mRNA_H-elongata_contig51045.12365.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51045.12365.1
Unique NamemRNA_H-elongata_contig51045.12365.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.930e-32
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 3 
Query:   30 ATLEPTREVFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            ATL+P REV+APKCLCLLSTWPYF  FREW LNLYRISLSP QIPLERY+ NFLLEVPTPSPGRVEV
Sbjct:  306 ATLDPEREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEV 372
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 9.080e-32
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 3 
Query:   33 TLEPTREVFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            TL+P REV+APKCLCLLSTWPYF  FREW LNLYRISLSP QIPLERY+ NFLLEVPTPSPGRVEV
Sbjct:  112 TLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEV 177
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A835ZGT0_9STRA (UDENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.870e-21
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 3 
Query:   36 LEPTREVFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            L P   +F PKCLCLLS+WP+F  +REW  NL+ ISLSP  IPLERYI NF+LEVP   PGR EV
Sbjct:  162 LGPEEALFTPKCLCLLSSWPFFTSYREWLTNLFLISLSPSDIPLERYICNFMLEVPNAVPGRTEV 226
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A4D9DDS2_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDS2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.650e-20
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 3 
Query:   54 VFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            VFAPKCLCLLS +P+    R W L LYR+S SP +IPLERYI NFLLEVPTP PGRV+V
Sbjct:  188 VFAPKCLCLLSKYPFVEASRTWLLQLYRLSCSPTRIPLERYICNFLLEVPTPVPGRVDV 246
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A7S2RHS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHS4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.320e-16
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 3 
Query:   48 REVFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            +  + PKCLC+LS WP+ +Q+R +   LYR+S+SPV +PLER ISNF+ EVP P PG+V +
Sbjct:  124 KRFYVPKCLCILSHWPFRSQYRTFLTQLYRLSISPVTVPLERIISNFVCEVPVPPPGKVRI 184
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A0H5R8J7_9EUKA (UDENN domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R8J7_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 1.340e-14
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:   57 FAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            FAPKC+C+LS+WP+F   R +   LYRISL+P  IPLER++ NF+ EVP P  G V+V
Sbjct:  265 FAPKCICILSSWPFFGPMRTFLTQLYRISLTPTPIPLERHLVNFMREVPVPPRGGVKV 322
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A6G0WGL3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGL3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.410e-14
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:   33 TLEPTREVFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            T      V++PKCL ++S +P+F+ FR +   +YR+SLS   +PLERYI+NF+ E+P P PGRV+V
Sbjct:  287 TTSTATSVYSPKCLVVVSHYPFFSCFRTFLQQMYRVSLSETPLPLERYIANFVAEIPVPPPGRVQV 352
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A0P1AAR3_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAR3_PLAHL)

HSP 1 Score: 75.5 bits (184), Expect = 3.420e-14
Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 3 
Query:   54 VFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            VF PKC+ + S +PYF+ FR++   +YR++LS   +P+ERYI+NFL+E+P P PGR++V
Sbjct:  367 VFCPKCILVTSHYPYFSAFRQFLQQIYRVTLSESPMPIERYIANFLVEIPLPPPGRIQV 425
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: A0A3P3YNM5_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YNM5_PLABS)

HSP 1 Score: 75.1 bits (183), Expect = 4.660e-14
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 3 
Query:   39 EPTREVFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            E    V+ P+CL L+S WP+   F  W   LYRISLS   +PLER+I NF+ EVP P PG++ V
Sbjct:  280 EQATSVYTPRCLLLISHWPFLVTFERWLSVLYRISLSSAPLPLERFIGNFVSEVPVPPPGKIAV 343
[Close]
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Match: W4GEP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEP0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.670e-14
Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 3 
Query:   54 VFAPKCLCLLSTWPYFAQFREWFLNLYRISLSPVQIPLERYISNFLLEVPTPSPGRVEV 230
            V++PKC+ +LS +P+F+ FR +   +YR+SLS   +PLERY++NF+ E+P P PGRV+V
Sbjct:  283 VYSPKCIVVLSQYPFFSAFRTFLQQIYRLSLSEAPLPLERYVANFVSEIPVPPPGRVQV 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51045.12365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA5_9PHAE1.930e-3286.57UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FMH7_ECTSI9.080e-3286.36UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGT0_9STRA5.870e-2164.62UDENN domain-containing protein n=1 Tax=Tribonema ... [more]
A0A4D9DDS2_9STRA9.650e-2071.19UDENN domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S2RHS4_9STRA2.320e-1654.10Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A0H5R8J7_9EUKA1.340e-1456.90UDENN domain-containing protein n=1 Tax=Spongospor... [more]
A0A6G0WGL3_9STRA3.410e-1448.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0P1AAR3_PLAHL3.420e-1450.85Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A3P3YNM5_PLABS4.660e-1450.00Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
W4GEP0_9STRA4.670e-1450.85Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51045contigH-elongata_contig51045:2802..4041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.8044112-CDS-H-elongata_contig51045:2801..29591622930836.8044112-CDS-H-elongata_contig51045:2801..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51045 2802..2959 +
1691679591.4419072-CDS-H-elongata_contig51045:2801..29591691679591.4419072-CDS-H-elongata_contig51045:2801..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51045 2802..2959 +
1622930836.823926-CDS-H-elongata_contig51045:3968..40411622930836.823926-CDS-H-elongata_contig51045:3968..4041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51045 3969..4041 +
1691679591.452657-CDS-H-elongata_contig51045:3968..40411691679591.452657-CDS-H-elongata_contig51045:3968..4041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51045 3969..4041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51045.12365.1prot_H-elongata_contig51045.12365.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51045 2802..4041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51045.12365.1

