.16%), Postives = 199/301 (66.11%), Query Frame = 1
Query:   16 YLAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGG-----CSDCEVTRPSELWEYSDGAVYLVRELCMVNPERG--------------VRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFK-RHLEVFLKPLFDTLSRMTS--SQLASHAAASCVRQLSTLVGPSIFRGRLS-----DSQRQIMDSQ 837
            YL+P+V  LL+ALL+CF D+SWPVRD AC+A G F  AYPEEC P L+ L+        XXXXXXXXXXXXXXXXXXXXXX    EKV   V++ LP AK Q   + EE+++ QND  AHTGNQVYSCGSLAPKL+KGG     CS C V RP   WE +DG VYL+RELC+  P++               +    ELADV RL+H+ Q+D LR T+W+QLP+MA+A+GKK FK ++L++F++ L   +    S  SQL+ HAA  C  +L+ L+G  IFRGRL+     D+  ++MD +
Sbjct:  558 YLSPYVTMLLQALLMCFHDESWPVRDEACLACGTFCIAYPEECTPELNTLFERWTEQLTXXXXXXXXXXXXXXXXXXXXXXQDMFEKVLGVVRKQLPAAKDQPAMSREEYKKLQNDVSAHTGNQVYSCGSLAPKLRKGGAGRIGCSSCLVDRPKAPWEATDGCVYLIRELCVRFPDKEDTEREDVVLGDDILLPIMTELADVCRLSHYPQSDDLRTTLWRQLPSMAQAMGKKRFKGKYLDLFVELLAKNIDDRYSVASQLSIHAAGQCAEELANLIGYGIFRGRLAAVGGEDAFDRVMDDR 858          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: A0A7S2UBJ5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBJ5_9STRA)

HSP 1 Score: 227 bits (578), Expect = 9.200e-66
Identity = 146/280 (52.14%), Postives = 186/280 (66.43%), Query Frame = 1
Query:   13 HYLAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGG-----CSDCEVTRPSELWEYSDGAVYLVREL---CMVNPERGVRFFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKR-HLEVFLKPLFDTLS-RMTSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQ 822
            HYLAP V  LL+ALL+CF D+SWPVRD AC+A G F  AYPEECRP L  L+        XXXXXXXXXXXXXXXXXXXX      E++   ++  LP AK Q   T EE+++ QND  +H+ +Q+YSCGSLAPKL+KGG     CSDC +TRP   WE +DG +YL+RE+   C +     +    ELAD+ R+ HF QAD LR T+WK L  MA A+GK+ FKR +L++FL  L   L  R  +SQL+ HAA  C  +LS+ VG +IFRGRL ++ +Q
Sbjct:  321 HYLAPFVPMLLQALLMCFHDESWPVRDEACLACGTFCKAYPEECRPELPTLFSRWTEHLTXXXXXXXXXXXXXXXXXXXXYGPPMVEQILDVLRTQLPSAKDQPPMTREEYKQNQNDIDSHSNSQLYSCGSLAPKLRKGGAGRIGCSDCAITRPKAPWEATDGCIYLLREVIEKCTITDAILLPLLTELADICRVRHFPQADDLRTTLWKNLVVMARALGKQRFKRIYLDLFLDLLMQNLDDRGGASQLSIHAAGQCAEELSSFVGINIFRGRLEEAWQQ 600          
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Match: A0A7S4RNT9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNT9_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.990e-64
Identity = 150/298 (50.34%), Postives = 181/298 (60.74%), Query Frame = 1
Query:   19 LAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRPSLDKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEKVSAWVKESLPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGG-----CSDCEVTRPSELWEYSDGAVYLVRELCM----VNPERGVR-----------------FFEELADVARLTHFVQADCLRETIWKQLPAMAEAVGKKVFKR-HLEVFLKPLFDTLSRM---TSSQLASHAAASCVRQLSTLVGPSIFRGRLSDSQRQ 822
