mRNA_H-elongata_contig50938.12351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50938.12351.1
Unique NamemRNA_H-elongata_contig50938.12351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 159 bits (403), Expect = 9.450e-43
Identity = 75/133 (56.39%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATLGFEEGCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A GD+ RR++G V CR+YG  LAE+F+P GQ GVA   G E++A  A L  ++G  + +YD  N FNSM R   LPALA+LIP ++PYA ++YARE PKLL+  D  G+ V+ SA GVQQGCNLGPLCYS
Sbjct: 1232 RPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDS-GMAVIPSATGVQQGCNLGPLCYS 1363          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A5J4YT00_PORPP (Retrotransposable element n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT00_PORPP)

HSP 1 Score: 70.1 bits (170), Expect = 2.290e-11
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATLGFEE--GCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G++LRRV+G +     G   AE  +P  Q GV    G+E   L   L   +  G ++   D AN FN + R   +  +    P++ P   S YA  +P  +      G  V+ SA GVQQG  LGPL +S
Sbjct:  823 RPIAVGELLRRVLGKLVLAHLGSDAAESLRP-DQYGVGRPAGLEGAVLGTRLAAMQSPGAAVLLVDIANAFNCVDRPTLMRIVQGRFPALWPLVRSTYAHPAPLRV------GAHVLASACGVQQGDPLGPLLFS 950          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A5J4Z8D0_PORPP (Retrotransposable element n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8D0_PORPP)

HSP 1 Score: 69.7 bits (169), Expect = 2.900e-11
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATLGFEE--GCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G++LRRV+G +     G   AE  +P  Q GV    G+E   L   L   +  G ++   D AN FN + R   +  +    P++ P   S YA  +P  +      G  V+ SA GVQQG  LGPL +S
Sbjct:  214 RPIAVGELLRRVLGKLVLAHLGSDAAESLRP-DQYGVGRPAGLEGAVLGTRLAAMQSPGTAVLLVDIANAFNCVDRPTLMRIVQGRFPALWPLVRSTYAHPAPLRV------GAHVLASACGVQQGDPLGPLLFS 341          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A5J4YHT1_PORPP (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHT1_PORPP)

HSP 1 Score: 69.7 bits (169), Expect = 3.000e-11
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATLGFEE--GCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G++LRRV+G +     G   AE  +P  Q GV    G+E   L   L   +  G ++   D AN FN + R   +  +    P++ P   S YA  +P  +      G  V+ SA GVQQG  LGPL +S
Sbjct:  604 RPIAVGELLRRVLGKLVLAHLGSDAAESLRP-DQYGVGRPAGLEGAVLGTRLAAMQSPGTAVLLVDIANAFNCVDRPTLMRIVQGRFPALWPLVRSTYAHPAPLRV------GAHVLASACGVQQGDPLGPLLFS 731          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A5J4YQP2_PORPP (Retrotransposable element n=3 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQP2_PORPP)

HSP 1 Score: 69.7 bits (169), Expect = 3.070e-11
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATLGFEE--GCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G++LRRV+G +     G   AE  +P  Q GV    G+E   L   L   +  G ++   D AN FN + R   +  +    P++ P   S YA  +P  +      G  V+ SA GVQQG  LGPL +S
Sbjct:  597 RPIAVGELLRRVLGKLVLAHLGSDAAESLRP-DQYGVGRPAGLEGAVLGTRLAAMQSPGTAVLLVDIANAFNCVDRPTLMRIVQGRFPALWPLVRSTYAHPAPLRV------GAHVLASACGVQQGDPLGPLLFS 724          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: UPI0018D0791B (uncharacterized protein LOC105386209 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D0791B)

HSP 1 Score: 68.6 bits (166), Expect = 7.340e-11
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATLGF--EEGCS---IFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G+V+RR++  + CR   + ++ YFQP  Q G     G E  A+ AT  F    G S   I   D  N FN++ R   L  + E IP + P+    Y+R S  L F     G  ++ES  GVQQG  LGPL +S
Sbjct:   26 RPIAVGNVIRRLVAKLGCRAVRQGMSSYFQP-RQLGFGVPLGCE-AAIHATRSFALSRGNSDDVIVKVDIRNAFNTVERDTVLSKVLEKIPYLYPFLHQCYSRPS-NLFF-----GDSLMESRVGVQQGDPLGPLLFS 155          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A813L8P4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L8P4_POLGL)

