mRNA_H-elongata_contig51191.12377.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51191.12377.1
Unique NamemRNA_H-elongata_contig51191.12377.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: D8LDX8_ECTSI (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 8.620e-23
Identity = 50/68 (73.53%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 MKAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITE 204
            +KAK IQNKP+ NQKLSKTHLL+EYAGE+E+LRSMLQASR+KNG+Y+EP RF++MEN ++SQ NQI E
Sbjct:  331 LKAKSIQNKPVANQKLSKTHLLKEYAGEVESLRSMLQASRDKNGVYIEPWRFDQMENTLASQGNQIAE 398          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: A0A836CEW9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.400e-18
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 MKAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITEVEVILAKKNNEAKELK 252
            +KAK I+N+P  NQKL+K H+L+EYA E+E+LRSMLQA+REKNG+Y++P  +E++E+   SQ N I E E ++  K  EAK LK
Sbjct:  295 LKAKSIENRPTANQKLTKKHMLKEYASEIESLRSMLQAAREKNGVYLDPAYYEQIESARESQKNLIVEQEGVIRSKTEEAKALK 378          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: A0A812SSK3_SYMMI (Kinesin-like protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SSK3_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 4.370e-13
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITEVEVILAKKNNEAKELK 252
            +AK I+N P VNQ+++K  +L+EY  E+E+L+ MLQ +REKNG+YV+P  FE+ME  +SSQ   I E E  L  +  E K LK
Sbjct:  272 RAKSIKNAPQVNQRMTKKVVLKEYCAEIESLKQMLQITREKNGVYVDPLVFEQMEARLSSQEGLIAECESALRVRTEEVKTLK 354          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: A0A8K1FAV9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAV9_PYTOL)

HSP 1 Score: 72.0 bits (175), Expect = 8.780e-13
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITEVEVILAKKNNEAKEL 249
            +AK I+NKP +NQKL+K  LL+EY  E+E LRS LQA+R K+GIY+ P +F EM+  ++ Q+ QITE+E  L  ++   K+L
Sbjct:  325 RAKSIKNKPEMNQKLTKNVLLKEYGSEIEALRSALQAARAKDGIYLPPSQFNEMQERLAGQAAQITELEDELEVRSRTCKDL 406          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: A0A226ERM7_FOLCA (Kinesin-like protein n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226ERM7_FOLCA)

HSP 1 Score: 70.1 bits (170), Expect = 4.140e-12
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITE 204
            +AK IQN+P VNQKL+K  +LREY  E+E LR  LQASREKNGIYV+   +++M + I SQ+  +TE
Sbjct:  364 RAKNIQNRPEVNQKLTKKAMLREYTEEIERLRKDLQASREKNGIYVDKENYDKMMSQIESQNQDLTE 430          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: A0A4Q3BPG2_9BACT (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BPG2_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 1.280e-11
Identity = 36/83 (43.37%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITEVEVILAKKNNEAKELK 252
            +A+ I+N+P VNQK++K  +++EY  E+ETLR+ LQ +REKNG+Y++P  F +ME+ + +Q +Q+ E E  L  + +E K L+
Sbjct:  112 RARNIKNQPTVNQKMTKKVIMKEYFVEIETLRAQLQLTREKNGVYLDPAEFYQMESKMQAQESQLRECEGALKLRTDECKVLR 194          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: A0A024GEV0_9STRA (Kinesin motor domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GEV0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.710e-11
Identity = 36/82 (43.90%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITEVEVILAKKNNEAKEL 249
            +A+ I+NKP VNQK++K  LL+EY  E+E+LR+ L+A+R+K+GIY+ P +++EM+  ++ Q+ Q+ E+E  L  ++   KEL
Sbjct:  332 RARSIRNKPEVNQKMTKHALLKEYGSEIESLRNALEAARQKDGIYLPPAQYDEMQQRLAGQAAQVLELEDQLDVRSKTCKEL 413          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: A0A6G1SR69_9ACAR (Kinesin-like protein n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SR69_9ACAR)

