mRNA_H-elongata_contig51140.12373.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51140.12373.1
Unique NamemRNA_H-elongata_contig51140.12373.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: D7FZL6_ECTSI (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL6_ECTSI)

HSP 1 Score: 448 bits (1152), Expect = 3.350e-147
Identity = 226/237 (95.36%), Postives = 232/237 (97.89%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQV 711
            RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEK+ATNSRKKAD+MSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTN+KLEHVYHATCIKAFNFCR   TYERTTELRRLCDTLRQHISNLQKHSAAQTT+RLRGWEGW +D IELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQ+
Sbjct:   41 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKKATNSRKKADQMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNTKLEHVYHATCIKAFNFCR---TYERTTELRRLCDTLRQHISNLQKHSAAQTTNRLRGWEGWTSDGIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQI 274          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A836CG33_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG33_9STRA)

HSP 1 Score: 377 bits (969), Expect = 7.960e-121
Identity = 185/237 (78.06%), Postives = 210/237 (88.61%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQV 711
            RRYK WQ AYET+M+K++DLCV+LQ+HR+AKDGLHQYRNMAQQQAPGSLEVII +L+D +E RATN++ KA+ +S  E  ++GDLEAEA+PESIMLSTMTEEG KER DRE+VVPWLKFLWE YRAVLDILKTN+KLEHVYH TCIKAFNFCR   TY RTTE RRLCDTLRQHISNLQ+H+ A   +RLRGWEGW ++ IELHLQTRFAQLEVAA LELWTEGFRTVEDIYNIMQ+
Sbjct:   39 RRYKQWQKAYETLMIKFLDLCVELQRHREAKDGLHQYRNMAQQQAPGSLEVIITHLLDMSEGRATNAKMKANAISAEEVTQIGDLEAEASPESIMLSTMTEEGGKERTDREVVVPWLKFLWEAYRAVLDILKTNTKLEHVYHNTCIKAFNFCR---TYARTTEFRRLCDTLRQHISNLQRHTGAAAATRLRGWEGWTSEGIELHLQTRFAQLEVAANLELWTEGFRTVEDIYNIMQI 272          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A6V1NAU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAU3_HETAK)

HSP 1 Score: 318 bits (815), Expect = 2.230e-105
Identity = 158/239 (66.11%), Postives = 193/239 (80.75%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSL-VEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
            RRYKTWQ  YET+M+ YMDLCV LQ+H  AKDGLHQYRNM+QQQAPGSLE++IN+LVD AE RA  ++  A   +   E A+V DLEAE++PE+I+LSTMTEEGE+ER +R +VVPWLKFLWETYRAVLDIL++NSKLEHVYH TC KAF FC +     R  E RRLC+T+RQH+ +LQKH A  T  RLRGW+G+  +S+ELHLQTRFAQL+ A  LE+WTE FRT+EDIY+IMQ++
Sbjct:   39 RRYKTWQKVYETMMVAYMDLCVDLQEHLFAKDGLHQYRNMSQQQAPGSLELVINHLVDAAEARAAQAQATAXXAAAQTECAQVADLEAESSPEAILLSTMTEEGEQERRERAVVVPWLKFLWETYRAVLDILRSNSKLEHVYHGTCRKAFAFCGK---NRRMLEFRRLCETMRQHVGHLQKHVAQHTAQRLRGWDGFTPESVELHLQTRFAQLKAATALEVWTEAFRTIEDIYSIMQIN 274          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: F0XXZ4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXZ4_AURAN)

HSP 1 Score: 316 bits (809), Expect = 5.280e-101
Identity = 156/239 (65.27%), Postives = 194/239 (81.17%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAK-VGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
            ++ +TW   +E+IM +Y+D+CV+LQ HR AKDGLHQYRN++QQQAP SLEV+I YLV  AE RA  +   A + +L  AAK V DL+ E TPESIM+STMT+EG+ ER++RE +VPWLKFLWETYR+VLDIL+TNSKLE VYH T +KAF FCR+   +ER TELRRLC+TLRQH+SNLQ+ +A   TSRLRGWEGW  + +E+HL TRFAQLEVA+ LELWTEGFRTVEDI+ IM++S
Sbjct:   33 KKSRTWVKVFESIMFRYIDICVELQMHRHAKDGLHQYRNISQQQAPQSLEVVIQYLVKAAETRAYEAAAAAKKANLAAAAKSVADLDCEQTPESIMMSTMTDEGDGERSEREALVPWLKFLWETYRSVLDILRTNSKLEKVYHGTSVKAFEFCRK---FERKTELRRLCETLRQHLSNLQRAAATNNTSRLRGWEGWTQEGVEMHLTTRFAQLEVASALELWTEGFRTVEDIHQIMRIS 268          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S3ZQV0_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQV0_9STRA)

