mRNA_H-elongata_contig51140.12373.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: D7FZL6_ECTSI (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL6_ECTSI) HSP 1 Score: 448 bits (1152), Expect = 3.350e-147 Identity = 226/237 (95.36%), Postives = 232/237 (97.89%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQV 711
RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEK+ATNSRKKAD+MSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTN+KLEHVYHATCIKAFNFCR TYERTTELRRLCDTLRQHISNLQKHSAAQTT+RLRGWEGW +D IELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQ+
Sbjct: 41 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKKATNSRKKADQMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNTKLEHVYHATCIKAFNFCR---TYERTTELRRLCDTLRQHISNLQKHSAAQTTNRLRGWEGWTSDGIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQI 274
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A836CG33_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG33_9STRA) HSP 1 Score: 377 bits (969), Expect = 7.960e-121 Identity = 185/237 (78.06%), Postives = 210/237 (88.61%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQV 711
RRYK WQ AYET+M+K++DLCV+LQ+HR+AKDGLHQYRNMAQQQAPGSLEVII +L+D +E RATN++ KA+ +S E ++GDLEAEA+PESIMLSTMTEEG KER DRE+VVPWLKFLWE YRAVLDILKTN+KLEHVYH TCIKAFNFCR TY RTTE RRLCDTLRQHISNLQ+H+ A +RLRGWEGW ++ IELHLQTRFAQLEVAA LELWTEGFRTVEDIYNIMQ+
Sbjct: 39 RRYKQWQKAYETLMIKFLDLCVELQRHREAKDGLHQYRNMAQQQAPGSLEVIITHLLDMSEGRATNAKMKANAISAEEVTQIGDLEAEASPESIMLSTMTEEGGKERTDREVVVPWLKFLWEAYRAVLDILKTNTKLEHVYHNTCIKAFNFCR---TYARTTEFRRLCDTLRQHISNLQRHTGAAAATRLRGWEGWTSEGIELHLQTRFAQLEVAANLELWTEGFRTVEDIYNIMQI 272
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A6V1NAU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAU3_HETAK) HSP 1 Score: 318 bits (815), Expect = 2.230e-105 Identity = 158/239 (66.11%), Postives = 193/239 (80.75%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSL-VEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
RRYKTWQ YET+M+ YMDLCV LQ+H AKDGLHQYRNM+QQQAPGSLE++IN+LVD AE RA ++ A + E A+V DLEAE++PE+I+LSTMTEEGE+ER +R +VVPWLKFLWETYRAVLDIL++NSKLEHVYH TC KAF FC + R E RRLC+T+RQH+ +LQKH A T RLRGW+G+ +S+ELHLQTRFAQL+ A LE+WTE FRT+EDIY+IMQ++
Sbjct: 39 RRYKTWQKVYETMMVAYMDLCVDLQEHLFAKDGLHQYRNMSQQQAPGSLELVINHLVDAAEARAAQAQATAXXAAAQTECAQVADLEAESSPEAILLSTMTEEGEQERRERAVVVPWLKFLWETYRAVLDILRSNSKLEHVYHGTCRKAFAFCGK---NRRMLEFRRLCETMRQHVGHLQKHVAQHTAQRLRGWDGFTPESVELHLQTRFAQLKAATALEVWTEAFRTIEDIYSIMQIN 274
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: F0XXZ4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXZ4_AURAN) HSP 1 Score: 316 bits (809), Expect = 5.280e-101 Identity = 156/239 (65.27%), Postives = 194/239 (81.17%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAK-VGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
++ +TW +E+IM +Y+D+CV+LQ HR AKDGLHQYRN++QQQAP SLEV+I YLV AE RA + A + +L AAK V DL+ E TPESIM+STMT+EG+ ER++RE +VPWLKFLWETYR+VLDIL+TNSKLE VYH T +KAF FCR+ +ER TELRRLC+TLRQH+SNLQ+ +A TSRLRGWEGW + +E+HL TRFAQLEVA+ LELWTEGFRTVEDI+ IM++S