HSP 1 Score: 66.2 bits (160), Expect = 9.300e-11
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITEVE 210
            +AK+I NKP +NQ+L+K  LLREYA E+E LR  LQA+REKNGIY+E   ++EM   +S  +N I E E
Sbjct:  336 RAKKITNKPEMNQRLTKKALLREYAQEIERLRRDLQATREKNGIYIEEENYKEMCKQLSMGNNAIQEKE 404          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: F0W4U7_9STRA (Kinesinlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4U7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.470e-11
Identity = 32/69 (46.38%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQSNQITEVE 210
            +A+ I+NKP VNQK++K  LL+EY  E+E+LR+ L+A+R+K+GIY+ P +++EM+  ++ Q+ Q+ E+E
Sbjct:  385 RARSIRNKPEVNQKMTKHALLKEYGSEIESLRNALEAARQKDGIYLPPAQYDEMQQRLAGQAAQVLELE 453          
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Match: K3WG29_GLOUD (Kinesin motor domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG29_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 3.290e-10
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    4 KAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPRRFEEMENMISSQS 189
            +AK I+NKP VNQK +K  LL+EY  E+ETLR+ LQA+R K+GIY+ P +F EM+  I+ Q+
Sbjct:  344 RAKNIKNKPEVNQKTTKAGLLKEYGNEIETLRNALQAARTKDGIYLPPAQFAEMQERIAGQA 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51191.12377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX8_ECTSI8.620e-2373.53Kinesin motor domain-containing protein (Fragment)... [more]
A0A836CEW9_9STRA3.400e-1854.76P-loop containing nucleoside triphosphate hydrolas... [more]
A0A812SSK3_SYMMI4.370e-1349.40Kinesin-like protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A8K1FAV9_PYTOL8.780e-1350.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A226ERM7_FOLCA4.140e-1256.72Kinesin-like protein n=2 Tax=Folsomia candida TaxI... [more]
A0A4Q3BPG2_9BACT1.280e-1143.37Kinesin motor domain-containing protein (Fragment)... [more]
A0A024GEV0_9STRA2.710e-1143.90Kinesin motor domain-containing protein n=2 Tax=Al... [more]
A0A6G1SR69_9ACAR9.300e-1155.07Kinesin-like protein n=1 Tax=Aceria tosichella Tax... [more]
F0W4U7_9STRA9.470e-1146.38Kinesinlike protein putative n=1 Tax=Albugo laibac... [more]
K3WG29_GLOUD3.290e-1054.84Kinesin motor domain-containing protein n=1 Tax=Gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51191contigH-elongata_contig51191:385..1412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue6.2e-20
Seed eggNOG ortholog2880.D8LDX8
KEGG koko:K10398,ko:K14400
KEGG Pathwayko03015,map03015
GOsGO:0000226,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005819,GO:0005856,GO:0005871,GO:0005874,GO:0005875,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0008574,GO:0009653,GO:0009826,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030865,GO:0031122,GO:0032502,GO:0032506,GO:0032989,GO:0032991,GO:0040007,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043622,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0051301,GO:0060560,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902410,GO:1902850,GO:1903047,GO:1990939
EggNOG free text desc.ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsCOG5059@1,KOG0243@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51191.12377.1prot_H-elongata_contig51191.12377.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51191 385..1412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.2923536-CDS-H-elongata_contig51191:384..4681622930838.2923536-CDS-H-elongata_contig51191:384..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51191 385..468 +
1691679591.9141757-CDS-H-elongata_contig51191:384..4681691679591.9141757-CDS-H-elongata_contig51191:384..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51191 385..468 +
1622930838.3152616-CDS-H-elongata_contig51191:711..8221622930838.3152616-CDS-H-elongata_contig51191:711..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51191 712..822 +
1691679591.9278364-CDS-H-elongata_contig51191:711..8221691679591.9278364-CDS-H-elongata_contig51191:711..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51191 712..822 +
1622930838.3485394-CDS-H-elongata_contig51191:1346..14121622930838.3485394-CDS-H-elongata_contig51191:1346..1412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51191 1347..1412 +
1691679591.9357264-CDS-H-elongata_contig51191:1346..14121691679591.9357264-CDS-H-elongata_contig51191:1346..1412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51191 1347..1412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51191.12377.1