            LAP V  LL+AL++CF D+SWPVRD AC+A G F  AYPEEC P L  L+        XXXXXXXXXXXXXXXXXXXX      +KV   V E LP AK Q   + EE++R+QND + HT NQ+YSCGSLAPKL+KGG     C++C + RP   WE SDG VYL+RELC+      P   V                     ELAD  R+ HF Q D LR T+WK LP MA A+GKK FKR +L +FL  L   L      + SQL+ HAA  C+ +L+ LVG SIFRGRL +  +Q
Sbjct:   70 LAPFVPMLLQALIMCFHDESWPVRDEACLACGTFCKAYPEECVPELATLFERWTEQLTXXXXXXXXXXXXXXXXXXXXYGLDMLQKVLKVVNEKLPGAKDQPTMSREEYKRQQNDIENHTNNQLYSCGSLAPKLRKGGAGRIGCTNCLINRPKAPWEASDGCVYLLRELCLRATPTPPSSSVDQHSASIAASLADDTLLPLLTELADTCRVKHFPQGDDLRTTLWKNLPVMANALGKKRFKRTYLHLFLDLLMSNLDDRYGSSQSQLSVHAAGQCMEELANLVGKSIFRGRLEEMWQQ 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5126.12384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV62_ECTSI7.300e-15079.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YU79_9STRA1.630e-9653.95Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S2V715_9STRA1.240e-8750.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2YR83_9STRA4.560e-6951.72Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B7GE47_PHATC1.630e-6750.49Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1VTC2_9STRA3.060e-6749.19Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FDE2_9STRA2.520e-6652.76ARM repeat-containing protein n=1 Tax=Fragilariops... [more]
B8BVW3_THAPS6.860e-6651.16Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2UBJ5_9STRA9.200e-6652.14Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4RNT9_9STRA3.990e-6450.34Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5126contigH-elongata_contig5126:9079..11670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue4.3e-124
Seed eggNOG ortholog2880.D7FV62
EggNOG OGs28JXF@1,2QSBS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size921
Cds size921
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5126.12384.1prot_H-elongata_contig5126.12384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5126 9079..11670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.2388964-CDS-H-elongata_contig5126:9078..91771622930839.2388964-CDS-H-elongata_contig5126:9078..9177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 9079..9177 -
1691679592.2496507-CDS-H-elongata_contig5126:9078..91771691679592.2496507-CDS-H-elongata_contig5126:9078..9177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 9079..9177 -
1622930839.2528522-CDS-H-elongata_contig5126:9515..97161622930839.2528522-CDS-H-elongata_contig5126:9515..9716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 9516..9716 -