HSP 1 Score: 295 bits (756), Expect = 1.500e-89
Identity = 147/238 (61.76%), Postives = 185/238 (77.73%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
            ++ +TW    E+IMLKY+D+ V L+ HR AKDGLHQYRN++QQQAP SLE II +L+   E R   + K+A  M+L +   V DLE E TPE+IMLSTMT+EG+ +R++RE++VPWLKFLWETYR+VLDILKTNSKLE VYH T  +AF FC Q   +ER TE+RRLC+TLR H+SNLQ+ +A   T+RLRGWEGW  + IELHL TRFAQLE A+  ELWTEGFRTVEDI+ +M++S
Sbjct:   39 KKSRTWVKVLESIMLKYIDIAVDLKLHRHAKDGLHQYRNISQQQAPQSLEAIIQHLLKAGESRVAKAAKEARSMNLGKGKAVADLECEQTPEAIMLSTMTDEGDGDRSEREVLVPWLKFLWETYRSVLDILKTNSKLEKVYHQTAQRAFEFCVQ---HERKTEMRRLCETLRHHLSNLQRATAQGNTNRLRGWEGWTQEGIELHLATRFAQLEAASAQELWTEGFRTVEDIHQVMRIS 273          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A6H5KUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY2_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 4.200e-86
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 1
Query:   40 MLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADE------MSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCR 459
            MLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEV+INYLVDQAEK+ATNSRKKAD+      MSLVEA KVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTN+KLEHVYHATCIKAFNFCR
Sbjct:    1 MLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVVINYLVDQAEKKATNSRKKADQVPGKVQMSLVEATKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNTKLEHVYHATCIKAFNFCR 146          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S2R6Z3_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Z3_9STRA)

HSP 1 Score: 285 bits (728), Expect = 4.670e-86
Identity = 140/241 (58.09%), Postives = 185/241 (76.76%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSA---AQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
            R+ +TWQ +YET+MLKY+DLCV+L+   + KDGLHQYRNM+Q QAPGSLEV++ + +D AE R   +   A+  +L EA ++ D+E   TPES+MLSTMT++ +++R DR++++PWL FLWETYR+VLDILKTNSKLE VYH T  +AF FC +   Y+R  E RRLCD LR H+SNLQK+++   A    RL+ W+GW ++SIELHLQTRF QLE  A LELWTEGF+TVEDI+ IMQ++
Sbjct:   39 RKPRTWQKSYETVMLKYIDLCVELRDPIRGKDGLHQYRNMSQAQAPGSLEVVVTHFIDLAESRLAKAADTAEAAALREAERMTDIEQAGTPESVMLSTMTDDSDRKRTDRQILIPWLLFLWETYRSVLDILKTNSKLELVYHNTAARAFAFCEK---YKRRLEFRRLCDLLRLHLSNLQKYASGPNAANDKRLKVWDGWTDESIELHLQTRFRQLETTAKLELWTEGFKTVEDIHGIMQIN 276          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S3K207_9STRA (Hypothetical protein n=3 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K207_9STRA)