HSP 1 Score: 66.6 bits (161), Expect = 3.480e-10
Identity = 46/138 (33.33%), Postives = 66/138 (47.83%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATL-----GFEEGCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G+VLRR++G   C     +   +F P  Q GVA   GI+    +A         +   ++   D AN FN + R + L       PS+  ++   Y+R S KL+F     G   + S  GVQQG  LGPL +S
Sbjct:    9 RPIAIGEVLRRIVGKCLCASVKEEAKRFFHP-SQVGVACPAGIDAAVHSARAWKNRSAADTSKALLKLDFANAFNCVSRSQVLEQTRRHFPSLARWSQWCYSRPS-KLVF-----GSYTISSETGVQQGDPLGPLLFS 139          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A813GWS5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GWS5_POLGL)

HSP 1 Score: 66.6 bits (161), Expect = 3.780e-10
Identity = 46/138 (33.33%), Postives = 66/138 (47.83%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATL-----GFEEGCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G+VLRR++G   C     +   +F P  Q GVA   GI+    +A         +   ++   D AN FN + R + L       PS+  ++   Y+R S KL+F     G   + S  GVQQG  LGPL +S
Sbjct: 1453 RPIAVGEVLRRIVGKCLCASVKEEAKRFFHP-SQVGVACPAGIDAAVHSARAWKNRSAADTSKALLKLDFANAFNCVSRSQVLEQTRRHFPSLARWSQWCYSRPS-KLVF-----GSYAISSETGVQQGDPLGPLLFS 1583          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A813HER3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HER3_POLGL)

HSP 1 Score: 65.5 bits (158), Expect = 8.850e-10
Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTATL-----GFEEGCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RP+A G+VLRR++G   C     +   +F P  Q GVA   GI+    +A         +   ++   D AN F+ + R + L       PS+  ++   Y+R S KL+F     G   + S  GVQQG  LGPL +S
Sbjct:  149 RPIAIGEVLRRIVGKCLCASVKEEAKRFFHP-SQVGVACPTGIDAAVRSARAWKNRSATDTSKALLKLDFANAFHCVSRSQVLEQTRRHFPSLARWSQWCYSRPS-KLVF-----GSYTISSETGVQQGDPLGPLLFS 279          
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Match: A0A2E0Z6G4_9CHLR (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0Z6G4_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 9.660e-10
Identity = 48/136 (35.29%), Postives = 60/136 (44.12%), Query Frame = 1
Query:    1 RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIE---IMALTATLGFEEGCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYS 399
            RPVA GDVLRR+ G +  +        +F    Q GVA   G +   I           G  IF  D  N FN+  R   L  +A   P++ PYA   Y   +  L F     G   + S  GVQQGC LGPL +S
Sbjct: 2071 RPVASGDVLRRLAGRLLSKSVAPYARNFFLARKQVGVAVEGGADAAIIACRDVARTLPAGHVIFKVDQRNAFNAGSRAAILDLVARDFPTLYPYARMAYGGHT-WLYF-----GSHRIISQAGVQQGCPLGPLFFS 2200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50938.12351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN9.450e-4356.39Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A5J4YT00_PORPP2.290e-1134.81Retrotransposable element n=1 Tax=Porphyridium pur... [more]
A0A5J4Z8D0_PORPP2.900e-1134.81Retrotransposable element n=2 Tax=Porphyridium pur... [more]
A0A5J4YHT1_PORPP3.000e-1134.81RNA-directed DNA polymerase from mobile element jo... [more]
A0A5J4YQP2_PORPP3.070e-1134.81Retrotransposable element n=3 Tax=Porphyridium pur... [more]
UPI0018D0791B7.340e-1137.68uncharacterized protein LOC105386209 n=1 Tax=Plute... [more]
A0A813L8P4_POLGL3.480e-1033.33Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813GWS5_POLGL3.780e-1033.33Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813HER3_POLGL8.850e-1032.61Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A2E0Z6G4_9CHLR9.660e-1035.29Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50938contigH-elongata_contig50938:1244..1642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue8.9e-10
Seed eggNOG ortholog400682.PAC_15702057
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.4295752-CDS-H-elongata_contig50938:1243..16421622930835.4295752-CDS-H-elongata_contig50938:1243..1642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50938 1244..1642 +
1691679590.9345613-CDS-H-elongata_contig50938:1243..16421691679590.9345613-CDS-H-elongata_contig50938:1243..1642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50938 1244..1642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50938.12351.1prot_H-elongata_contig50938.12351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50938 1244..1642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50938.12351.1