>prot_H-elongata_contig51191.12377.1 ID=prot_H-elongata_contig51191.12377.1|Name=mRNA_H-elongata_contig51191.12377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MKAKRIQNKPMVNQKLSKTHLLREYAGEMETLRSMLQASREKNGIYVEPR
RFEEMENMISSQSNQITEVEVILAKKNNEAKELKVN*
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mRNA from alignment at H-elongata_contig51191:385..1412+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51191.12377.1 ID=mRNA_H-elongata_contig51191.12377.1|Name=mRNA_H-elongata_contig51191.12377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-elongata_contig51191:385..1412+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGAAGAGAATCCAGAACAAACCGATGGTCAACCAGAAGTTGAG CAAGACCCACCTACTCCGAGAGTATGCGGGAGAGGTGCGATATTACATAC AGTTTCGAGATGTACGCAACAAATGCGGTGTGATAATCCGGTCGATGTGA GAAGCACTCGGGGGGGAGTTCCTACATCTACCCCCCCCCCCCCCTGCCCT ACCGTCATCTCATCCCCAGAACGCGTGGTCAATGGTCTACCAGGTAACAG CTAATGCAGGCAAAACTCAAGTACCCGTCTCCCCCGTCCTCCCCGCCCCC CCCCGTCCCATTAAATCTTCCACTCAGATGGAGACCCTGCGATCGATGCT TCAGGCGTCTCGCGAGAAAAACGGGATATACGTGGAGCCCCGGCGATTCG AGGAGATGGAGAACATGATTAGTTCTCAGAGTAATCAGGCAAGAGTCGTC ATCGACGGTAACGCACGCATCCACCCGCTCCGTCCCCTCCCGTCCCCTCT CCTACGCCTTTGTCTCGCCTCGAGTCTCGCCGCCGCGATGCCGCACATTA ATTCGCAATAAGCCTTTCGGCACGGCACTTGAAAGAGTGAGGCTGAAAGC GAAAGAGGAAGCTTCGATGGAAGATAGGGAGTTATACAGTATTACAGTGC TTAGAAGGAAAGAAGGAAGAGGAAGGAGACGGGGACCGCGAATATCTCAT CCCCGCTTTTTGTGTTTTTGTTCGCACAACAGTCGAATAATATATGCATA GCTATATTTTCCCATAAGTAACGGCATAGTCTGAGGTGGTGTGGTGTGAT GTGGTGATTATTTATCTCTCGTGAGGAACAGTGTGTCTCCCGCTTGCTGA TATTGTGCAAAGGCAAAAGGGGGAAACTAGCATAGCTCGATCAACTGATT GTATTTTTATTTTCTCTTCCTTTTTTCCTCCTACTTTTTCGGTTTTTGTT TTGGATACCTAGATCACCGAAGTGGAGGTTATTCTGGCCAAAAAGAATAA CGAGGCGAAGGAGCTCAAGGTGAATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig51191:385..1412+

>mRNA_H-elongata_contig51191.12377.1 ID=mRNA_H-elongata_contig51191.12377.1|Name=mRNA_H-elongata_contig51191.12377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig51191:385..1412+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGAAGAGAATCCAGAACAAACCGATGGTCAACCAGAAGTTGAG
CAAGACCCACCTACTCCGAGAGTATGCGGGAGAGATGAAGGCGAAGAGAA
TCCAGAACAAACCGATGGTCAACCAGAAGTTGAGCAAGACCCACCTACTC
CGAGAGTATGCGGGAGAGATGGAGACCCTGCGATCGATGCTTCAGGCGTC
TCGCGAGAAAAACGGGATATACGTGGAGCCCCGGCGATTCGAGGAGATGG
AGAACATGATTAGTTCTCAGAGTAATCAGATGGAGACCCTGCGATCGATG
CTTCAGGCGTCTCGCGAGAAAAACGGGATATACGTGGAGCCCCGGCGATT
CGAGGAGATGGAGAACATGATTAGTTCTCAGAGTAATCAGATCACCGAAG
TGGAGGTTATTCTGGCCAAAAAGAATAACGAGGCGAAGGAGCTCAAGGTG
AATTAAATCACCGAAGTGGAGGTTATTCTGGCCAAAAAGAATAACGAGGC
GAAGGAGCTCAAGGTGAATTAA
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