HSP 1 Score: 285 bits (728), Expect = 2.190e-85
Identity = 139/241 (57.68%), Postives = 185/241 (76.76%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQK---HSAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
            ++ +T+    + IMLKY+DLC++LQ HR AKDGLHQYRN+ QQQAP SLE++I +L++ AE +   +   + +   +   ++ DL+ E TPESIMLSTMTEEG+ ER +RE++VPWLKF WETYR+VLDILKTNSKLE +YH T +KAF+FC++   +ER TELRRLCDTLRQH++NLQ+    +    +S+ RGWEGW  + +ELHL TRFAQLE A+ LELWTE FRTVEDI+ +M++S
Sbjct:   39 KKSRTYVPVLQDIMLKYLDLCIELQLHRHAKDGLHQYRNITQQQAPQSLEIVIKHLIEAAENKTNQAAASSKKYKAI--LEIADLDNEQTPESIMLSTMTEEGDAERTEREILVPWLKFSWETYRSVLDILKTNSKLEKIYHETSVKAFDFCKR---FERKTELRRLCDTLRQHLANLQRAAQQAPGTQSSKFRGWEGWTQEGVELHLTTRFAQLEAASKLELWTEAFRTVEDIHAVMKIS 274          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A448Z9Q6_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9Q6_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.240e-81
Identity = 141/253 (55.73%), Postives = 188/253 (74.31%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKADE---------MSLVEAAKVGDLEAEAT--PESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKH----SAAQTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVS 714
            RR++TW   YE IM+ Y++LC++L + R+AKDGLHQYRN+AQ QAPGSLE +I YL+++AE +   ++  AD          +S++E A   D E E+   P++I+LS+MT +  K + D  ++VP LKFLWE YRA+LDIL++NSKLEHVYHAT + AF FCR    Y+R TE RRLCD LR H+ NLQK+    ++A+  S++RGWEGW +DSIELHLQTRFAQLE A+ L+L+TEGFRTVEDIYNI+Q+S
Sbjct:   39 RRHRTWSPVYEQIMIAYLNLCLKLHRAREAKDGLHQYRNLAQSQAPGSLEKVIRYLLEKAEDQCNRAKAAADAAAASESSTPLSVLEDADAEDAEGESGIGPQAILLSSMTTDPAKSQRDSLLLVPSLKFLWEIYRAILDILRSNSKLEHVYHATSVSAFQFCR---AYQRRTEFRRLCDLLRMHLGNLQKYGDDSASAKPNSKVRGWEGWTSDSIELHLQTRFAQLESASYLKLYTEGFRTVEDIYNILQIS 288          
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Match: A0A7S4R7B1_9STRA (Eukaryotic translation initiation factor 3 subunit A n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7B1_9STRA)

HSP 1 Score: 270 bits (690), Expect = 1.780e-80
Identity = 138/254 (54.33%), Postives = 183/254 (72.05%), Query Frame = 1
Query:    1 RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLEVIINYLVDQAEKRATNSRKKAD-----EMSLVEAAKVGDLEAEATPESIMLSTMTEEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFNFCRQVLTYERTTELRRLCDTLRQHISNLQKHSAA---------QTTSRLRGWEGWNNDSIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVSIS 720
            RR+KTW   YE IM+ Y++LC+ L + R+AKDGLHQYRN++Q QAPGSLE +I YL+D AEK+   ++ +AD       + VE  ++ DL+  +TP+SI+LSTM+ + EK + D  +++P LKFLWETYRAVLDIL++NSKLE +YH   + A  FCR+   Y R TE RRLCD LR H+ NLQK+ +          +  +++RGWEGW  +SIELHLQTRFAQLE A+ L L+TEGFRTVEDIYNI+Q+S S
Sbjct:   41 RRHKTWSPTYEQIMITYLNLCLSLNKSREAKDGLHQYRNLSQSQAPGSLENVIRYLIDAAEKKCKTAKAEADARGAASATAVEEDEIDDLDNASTPQSILLSTMSVDPEKTQRDSALLLPSLKFLWETYRAVLDILRSNSKLERLYHGAALGALKFCRE---YRRRTEFRRLCDMLRMHLGNLQKYGSGVVPGVEEGGKPNNKVRGWEGWTTESIELHLQTRFAQLETASVLHLYTEGFRTVEDIYNILQISHS 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51140.12373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL6_ECTSI3.350e-14795.36Eukaryotic translation initiation factor 3 subunit... [more]
A0A836CG33_9STRA7.960e-12178.06Eukaryotic translation initiation factor 3 subunit... [more]
A0A6V1NAU3_HETAK2.230e-10566.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0XXZ4_AURAN5.280e-10165.27PCI domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S3ZQV0_9STRA1.500e-8961.76Eukaryotic translation initiation factor 3 subunit... [more]
A0A6H5KUY2_9PHAE4.200e-8692.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2R6Z3_9STRA4.670e-8658.09Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S3K207_9STRA2.190e-8557.68Hypothetical protein n=3 Tax=Aureoumbra lagunensis... [more]
A0A448Z9Q6_9STRA1.240e-8155.73Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4R7B1_9STRA1.780e-8054.33Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51140contigH-elongata_contig51140:125..3218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.4
Seed ortholog evalue7e-125
Seed eggNOG ortholog2880.D7FZL6
Preferred nameTIF32
KEGG koko:K03254
KEGG Pathwayko03013,map03013
GOsGO:0000131,GO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070887,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG2072@1,KOG2072@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryother localisation
Exons5
Model size744
Cds size744
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51140.12373.1prot_H-elongata_contig51140.12373.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51140 125..3218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.8543148-CDS-H-elongata_contig51140:124..3131622930837.8543148-CDS-H-elongata_contig51140:124..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 125..313 -
1691679591.7583475-CDS-H-elongata_contig51140:124..3131691679591.7583475-CDS-H-elongata_contig51140:124..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 125..313 -
1622930837.8666773-CDS-H-elongata_contig51140:924..10121622930837.8666773-CDS-H-elongata_contig51140:924..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 925..1012 -
1691679591.7704136-CDS-H-elongata_contig51140:924..10121691679591.7704136-CDS-H-elongata_contig51140:924..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 925..1012 -
1622930837.8788285-CDS-H-elongata_contig51140:1640..18881622930837.8788285-CDS-H-elongata_contig51140:1640..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 1641..1888 -
1691679591.7870405-CDS-H-elongata_contig51140:1640..18881691679591.7870405-CDS-H-elongata_contig51140:1640..1888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 1641..1888 -
1622930837.9005322-CDS-H-elongata_contig51140:2405..24741622930837.9005322-CDS-H-elongata_contig51140:2405..2474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 2406..2474 -
1691679591.8012636-CDS-H-elongata_contig51140:2405..24741691679591.8012636-CDS-H-elongata_contig51140:2405..2474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 2406..2474 -
1622930837.947163-CDS-H-elongata_contig51140:3068..32181622930837.947163-CDS-H-elongata_contig51140:3068..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 3069..3218 -
1691679591.8101635-CDS-H-elongata_contig51140:3068..32181691679591.8101635-CDS-H-elongata_contig51140:3068..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51140 3069..3218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51140.12373.1