>prot_H-elongata_contig50938.12351.1 ID=prot_H-elongata_contig50938.12351.1|Name=mRNA_H-elongata_contig50938.12351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
RPVACGDVLRRVIGAVFCRRYGRKLAEYFQPWGQDGVAESDGIEIMALTA
TLGFEEGCSIFSYDGANTFNSMHRHRFLPALAELIPSVVPYAASLYARES
PKLLFALDGGGVEVVESARGVQQGCNLGPLCYS
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mRNA from alignment at H-elongata_contig50938:1244..1642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50938.12351.1 ID=mRNA_H-elongata_contig50938.12351.1|Name=mRNA_H-elongata_contig50938.12351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig50938:1244..1642+ (Himanthalia elongata Himel1 dioecious)
AGGCCGGTCGCGTGTGGTGACGTCCTCCGAAGAGTTATTGGAGCCGTTTT CTGCCGCAGATACGGCAGAAAACTTGCAGAGTACTTCCAGCCTTGGGGCC AGGATGGTGTTGCAGAGTCTGACGGGATAGAGATCATGGCCCTAACAGCC ACACTGGGTTTCGAAGAGGGCTGCTCTATCTTCTCCTACGACGGGGCCAA CACCTTCAACAGCATGCACCGTCACAGATTTCTGCCAGCGCTAGCGGAAC TTATCCCTTCAGTGGTTCCTTACGCGGCAAGCTTATACGCCCGAGAATCA CCTAAACTATTGTTTGCGCTAGATGGCGGAGGGGTAGAAGTGGTTGAGTC TGCGCGGGGCGTACAGCAAGGCTGCAACCTGGGCCCTCTTTGCTATAGC
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Coding sequence (CDS) from alignment at H-elongata_contig50938:1244..1642+

>mRNA_H-elongata_contig50938.12351.1 ID=mRNA_H-elongata_contig50938.12351.1|Name=mRNA_H-elongata_contig50938.12351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig50938:1244..1642+ (Himanthalia elongata Himel1 dioecious)
AGGCCGGTCGCGTGTGGTGACGTCCTCCGAAGAGTTATTGGAGCCGTTTT
CTGCCGCAGATACGGCAGAAAACTTGCAGAGTACTTCCAGCCTTGGGGCC
AGGATGGTGTTGCAGAGTCTGACGGGATAGAGATCATGGCCCTAACAGCC
ACACTGGGTTTCGAAGAGGGCTGCTCTATCTTCTCCTACGACGGGGCCAA
CACCTTCAACAGCATGCACCGTCACAGATTTCTGCCAGCGCTAGCGGAAC
TTATCCCTTCAGTGGTTCCTTACGCGGCAAGCTTATACGCCCGAGAATCA
CCTAAACTATTGTTTGCGCTAGATGGCGGAGGGGTAGAAGTGGTTGAGTC
TGCGCGGGGCGTACAGCAAGGCTGCAACCTGGGCCCTCTTTGCTATAGCA
GGCCGGTCGCGTGTGGTGACGTCCTCCGAAGAGTTATTGGAGCCGTTTTC
TGCCGCAGATACGGCAGAAAACTTGCAGAGTACTTCCAGCCTTGGGGCCA
GGATGGTGTTGCAGAGTCTGACGGGATAGAGATCATGGCCCTAACAGCCA
CACTGGGTTTCGAAGAGGGCTGCTCTATCTTCTCCTACGACGGGGCCAAC
ACCTTCAACAGCATGCACCGTCACAGATTTCTGCCAGCGCTAGCGGAACT
TATCCCTTCAGTGGTTCCTTACGCGGCAAGCTTATACGCCCGAGAATCAC
CTAAACTATTGTTTGCGCTAGATGGCGGAGGGGTAGAAGTGGTTGAGTCT
GCGCGGGGCGTACAGCAAGGCTGCAACCTGGGCCCTCTTTGCTATAGC
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