Sbjct: 33 KKSRTWVKVFESIMFRYIDICVELQMHRHAKDGLHQYRNISQQQAPQSLEVVIQYLVKAAETRAYEAAAAAKKANLAAAAKSVADLDCEQTPESIMMSTMTDEGDGERSEREALVPWLKFLWETYRSVLDILRTNSKLEKVYHGTSVKAFEFCRK---FERKTELRRLCETLRQHLSNLQRAAATNNTSRLRGWEGWTQEGVEMHLTTRFAQLEVASALELWTEGFRTVEDIHQIMRIS 268
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S3ZQV0_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQV0_9STRA) HSP 1 Score: 295 bits (756), Expect = 1.500e-89 Identity = 147/238 (61.76%), Postives = 185/238 (77.73%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
++ +TW E+IMLKY+D+ V L+ HR AKDGLHQYRN++QQQAP SLE II +L+ E R + K+A M+L + V DLE E TPE+IMLSTMT+EG+ +R++RE++VPWLKFLWETYR+VLDILKTNSKLE VYH T +AF FC Q +ER TE+RRLC+TLR H+SNLQ+ +A T+RLRGWEGW + IELHL TRFAQLE A+ ELWTEGFRTVEDI+ +M++S
Sbjct: 39 KKSRTWVKVLESIMLKYIDIAVDLKLHRHAKDGLHQYRNISQQQAPQSLEAIIQHLLKAGESRVAKAAKEARSMNLGKGKAVADLECEQTPEAIMLSTMTDEGDGDRSEREVLVPWLKFLWETYRSVLDILKTNSKLEKVYHQTAQRAFEFCVQ---HERKTEMRRLCETLRHHLSNLQRATAQGNTNRLRGWEGWTQEGIELHLATRFAQLEAASAQELWTEGFRTVEDIHQVMRIS 273
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A6H5KUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY2_9PHAE) HSP 1 Score: 261 bits (667), Expect = 4.200e-86 Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 1
Query: 40 MLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADE------MSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCR 459
MLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEV+INYLVDQAEK+ATNSRKKAD+ MSLVEA KVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTN+KLEHVYHATCIKAFNFCR
Sbjct: 1 MLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVVINYLVDQAEKKATNSRKKADQVPGKVQMSLVEATKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNTKLEHVYHATCIKAFNFCR 146
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S2R6Z3_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Z3_9STRA) HSP 1 Score: 285 bits (728), Expect = 4.670e-86 Identity = 140/241 (58.09%), Postives = 185/241 (76.76%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSA---AQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
R+ +TWQ +YET+MLKY+DLCV+L+ + KDGLHQYRNM+Q QAPGSLEV++ + +D AE R + A+ +L EA ++ D+E TPES+MLSTMT++ +++R DR++++PWL FLWETYR+VLDILKTNSKLE VYH T +AF FC + Y+R E RRLCD LR H+SNLQK+++ A RL+ W+GW ++SIELHLQTRF QLE A LELWTEGF+TVEDI+ IMQ++
Sbjct: 39 RKPRTWQKSYETVMLKYIDLCVELRDPIRGKDGLHQYRNMSQAQAPGSLEVVVTHFIDLAESRLAKAADTAEAAALREAERMTDIEQAGTPESVMLSTMTDDSDRKRTDRQILIPWLLFLWETYRSVLDILKTNSKLELVYHNTAARAFAFCEK---YKRRLEFRRLCDLLRLHLSNLQKYASGPNAANDKRLKVWDGWTDESIELHLQTRFRQLETTAKLELWTEGFKTVEDIHGIMQIN 276
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S3K207_9STRA (Hypothetical protein n=3 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K207_9STRA) HSP 1 Score: 285 bits (728), Expect = 2.190e-85 Identity = 139/241 (57.68%), Postives = 185/241 (76.76%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQK---HSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
++ +T+ + IMLKY+DLC++LQ HR AKDGLHQYRN+ QQQAP SLE++I +L++ AE + + + + + ++ DL+ E TPESIMLSTMTEEG+ ER +RE++VPWLKF WETYR+VLDILKTNSKLE +YH T +KAF+FC++ +ER TELRRLCDTLRQH++NLQ+ + +S+ RGWEGW + +ELHL TRFAQLE A+ LELWTE FRTVEDI+ +M++S