>prot_H-elongata_contig51140.12373.1 ID=prot_H-elongata_contig51140.12373.1|Name=mRNA_H-elongata_contig51140.12373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp
RRYKTWQTAYETIMLKYMDLCVQLQQHRQAKDGLHQYRNMAQQQAPGSLE
VIINYLVDQAEKRATNSRKKADEMSLVEAAKVGDLEAEATPESIMLSTMT
EEGEKERADREMVVPWLKFLWETYRAVLDILKTNSKLEHVYHATCIKAFN
FCRQVLTYERTTELRRLCDTLRQHISNLQKHSAAQTTSRLRGWEGWNNDS
IELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQVSISISLWKKW*
back to top

mRNA from alignment at H-elongata_contig51140:125..3218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51140.12373.1 ID=mRNA_H-elongata_contig51140.12373.1|Name=mRNA_H-elongata_contig51140.12373.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3094bp|location=Sequence derived from alignment at H-elongata_contig51140:125..3218- (Himanthalia elongata Himel1 dioecious)
AGGCGTTACAAGACATGGCAGACCGCCTACGAGACCATCATGCTCAAGTA CATGGACCTGTGCGTGCAGCTGCAGCAGCACCGCCAGGCGAAGGATGGTC TCCACCAGTACCGCAACATGGCGCAGCAGCAGGCCCCGGGATCTCTCGAG GTACCCATCCACGAAAGCTTGTCTTTTTTTTGTAATCTCCTCTTATCCAT TTTATATATACTTACTATTTTTGTTGGTGAGTCGGTCGCGACTTGAGTTG ATTTTTTTTCAAGTTTTTCTTGAAATTCTAAATATTCTGAAGTTGTTTAA ATTCTCCAATTATCCACGCCTTCCCACCGGCGGCCTAAATTTGACGTTAG CGGCTTTCTGCCCGTCTTTTGTCCGCAGTGGATTAATTAGTGTTCAAAAT ATACCACATATTTCTCGATATAAAGGTTGGCTGTATCTTGCCCGTGAAGC TGTACACAAAATAGAATGCATTTTGGATAAGGGTGGGGGGGAGCGCTTCT AGAGGAATCGAGTCTGAGCCATTTGTTTCCTCAAGAAGTGCTCCCTCCTC CCCCCGCCCTCCCCTGCTCAACCCGCTCGGCCATTAAAACCCCAGCTGAG ATCAATATTTTTGTTATAGTATTATAGTACTTGGTTTTGATACATATATG TTTAATTGATGGAAGATACGCTGTTATAGACTCAAACATGCTATTTTTAT GATCAGATGTTGCTTTACCGTTTTAAAAATTTATTTTGTATAAGGTGATT ATCAACTATCTGGTCGACCAGGCGGAGAAGAGGGCCACCAACAGCCGGAA GAAGGCCGACGAGGTTTGTATAGCGCTTTGGGAGGCATGCTGCGTGACAA ATGATTGTAGATTGTTTCCTGTCTACCTTCGAAGCCACCAAAAGCGGCGC GTTCGTTTCCCTTAAGTGATTATGTGTGATGCTCTGTGATGGGAGATGGG TAAGGCGGCAATCCGACGAAGCTGGCTTCGGTGTGATGGAAAGCGTACGT GCTATAACGTTTGGCTAGAGTGACTCAGTCATTGTCCACAACATGTTCGA TTTTTTCAGGTTACGATTGCTCTACTACATGTGTAGCGTCAACTTGCGGC TGGCTTTGTTCTTGCTCTGCTCTGCTACTGTTTTATGCCAGTATATGTTA