mRNA_H-elongata_contig51210.12380.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51210.12380.1
Unique NamemRNA_H-elongata_contig51210.12380.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51210.12380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51210contigH-elongata_contig51210:236..1292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.5946786-CDS-H-elongata_contig51210:237..3751622930838.5946786-CDS-H-elongata_contig51210:237..375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51210 238..375 -
1691679592.0273697-CDS-H-elongata_contig51210:237..3751691679592.0273697-CDS-H-elongata_contig51210:237..375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51210 238..375 -
1622930838.6087062-CDS-H-elongata_contig51210:1112..12921622930838.6087062-CDS-H-elongata_contig51210:1112..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51210 1113..1292 -
1691679592.0375605-CDS-H-elongata_contig51210:1112..12921691679592.0375605-CDS-H-elongata_contig51210:1112..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51210 1113..1292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51210.12380.1prot_H-elongata_contig51210.12380.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51210 238..1292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51210.12380.1

>prot_H-elongata_contig51210.12380.1 ID=prot_H-elongata_contig51210.12380.1|Name=mRNA_H-elongata_contig51210.12380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
ENEEDAAKEDGQKGKGEKGDKKVSERRAKSTEKTGGRKGRPSKTMGWESA
GGGGGSSASMELVDDEKLFVEEAQEGAVPDVARPARPVPVHRMQVPPEAV
GDLLMV
back to top

mRNA from alignment at H-elongata_contig51210:236..1292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51210.12380.1 ID=mRNA_H-elongata_contig51210.12380.1|Name=mRNA_H-elongata_contig51210.12380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-elongata_contig51210:236..1292- (Himanthalia elongata Himel1 dioecious)
GAAAATGAGGAAGATGCGGCCAAGGAAGATGGACAAAAGGGGAAAGGAGA
GAAGGGAGACAAGAAAGTGTCCGAGCGGAGGGCCAAATCAACGGAGAAGA
CGGGCGGGAGGAAAGGACGGCCGTCGAAAACGATGGGCTGGGAATCCGCG
GGTGGCGGTGGCGGGAGCTCCGCTAGTATGGTGAGCAACGAGGACTGGGA
TCAGAATTTTCAACCATCGCTGCTGCTTGACTCGTCAAATATATTAAATC
CTCAGCGAGATTGCGTCGTTGTCTTTTCTCCGGGATTGATTGCTATATGA
CCGTATGAAAAATAGTACGTAGTGTGACTTTTTGAGCTGTCGCGCAAATT
TCCCTAGTGACGTGACATGACATGACATGACATGACAGCGTGTATGACAG
CGGTGATATAATAGTCATCCTGCGATGTTAGGGGGTGTATTGTCTATTAA
TAGTCAGCTTGCAAATGATCCTATGCCGAACGAAATTTGGGGACAAGACC
ACTCGCGAACTCCTTCTTCTTTCCCCCAGCTACATATCTCTCTCTCTAAT
ACTAGAAAACCAGCATACCTTTGGGGCCCATGATGCGAAGAGACGAGACT
GTCGTGAGCATCGCCTCCTCGCGGCGGGATTCCCGTTGGAAATAAAACCG
CAAAAATTGGGCCCTGTGGCAACGCACAAGGACCCAGTCGCAGAACAGGC
AGCGACAAAACCTTCCCAATCAAACGCTAGGCTTACTATCTTGTCGTACG
TGGAATAGGGCGCGTAGTAGGCACATGAAACACAAATCGGGGTTGTACTC
TGCGCTGCCCTTTGCGACGTTCCGGCGGCTCTGTGTATCGCGTCTGCTGG
GGGGGTTTCTTTTAAAATATATGAACTCTTAATATATCGTATGTTCGTGT
GTCTTGCTCCTACCAAGGAGCTCGTGGACGACGAGAAACTGTTTGTGGAG
GAGGCGCAGGAGGGAGCCGTGCCAGACGTAGCACGCCCGGCGAGACCCGT
CCCCGTCCACCGCATGCAAGTCCCGCCCGAGGCAGTGGGAGACCTGTTGA
TGGTGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51210:236..1292-

>mRNA_H-elongata_contig51210.12380.1 ID=mRNA_H-elongata_contig51210.12380.1|Name=mRNA_H-elongata_contig51210.12380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig51210:236..1292- (Himanthalia elongata Himel1 dioecious)
GAAAATGAGGAAGATGCGGCCAAGGAAGATGGACAAAAGGGGAAAGGAGA
GAAGGGAGACAAGAAAGTGTCCGAGCGGAGGGCCAAATCAACGGAGAAGA
CGGGCGGGAGGAAAGGACGGCCGTCGAAAACGATGGGCTGGGAATCCGCG
GGTGGCGGTGGCGGGAGCTCCGCTAGTATGGAAAATGAGGAAGATGCGGC
CAAGGAAGATGGACAAAAGGGGAAAGGAGAGAAGGGAGACAAGAAAGTGT
CCGAGCGGAGGGCCAAATCAACGGAGAAGACGGGCGGGAGGAAAGGACGG
CCGTCGAAAACGATGGGCTGGGAATCCGCGGGTGGCGGTGGCGGGAGCTC
CGCTAGTATGGAGCTCGTGGACGACGAGAAACTGTTTGTGGAGGAGGCGC
AGGAGGGAGCCGTGCCAGACGTAGCACGCCCGGCGAGACCCGTCCCCGTC
CACCGCATGCAAGTCCCGCCCGAGGCAGTGGGAGACCTGTTGATGGTGGA
GCTCGTGGACGACGAGAAACTGTTTGTGGAGGAGGCGCAGGAGGGAGCCG
TGCCAGACGTAGCACGCCCGGCGAGACCCGTCCCCGTCCACCGCATGCAA
GTCCCGCCCGAGGCAGTGGGAGACCTGTTGATGGTG
back to top