1691679592.2620075-CDS-H-elongata_contig5126:9515..97161691679592.2620075-CDS-H-elongata_contig5126:9515..9716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 9516..9716 -
1622930839.2646818-CDS-H-elongata_contig5126:10077..102511622930839.2646818-CDS-H-elongata_contig5126:10077..10251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 10078..10251 -
1691679592.2728999-CDS-H-elongata_contig5126:10077..102511691679592.2728999-CDS-H-elongata_contig5126:10077..10251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 10078..10251 -
1622930839.2799928-CDS-H-elongata_contig5126:10459..106311622930839.2799928-CDS-H-elongata_contig5126:10459..10631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 10460..10631 -
1691679592.280678-CDS-H-elongata_contig5126:10459..106311691679592.280678-CDS-H-elongata_contig5126:10459..10631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 10460..10631 -
1622930839.2987432-CDS-H-elongata_contig5126:11110..112121622930839.2987432-CDS-H-elongata_contig5126:11110..11212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 11111..11212 -
1691679592.2884593-CDS-H-elongata_contig5126:11110..112121691679592.2884593-CDS-H-elongata_contig5126:11110..11212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 11111..11212 -
1622930839.3172777-CDS-H-elongata_contig5126:11497..116701622930839.3172777-CDS-H-elongata_contig5126:11497..11670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 11498..11670 -
1691679592.2964425-CDS-H-elongata_contig5126:11497..116701691679592.2964425-CDS-H-elongata_contig5126:11497..11670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 11498..11670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5126.12384.1

>prot_H-elongata_contig5126.12384.1 ID=prot_H-elongata_contig5126.12384.1|Name=mRNA_H-elongata_contig5126.12384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=307bp
QVAPHYLAPHVNRLLEALLVCFFDQSWPVRDAACVASGRFAGAYPEECRP
SLDKLYERWFHHVSDPIWSVRDDSATALGAVCSAYGEEAQEKVSAWVKES
LPKAKHQGVETAEEHRRKQNDAKAHTGNQVYSCGSLAPKLKKGGCSDCEV
TRPSELWEYSDGAVYLVRELCMVNPERGVRFFEELADVARLTHFVQADCL
RETIWKQLPAMAEAVGKKVFKRHLEVFLKPLFDTLSRMTSSQLASHAAAS
CVRQLSTLVGPSIFRGRLSDSQRQIMDSQVATDLPTAPHAGAVNMGMTKA
PWAAMA*
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mRNA from alignment at H-elongata_contig5126:9079..11670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5126.12384.1 ID=mRNA_H-elongata_contig5126.12384.1|Name=mRNA_H-elongata_contig5126.12384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2592bp|location=Sequence derived from alignment at H-elongata_contig5126:9079..11670- (Himanthalia elongata Himel1 dioecious)