ATGTGTGTGTGTGTGGGTGTTTTCCCCTGACTTTAAGATAGCCTCACTTT TAATATGTCGAAACAGTGCTGGCTGTAGACGTGGCTAATTCCTTCATTTT CAGCTTCATCGTGGGAAGCACACTGGCACATGCCCAATCCTCGGCATCTT CTATCCCTGTACTATCCTCCCGTCTCTCAGATGTCGCTGGTGGAAGCAGC CAAGGTGGGTGATTTGGAAGCGGAAGCCACCCCGGAGAGTATCATGCTTT CGACTATGACGGAGGAAGGAGAGAAGGAGCGCGCAGACCGGGAAATGGTG GTCCCGTGGTTGAAGTTTCTGTGGGAGACCTACCGCGCGGTGCTGGACAT ACTTAAGACAAACTCCAAGCTCGAGCACGTATACCACGCCACGTGCATCA AGGCCTTCAACTTCTGCCGGCAAGTCTTGTCAAGATTTTCCAGTGGAATC AACCTTGGCGTAAAAATATCTAGTGCGAGGCGTGGTTTTCAGGAGGCAAA GGGAGCCACATTTTTTTGCTAGACGAAAGTTTAAGGCATTAAAAAAAAAA ATCTCCGGGAAGTTATAACGAAAAAAGTGTGATATTATTTTATAGGGACA AAGTCAGGCGTCACTGTCGTTATCTGTGAGCAGGCGTTTTTGGCGTTAGA GCGCCCCCGCTCTCGCCTCCAGGACGCGATCGCACCCCCCTTGCTTGATC GTTGCGACCACTAAAAGGTGATTGTTGTGGCCGTCATGACGCGCGCAGCC ACAGCCGCGCTCATTTATACGTATATATTGATGCCCTCCGCCCATGGAAT CGATCCACTATATTCCCGCACTAATCTGTACCTGGTACTATAATACTATA TTTTGCCGACCATTGCCTCGCTCCTTGACCTATGAATGGCCCTTCATTTC CGTTATTAATTCGTATAGCGTGAGGTAAAACGGGCCGCGGCGGCACGTGA CGTCATGACGAGGCGTGGCGGTCTGATCCCCGCCTTGTTGCCATCATTCC GTGTGTCGCGTATTTGGTTATGTTTCGGTTATTTGTTCTTTTGGCCGTTC CGTCAGGACTTACGAGAGGACCACCGAGCTTCGGCGCCTCTGCGACACCT TGAGGCAGCACATCTCCAACCTGCAGAAGCATTCCGCAGCCCAGGTTTGT ACCTCCTGAGACACGCCAACGACCCCGTATGAAATCCTCGCGAAGTAGCT TTTGTTGCTTTCTCCTTCTCAAATGTGGCCGTTTTACCGATTCGATTTGT TACCATTTCGCACTACGGTAGTCTCAAGTGTGTACCGAACAGGGGAGAGA ACATTTAAAATTGAAATGAAATAAAAAAATGTCCCTGCTCAATCGTCTAA GCAAGAGGTTTTTGTTTGATCGCCGACGTTGTCATTTTTTCTTTTTGCTC ATGGAGTATAAAAATACCATTCAATGTTGTAGGTAACCAGTCTCACCTAC TGCAGTGTTGCGCATCCTGCCCTTGGTCTTAAGGGATCAATCAGACCATC TCCCCCCGATTGACTCACGCCTCCTTACGATTTCATTATCGTCATGGAAG CTCAGCACTGCTACAGATCGATTAAGTGGTGGAGAATATTAGTCTCCCGT GGGCGGGCGTGTTACCTCCAGCACACCACTAGGCGTCGAGCACTGGTGCT GACGGGGTATTACGATGAGGGGAGGGGCATTCTGGTTGTTCGCACTCTTT CTGACGGAGTTGATTTGATTTTGTTGTCTCTGATCGGGGGTTTTCGGCCA ATCAGACGACGAGCCGTCTCCGCGGGTGGGAAGGATGGAACAACGACAGC ATCGAGCTGCATCTACAGACGCGCTTCGCCCAGCTAGAGGTGGCCGCTGG CTTGGAGCTCTGGACAGAGGGTTTCCGCACCGTGGAAGATATCTACAACA TCATGCAGGTCTCTATCTCTATTTCCCTCTGGAAAAAATGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51140:125..3218-