>prot_H-elongata_contig51045.12365.1 ID=prot_H-elongata_contig51045.12365.1|Name=mRNA_H-elongata_contig51045.12365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RVTKRRRTFRRLWSPHEKCSRPSVCACFRRGHTSHSSGSGSSIFTEYPCP
LSRFLWSGILVTSCWRCPLLRLVGSR*
back to top

mRNA from alignment at H-elongata_contig51045:2802..4041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51045.12365.1 ID=mRNA_H-elongata_contig51045.12365.1|Name=mRNA_H-elongata_contig51045.12365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1240bp|location=Sequence derived from alignment at H-elongata_contig51045:2802..4041+ (Himanthalia elongata Himel1 dioecious)
AGGGTGACGAAGAGGAGGAGAACCTTCCGGCGACTCTGGAGCCCACACGA
GAAGTGTTCGCGCCCAAGTGTCTGTGCCTGCTTTCGACGTGGCCATACTT
CGCACAGTTCCGGGAGTGGTTCCTCAATCTTTACCGAATATCCCTGTCCC
CTGTCCAGGTCGAGATGTTTTCTTACCGTAGCCGCCGCCGTCTATACTGG
AACCTAGTAATTGACCCATGATGCCTTCCCAAGCCATGTACATAAAGTCT
AGAGTACCTCGGGTACTTTTTGCACGAAAAAATGTGAAAAGAGAGAGTCT
AGGGGGTTGGAGGGGGGGGGGGGGTTAACAACGGATGCCTGCTGGTTTTA
CCCTCGTTTTTTAAATGGGTTTCTCCAGTTGTGGAAGGGGAATATTGGCG
GGGGAAAGGCAGAGTGGAAGGAGGATGATTATTTGTTTTACCCCTCCGGT
TTGAAGTTAGTTGAGTGTAGAATAGAGATAAAAGGGTGATGTTGGAATGG
CTACAGCGGGGAGGTGCTGCTTTGTTGTAACACACAAATTGGTGTTGGTG
ATGACGTTAACTGTAGGTCAGAGCGCAAGTGGCTCGCATGGTTCACAGCT
ACCATAATACTCCAGTATTGAACTTGGTCCGACAAGAGCCATCTAATAAT
AGGAGTAGTTTGAAAGGATTGTCAGGCCTCGCAACCCGTTTTTGGCCGTA
GTTTTCGTCTCGGGGTTTCCATTTTTCCAGGAAGGATGCTCCCTCCCAGC
GGGAGAGGGGGCATGTCAGGTTAACATTCTTGGCTCCGGAGGGAAAACGC
CGAAAATGAACTAGGCTCTCATATATCAGTTTTTCTCTCTTGTCGGGATT
CGAACCTCAGGTCTTATTTTTTCTGGTTTGGCACAATTTTTTCAACCGAC
GTTCCCTTCAAGAACAGCTGTAGTAGCTAGTGCCTTTAACGGCTTCGAAA
AACGATGTTCCAAAAACCAATCGCGGATTTGGCGTGGCCTATTTCTTTTG
CGCCCTCCAAGATCAACAATCTTCCTGAAAACAAGAAACGGGTGTGTTAA
AAAAATAAAATAAATAATAATAAAGTATTTGTAAAATTATTTATTTTTTA
CTTGTTTTGGCTGCGCTTACGTACGGCCTTGTTTCTTTGTACCGTGGGCG
TCTCGAAAACGCGACAGATTCCTTTGGAGCGGTATATTAGTAACTTCCTG
CTGGAGGTGCCCACTCCTTCGCCTGGTAGGGTCGAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51045:2802..4041+

>mRNA_H-elongata_contig51045.12365.1 ID=mRNA_H-elongata_contig51045.12365.1|Name=mRNA_H-elongata_contig51045.12365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig51045:2802..4041+ (Himanthalia elongata Himel1 dioecious)
AGGGTGACGAAGAGGAGGAGAACCTTCCGGCGACTCTGGAGCCCACACGA
GAAGTGTTCGCGCCCAAGTGTCTGTGCCTGCTTTCGACGTGGCCATACTT
CGCACAGTTCCGGGAGTGGTTCCTCAATCTTTACCGAATATCCCTGTCCC
CTGTCCAGAGGGTGACGAAGAGGAGGAGAACCTTCCGGCGACTCTGGAGC
CCACACGAGAAGTGTTCGCGCCCAAGTGTCTGTGCCTGCTTTCGACGTGG
CCATACTTCGCACAGTTCCGGGAGTGGTTCCTCAATCTTTACCGAATATC
CCTGTCCCCTGTCCAGATTCCTTTGGAGCGGTATATTAGTAACTTCCTGC
TGGAGGTGCCCACTCCTTCGCCTGGTAGGGTCGAGGTGAATTCCTTTGGA
GCGGTATATTAGTAACTTCCTGCTGGAGGTGCCCACTCCTTCGCCTGGTA
GGGTCGAGGTGA
back to top