CAGGTTGCCCCGCACTACCTGGCCCCTCATGTAAACCGCCTGCTCGAGGC CCTCTTGGTGTGCTTCTTCGACCAGAGCTGGCCGGTCAGAGATGCAGCCT GCGTGGCCAGTGGTCGCTTCGCGGGAGCGTATCCTGAGGAGTGCCGCCCC AGCCTTGACAAGCTCTACGAAAGGTGATAGGTCGTTGTTCGGCGGGGGTT GGAGAGGGGGTGAGCAATCCAATGTACAGCTCTTTGTGGCTGCATCTCTG ACGGTTCCACTTTTTGGTGTCCCTTAGAGGCGTTATTTCTAAACCAACCG CGTCGACGTGCTCTCTTACAAATAAATACAACACTGTTTCATCACCATTC CGATGCGGCCTCCCTTCCCTTGCGGATGACATCATGGCAAAGATGTGATA ATACCGTGGAGCTATCGTCTCTAAGTTAACCCCTCGGTGATTAAATCGAG CGTGGCAGGTGGTTCCACCATGTAAGCGACCCGATCTGGTCGGTGAGGGA TGACAGCGCCACCGCTCTGGGGGCGGTGTGCAGCGCTTACGGCGAGGAAG CGCAGGAAAAGTGAGAATACGTATGTCTCTCCGCAGAGAATCAGTAGGGC CGGAGGGATTAAAGTGTACTCCAGTTTTGCATGCCTGAGCTGTTAGATGA TTACTAAAGACTATTGACCACGATTACCGTTACCGTTAGTCCTCGGGAAG AAGGGAAGACGTAGAGAGCATTGTTCCTACATGATAATGATGAATCGATC GATGATCGCCAATGGCACGGCACCGGGATGGGGGGAAGTCTTTTTTCCTC AAGGTATAAGCTTCAAAAATATGCTAATGCTTATCAGACCTGAAACATTT GTGACACTGTACTCTCCTGGTAATTGCTAAGGGCGAGAGCTGTGACTCGA CGTACGGCTGTGTACTTTCCTTGCAAAACAGCGCGTGCAAAGCCAAGCCA ATCCTCCGCTTTATTTGATAGTTGAATGTTTCTCGTCGCCTTTGATCGGT CCTCTGTATCCCCTGTCCCCGGGTGTTGCCGATCAAAAGGGTATCCGCTT GGGTGAAGGAAAGCCTCCCGAAGGCGAAACATCAGGGAGTGGAGACGGCA GAGGAGCACAGGCGCAAGCAAAACGACGCTAAGGCGCACACCGGAAACCA GGTGTACTCGTGCGGGTCGCTAGCGCCCAAGCTCAAGAAGGGCGGCTGCT CTGACTGCGAGGTGAAACGTGGCCGACGCGTTAGACCAGGGAATGTACCC TCAGGGAGAGGGCAACTGCTACCGCTGCGAATACGTGGGGGAGGGACGCA GGTCGCATTTTTTGGGTCCAGTCCTTCACGATAGATTTTCTGTTTTATAG CGTGATTTGCTCCGTTTTATTGTAGGTTCGTTAGAGAGAGAGAGAAAACC GTTCTTACCGGGTTACCAGGTGACTCGGCCGAGCGAGCTCTGGGAGTACA GCGATGGAGCAGTTTACCTTGTGCGAGAGCTGTGCATGGTCAACCCGGAG CGGGGCGTCCGGTTCTTTGAGGAGCTCGCTGACGTGGCGAGGCTGACACA CTTCGTCCAGGCAGATTGTCTTCGAGAGACGATCTGGAAGCAGGTGAATG GGGAGGGAAGAGGAGGAGAGATACATCAAATAGATGGATAGATTGATGAA TAGATATTATGTCGGTAGCTCGAAACGTCACGCCCTTTGCCATAGGCACT CTTCATAGAATTCATACCGCCGAGGTGCATCGATGGAGCCTTTGTCCGGT GCCGTTGATGGTCGTGGCACAGTAGTGGACTGACTCCTTCTAGTACGTAA CAACTGACAAGAGCTCTACGCTAATTAATAGTGCTCTGTAGTGGTAAACG CTCTGTAGGAAAGCCCACCGCCTTTTTCATCCGGGTCGTTTGATATCACT CACTCACTTTGTTTACAATCCTATTTCTTTGTTGGGCATCGTTACTTTGG TCAGTTGCCGGCGATGGCGGAGGCTGTGGGCAAGAAGGTTTTCAAGCGAC ATCTGGAGGTGTTTCTTAAGCCTCTGTTCGACACGCTGTCTCGCATGACT AGCAGCCAGCTCGCCAGTCACGCCGCGGCATCATGCGTGCGACAGCTGAG CACGCTGGTTGGCCCGTCTATCTTCAGGGGTCGCCTCAGCGACTCCCAGC GGCAGGTGAGCGGAAGTAGTAAATGCCTTCCGGGGTTTTCCGCTCCGACG ATGCCATGCTTTCTCTTCATCCTATTTTTTTCTCACGCGGCCTGACTTTT TAGCTCCACCGTGGGTTCCTTTGTTTCGAGTCTTCCCTGCCTAAACTGTT TGGGGTTTGAGCGAAATCAATCAAGCGTTGCGACGGCGCGTATTGCCGAG GTATTTTTTTAATAAATGAGGATCATGGCCAGCCTACGCGGAAAGTGTCG CTGGTCGTTAGGTTGAGCTCGGTGTCGGTTGAGGCTCGACTCCATGCCGT ATGCCGTATTTTTGTTCTCCTCTGTTCTGTTCCTATGGACCAGATTATGG ATTCCCAAGTAGCAACGGATTTGCCGACCGCCCCGCATGCTGGAGCCGTT AACATGGGTATGACGAAGGCGCCATGGGCAGCTATGGCATAG