>mRNA_H-elongata_contig51140.12373.1 ID=mRNA_H-elongata_contig51140.12373.1|Name=mRNA_H-elongata_contig51140.12373.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig51140:125..3218- (Himanthalia elongata Himel1 dioecious)
AGGCGTTACAAGACATGGCAGACCGCCTACGAGACCATCATGCTCAAGTA
CATGGACCTGTGCGTGCAGCTGCAGCAGCACCGCCAGGCGAAGGATGGTC
TCCACCAGTACCGCAACATGGCGCAGCAGCAGGCCCCGGGATCTCTCGAG
AGGCGTTACAAGACATGGCAGACCGCCTACGAGACCATCATGCTCAAGTA
CATGGACCTGTGCGTGCAGCTGCAGCAGCACCGCCAGGCGAAGGATGGTC
TCCACCAGTACCGCAACATGGCGCAGCAGCAGGCCCCGGGATCTCTCGAG
GTGATTATCAACTATCTGGTCGACCAGGCGGAGAAGAGGGCCACCAACAG
CCGGAAGAAGGCCGACGAGGTGATTATCAACTATCTGGTCGACCAGGCGG
AGAAGAGGGCCACCAACAGCCGGAAGAAGGCCGACGAGATGTCGCTGGTG
GAAGCAGCCAAGGTGGGTGATTTGGAAGCGGAAGCCACCCCGGAGAGTAT
CATGCTTTCGACTATGACGGAGGAAGGAGAGAAGGAGCGCGCAGACCGGG
AAATGGTGGTCCCGTGGTTGAAGTTTCTGTGGGAGACCTACCGCGCGGTG
CTGGACATACTTAAGACAAACTCCAAGCTCGAGCACGTATACCACGCCAC
GTGCATCAAGGCCTTCAACTTCTGCCGGCAAGTCTTATGTCGCTGGTGGA
AGCAGCCAAGGTGGGTGATTTGGAAGCGGAAGCCACCCCGGAGAGTATCA
TGCTTTCGACTATGACGGAGGAAGGAGAGAAGGAGCGCGCAGACCGGGAA
ATGGTGGTCCCGTGGTTGAAGTTTCTGTGGGAGACCTACCGCGCGGTGCT
GGACATACTTAAGACAAACTCCAAGCTCGAGCACGTATACCACGCCACGT
GCATCAAGGCCTTCAACTTCTGCCGGCAAGTCTTGACTTACGAGAGGACC
ACCGAGCTTCGGCGCCTCTGCGACACCTTGAGGCAGCACATCTCCAACCT
GCAGAAGCATTCCGCAGCCCAGGACTTACGAGAGGACCACCGAGCTTCGG
CGCCTCTGCGACACCTTGAGGCAGCACATCTCCAACCTGCAGAAGCATTC
CGCAGCCCAGACGACGAGCCGTCTCCGCGGGTGGGAAGGATGGAACAACG
ACAGCATCGAGCTGCATCTACAGACGCGCTTCGCCCAGCTAGAGGTGGCC
GCTGGCTTGGAGCTCTGGACAGAGGGTTTCCGCACCGTGGAAGATATCTA
CAACATCATGCAGGTCTCTATCTCTATTTCCCTCTGGAAAAAATGGTGAA
CGACGAGCCGTCTCCGCGGGTGGGAAGGATGGAACAACGACAGCATCGAG
CTGCATCTACAGACGCGCTTCGCCCAGCTAGAGGTGGCCGCTGGCTTGGA
GCTCTGGACAGAGGGTTTCCGCACCGTGGAAGATATCTACAACATCATGC
AGGTCTCTATCTCTATTTCCCTCTGGAAAAAATGGTGA
back to top