mRNA_H-elongata_contig51024.12362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51024.12362.1
Unique NamemRNA_H-elongata_contig51024.12362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51024.12362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51024contigH-elongata_contig51024:824..2266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size422
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51024.12362.1prot_H-elongata_contig51024.12362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51024 824..2266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.5324197-CDS-H-elongata_contig51024:823..9761622930836.5324197-CDS-H-elongata_contig51024:823..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51024 824..976 +
1691679591.329467-CDS-H-elongata_contig51024:823..9761691679591.329467-CDS-H-elongata_contig51024:823..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51024 824..976 +
1622930836.5452135-CDS-H-elongata_contig51024:1336..14641622930836.5452135-CDS-H-elongata_contig51024:1336..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51024 1337..1464 +
1691679591.342164-CDS-H-elongata_contig51024:1336..14641691679591.342164-CDS-H-elongata_contig51024:1336..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51024 1337..1464 +
1622930836.5626054-CDS-H-elongata_contig51024:2127..22661622930836.5626054-CDS-H-elongata_contig51024:2127..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51024 2128..2266 +
1691679591.3514307-CDS-H-elongata_contig51024:2127..22661691679591.3514307-CDS-H-elongata_contig51024:2127..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51024 2128..2266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51024.12362.1

>prot_H-elongata_contig51024.12362.1 ID=prot_H-elongata_contig51024.12362.1|Name=mRNA_H-elongata_contig51024.12362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MTFGWDPAGDPTHSWKEGGRDISCACRILDLKRLTVWFTSHTQRGSRHHR
KLRYLPIGFGGFITRNGLPQSAYLDNAKQRLRLMEDCPHEMKGSYVLLFA
CNTLERYPRAEIWHSMTSQDGQPIPINRCPLPAINMVSAA
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mRNA from alignment at H-elongata_contig51024:824..2266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51024.12362.1 ID=mRNA_H-elongata_contig51024.12362.1|Name=mRNA_H-elongata_contig51024.12362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig51024:824..2266+ (Himanthalia elongata Himel1 dioecious)
ATGACCTTTGGCTGGGATCCTGCTGGAGACCCCACGCACAGTTGGAAAGA
GGGGGGGCGGGATATCAGCTGCGCGTGCAGGATCCTGGACCTCAAGAGAC
TGACTGTGTGGTTTACCTCGCACACGCAGCGCGGCTCGCGCCATCACCGT
AAGGTGAGCGTGATGAAGGAAGAAAATAACATCGCGTTGGTTGTTGCCGT
TCCACGCGAAAGGATATGGTGTCGCTTTTATCCCCCGCCCTTTCCGCCGT
GTGCTTTCTCCGGTTAAAAGTGCGTTAAATTCGTTGCATTTCTGGCTGGA
TGTAACACGCCCGATGCTCGATCTTTTGGATCGCTGGAAGCGCGTTCATG
TGTCGGTCGTTTCTTCTGCTTCTTGAACAACCAAAAAATGTCTGACTTAT
GCGCCCAAGCGTGCAAGAATGTGTATCCGCTCCAGCGGGATAGTGAGTGT
TTCCACCCACACGCATACCGTCCGTGGCGGTGGCGGCCCTCCCTCTTACC
CAACAACTAGCAGCTCCGCTACCTACCGATCGGCTTCGGCGGCTTCATCA
CGCGCAACGGATTGCCGCAGTCAGCATACCTAGACAATGCAAAGCAACGG
CTGAGACTCATGGAAGACTGTCCTCACGAGATGAAAGGCAGGTGCGTTGT
TTGTGCAATATTCTTCTGCTCAGCACGCAAACAAAACTACAATCCGTGAT
TGGGTGAGAGAAAACACCGTCCGTCATTGCATCAGCGGCGATGTTTCTTG
GGCGATCCGAATGGATCACCCTATTTGTTTGCGTTACGACGCGGACTCGT
TGGTTCCTTTCTTCTCACGACCTAATACAACAGGTTACAGCGTTGGTAAG
GAGCAGATGTATGCATATAACTAATGTTGATGAGCATTCGGAAAGTGCAG
GATTGATGCCCATGTGCCCACGTCCCCGGAGCGCTTGGTTTCGGGGGATG
TTGCCAATGTTCTGAATTGCTAGGGAATAGAGTATTTTTTCAGGTAAAAC
TCATACGTTTGGAGACTGCGGTCGATGGTGATTGAGTGACGGGAACGTAC
TCTCGTGTTTCGGGGGATTCCAGGGATCTCTTTAAAATCTTGGCATACGC
TACACTGCCAATCGTAATTATACTAGTACATTACCGAGCCCCTCCACCCT
GAAACCAATGCTATCTTGTTTGTATGATGTTTCGTCGTTTGTCCGTTCCT
TTGTCCACGAACGCTCAATACCGGCCATGTGGAACACGACACGCCGGCAT
TTTTTTCCCACCTTTTGGGATGATATCGGCTTTTCGTGGGTGTTCTTTCC
GTAGCTACGTCCTTCTCTTTGCTTGCAACACGTTGGAACGCTACCCTCGC
GCGGAAATATGGCACAGCATGACATCGCAAGACGGGCAACCTATTCCCAT
AAACCGATGTCCACTGCCCGCCATCAACATGGTGTCTGCTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig51024:824..2266+

>mRNA_H-elongata_contig51024.12362.1 ID=mRNA_H-elongata_contig51024.12362.1|Name=mRNA_H-elongata_contig51024.12362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig51024:824..2266+ (Himanthalia elongata Himel1 dioecious)
ATGACCTTTGGCTGGGATCCTGCTGGAGACCCCACGCACAGTTGGAAAGA
GGGGGGGCGGGATATCAGCTGCGCGTGCAGGATCCTGGACCTCAAGAGAC
TGACTGTGTGGTTTACCTCGCACACGCAGCGCGGCTCGCGCCATCACCGT
AAGATGACCTTTGGCTGGGATCCTGCTGGAGACCCCACGCACAGTTGGAA
AGAGGGGGGGCGGGATATCAGCTGCGCGTGCAGGATCCTGGACCTCAAGA
GACTGACTGTGTGGTTTACCTCGCACACGCAGCGCGGCTCGCGCCATCAC
CGTAAGCTCCGCTACCTACCGATCGGCTTCGGCGGCTTCATCACGCGCAA
CGGATTGCCGCAGTCAGCATACCTAGACAATGCAAAGCAACGGCTGAGAC
TCATGGAAGACTGTCCTCACGAGATGAAAGGCAGCTCCGCTACCTACCGA
TCGGCTTCGGCGGCTTCATCACGCGCAACGGATTGCCGCAGTCAGCATAC
CTAGACAATGCAAAGCAACGGCTGAGACTCATGGAAGACTGTCCTCACGA
GATGAAAGGCAGCTACGTCCTTCTCTTTGCTTGCAACACGTTGGAACGCT
ACCCTCGCGCGGAAATATGGCACAGCATGACATCGCAAGACGGGCAACCT
ATTCCCATAAACCGATGTCCACTGCCCGCCATCAACATGGTGTCTGCTGC
GCTACGTCCTTCTCTTTGCTTGCAACACGTTGGAACGCTACCCTCGCGCG
GAAATATGGCACAGCATGACATCGCAAGACGGGCAACCTATTCCCATAAA
CCGATGTCCACTGCCCGCCATCAACATGGTGTCTGCTGCG
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