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Coding sequence (CDS) from alignment at H-elongata_contig5126:9079..11670-

>mRNA_H-elongata_contig5126.12384.1 ID=mRNA_H-elongata_contig5126.12384.1|Name=mRNA_H-elongata_contig5126.12384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1842bp|location=Sequence derived from alignment at H-elongata_contig5126:9079..11670- (Himanthalia elongata Himel1 dioecious)
CAGGTTGCCCCGCACTACCTGGCCCCTCATGTAAACCGCCTGCTCGAGGC
CCTCTTGGTGTGCTTCTTCGACCAGAGCTGGCCGGTCAGAGATGCAGCCT
GCGTGGCCAGTGGTCGCTTCGCGGGAGCGTATCCTGAGGAGTGCCGCCCC
AGCCTTGACAAGCTCTACGAAAGCAGGTTGCCCCGCACTACCTGGCCCCT
CATGTAAACCGCCTGCTCGAGGCCCTCTTGGTGTGCTTCTTCGACCAGAG
CTGGCCGGTCAGAGATGCAGCCTGCGTGGCCAGTGGTCGCTTCGCGGGAG
CGTATCCTGAGGAGTGCCGCCCCAGCCTTGACAAGCTCTACGAAAGGTGG
TTCCACCATGTAAGCGACCCGATCTGGTCGGTGAGGGATGACAGCGCCAC
CGCTCTGGGGGCGGTGTGCAGCGCTTACGGCGAGGAAGCGCAGGAAAAGT
GGTTCCACCATGTAAGCGACCCGATCTGGTCGGTGAGGGATGACAGCGCC
ACCGCTCTGGGGGCGGTGTGCAGCGCTTACGGCGAGGAAGCGCAGGAAAA
GGTATCCGCTTGGGTGAAGGAAAGCCTCCCGAAGGCGAAACATCAGGGAG
TGGAGACGGCAGAGGAGCACAGGCGCAAGCAAAACGACGCTAAGGCGCAC
ACCGGAAACCAGGTGTACTCGTGCGGGTCGCTAGCGCCCAAGCTCAAGAA
GGGCGGCTGCTCTGACTGCGAGGGTATCCGCTTGGGTGAAGGAAAGCCTC
CCGAAGGCGAAACATCAGGGAGTGGAGACGGCAGAGGAGCACAGGCGCAA
GCAAAACGACGCTAAGGCGCACACCGGAAACCAGGTGTACTCGTGCGGGT
CGCTAGCGCCCAAGCTCAAGAAGGGCGGCTGCTCTGACTGCGAGGTGACT
CGGCCGAGCGAGCTCTGGGAGTACAGCGATGGAGCAGTTTACCTTGTGCG
AGAGCTGTGCATGGTCAACCCGGAGCGGGGCGTCCGGTTCTTTGAGGAGC
TCGCTGACGTGGCGAGGCTGACACACTTCGTCCAGGCAGATTGTCTTCGA
GAGACGATCTGGAAGCAGGTGACTCGGCCGAGCGAGCTCTGGGAGTACAG
CGATGGAGCAGTTTACCTTGTGCGAGAGCTGTGCATGGTCAACCCGGAGC
GGGGCGTCCGGTTCTTTGAGGAGCTCGCTGACGTGGCGAGGCTGACACAC
TTCGTCCAGGCAGATTGTCTTCGAGAGACGATCTGGAAGCAGTTGCCGGC
GATGGCGGAGGCTGTGGGCAAGAAGGTTTTCAAGCGACATCTGGAGGTGT
TTCTTAAGCCTCTGTTCGACACGCTGTCTCGCATGACTAGCAGCCAGCTC
GCCAGTCACGCCGCGGCATCATGCGTGCGACAGCTGAGCACGCTGGTTGG
CCCGTCTATCTTCAGGGGTCGCCTCAGCGACTCCCAGCGGCAGTTGCCGG
CGATGGCGGAGGCTGTGGGCAAGAAGGTTTTCAAGCGACATCTGGAGGTG
TTTCTTAAGCCTCTGTTCGACACGCTGTCTCGCATGACTAGCAGCCAGCT
CGCCAGTCACGCCGCGGCATCATGCGTGCGACAGCTGAGCACGCTGGTTG
GCCCGTCTATCTTCAGGGGTCGCCTCAGCGACTCCCAGCGGCAGATTATG
GATTCCCAAGTAGCAACGGATTTGCCGACCGCCCCGCATGCTGGAGCCGT
TAACATGGGTATGACGAAGGCGCCATGGGCAGCTATGGCATAGATTATGG
ATTCCCAAGTAGCAACGGATTTGCCGACCGCCCCGCATGCTGGAGCCGTT
AACATGGGTATGACGAAGGCGCCATGGGCAGCTATGGCATAG
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