Sbjct: 39 KKSRTYVPVLQDIMLKYLDLCIELQLHRHAKDGLHQYRNITQQQAPQSLEIVIKHLIEAAENKTNQAAASSKKYKAI--LEIADLDNEQTPESIMLSTMTEEGDAERTEREILVPWLKFSWETYRSVLDILKTNSKLEKIYHETSVKAFDFCKR---FERKTELRRLCDTLRQHLANLQRAAQQAPGTQSSKFRGWEGWTQEGVELHLTTRFAQLEAASKLELWTEAFRTVEDIHAVMKIS 274
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A448Z9Q6_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9Q6_9STRA) HSP 1 Score: 272 bits (695), Expect = 1.240e-81 Identity = 141/253 (55.73%), Postives = 188/253 (74.31%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADE---------MSLVEAAKVGDLEAEAT--PESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKH----SAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
RR++TW YE IM+ Y++LC++L + R+AKDGLHQYRN+AQ QAPGSLE +I YL+++AE + ++ AD +S++E A D E E+ P++I+LS+MT + K + D ++VP LKFLWE YRA+LDIL++NSKLEHVYHAT + AF FCR Y+R TE RRLCD LR H+ NLQK+ ++A+ S++RGWEGW +DSIELHLQTRFAQLE A+ L+L+TEGFRTVEDIYNI+Q+S
Sbjct: 39 RRHRTWSPVYEQIMIAYLNLCLKLHRAREAKDGLHQYRNLAQSQAPGSLEKVIRYLLEKAEDQCNRAKAAADAAAASESSTPLSVLEDADAEDAEGESGIGPQAILLSSMTTDPAKSQRDSLLLVPSLKFLWEIYRAILDILRSNSKLEHVYHATSVSAFQFCR---AYQRRTEFRRLCDLLRMHLGNLQKYGDDSASAKPNSKVRGWEGWTSDSIELHLQTRFAQLESASYLKLYTEGFRTVEDIYNILQIS 288
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S4R7B1_9STRA (Eukaryotic translation initiation factor 3 subunit A n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7B1_9STRA) HSP 1 Score: 270 bits (690), Expect = 1.780e-80 Identity = 138/254 (54.33%), Postives = 183/254 (72.05%), Query Frame = 1
Query: 1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKAD-----EMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAA---------QTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVSIS 720
RR+KTW YE IM+ Y++LC+ L + R+AKDGLHQYRN++Q QAPGSLE +I YL+D AEK+ ++ +AD + VE ++ DL+ +TP+SI+LSTM+ + EK + D +++P LKFLWETYRAVLDIL++NSKLE +YH + A FCR+ Y R TE RRLCD LR H+ NLQK+ + + +++RGWEGW +SIELHLQTRFAQLE A+ L L+TEGFRTVEDIYNI+Q+S S
Sbjct: 41 RRHKTWSPTYEQIMITYLNLCLSLNKSREAKDGLHQYRNLSQSQAPGSLENVIRYLIDAAEKKCKTAKAEADARGAASATAVEEDEIDDLDNASTPQSILLSTMSVDPEKTQRDSALLLPSLKFLWETYRAVLDILRSNSKLERLYHGAALGALKFCRE---YRRRTEFRRLCDMLRMHLGNLQKYGSGVVPGVEEGGKPNNKVRGWEGWTTESIELHLQTRFAQLETASVLHLYTEGFRTVEDIYNILQISHS 291 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51140.12373.1 >prot_H-elongata_contig51140.12373.1 ID=prot_H-elongata_contig51140.12373.1|Name=mRNA_H-elongata_contig51140.12373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEback to top mRNA from alignment at H-elongata_contig51140:125..3218- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51140.12373.1 ID=mRNA_H-elongata_contig51140.12373.1|Name=mRNA_H-elongata_contig51140.12373.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3094bp|location=Sequence derived from alignment at H-elongata_contig51140:125..3218- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51140:125..3218- >mRNA_H-elongata_contig51140.12373.1 ID=mRNA_H-elongata_contig51140.12373.1|Name=mRNA_H-elongata_contig51140.12373.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig51140:125..3218- (Himanthalia elongata Himel1 dioecious)back to top |