mRNA_H-elongata_contig50884.12350.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: D7G4N4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4N4_ECTSI) HSP 1 Score: 273 bits (698), Expect = 1.200e-86 Identity = 126/176 (71.59%), Postives = 151/176 (85.80%), Query Frame = 1
Query: 1 QVLSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRLGDAAMTSKVMKAFEAGLRPSESLARCRIARNSSQIPYKMMDSNDPRRKKARDRQRSIERIRIKKSAWI 528
+V+ N +P+HDV+VTNPPFSG+H+P IL+FCAR+GAKPWFLLLPN+VYLKDYYE SL SG+G PFYLTPPKRYM+YSPQGSRL +KSSERKTSPFNTFWYI LGD A+TSK++++++A R + ARC +AR + QIPYKMMDSNDPRRKKARDRQRSI+RIR KK+ WI
Sbjct: 368 EVVKNGNIPQHDVVVTNPPFSGEHMPKILKFCARQGAKPWFLLLPNYVYLKDYYEPSLGRRSGQGATRPFYLTPPKRYMYYSPQGSRLKVKSSERKTSPFNTFWYIHLGDCAVTSKILQSYDAASRKLDINARCCVARTTQQIPYKMMDSNDPRRKKARDRQRSIDRIRKKKNEWI 543
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A835YHP0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHP0_9STRA) HSP 1 Score: 143 bits (360), Expect = 4.470e-38 Identity = 79/168 (47.02%), Postives = 106/168 (63.10%), Query Frame = 1
Query: 1 QVLSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRLGDAAMTSKVMKAFEAGLRPSESLARCRIARNSSQIPYKMMDSNDPRRKKARDRQRSIERI 504
+V+ +VP+HD LVTNPP+SGDHV +LR C +PW LLLPN+VY K++Y LT+ S ++TPPKRY +Y +SSERKTSPF TFWYI LG T + A++A RC +AR +S +PY+ MDS+DP RK+ RDR+RS +R+
Sbjct: 189 RVIEEGRVPKHDALVTNPPYSGDHVERLLRHCVS-SKRPWLLLLPNYVYTKEFYRQ-LTAASKTA----VFITPPKRYHYYR--------QSSERKTSPFITFWYIDLGPKH-TQAALAAWQAAQARLPESERCCLARAASALPYRCMDSSDPLRKRERDRRRSKQRL 341
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A7S3XRY6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRY6_HETAK) HSP 1 Score: 134 bits (337), Expect = 2.300e-35 Identity = 72/161 (44.72%), Postives = 98/161 (60.87%), Query Frame = 1
Query: 7 LSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRLGDAAMTSKVMKAFEAGLRPSESLAR---CRIARNSSQIPYKMMDSNDPRRKKARD 480
+ + P+ DVLVTNPP+SGDH+ IL+FC KPWFLL+PN+VY+K+YY + LT P Y+TP KRY +YSP+ SR ++KSSERKTSPF +FWY L A + F A P+ +AR Q+P + +D NDP +++ RD
Sbjct: 125 VDSKSTPDFDVLVTNPPYSGDHIERILKFCIA-SKKPWFLLVPNWVYMKEYYMN-LTKN-----IKPIYITPAKRYSYYSPRVSRTNVKSSERKTSPFPSFWYADL--TARHGRAAAVFLANQTPTRGGGEGGGAHLARGPRQLPERYLDQNDPAKRRLRD 276
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A7S4D5V1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5V1_HETAK) HSP 1 Score: 134 bits (337), Expect = 1.110e-34 Identity = 72/161 (44.72%), Postives = 98/161 (60.87%), Query Frame = 1
Query: 7 LSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRLGDAAMTSKVMKAFEAGLRPSESLAR---CRIARNSSQIPYKMMDSNDPRRKKARD 480
+ + P+ DVLVTNPP+SGDH+ IL+FC KPWFLL+PN+VY+K+YY + LT P Y+TP KRY +YSP+ SR ++KSSERKTSPF +FWY L A + F A P+ +AR Q+P + +D NDP +++ RD
Sbjct: 200 VDSKSTPDFDVLVTNPPYSGDHIERILKFCIA-SKKPWFLLVPNWVYMKEYYMN-LTKN-----IKPIYITPAKRYSYYSPRVSRTNVKSSERKTSPFPSFWYADL--TARHGRAAAVFLANQTPTRGGGEGGGAHLARGPRQLPERYLDQNDPAKRRLRD 351
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A7S4P7Q6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P7Q6_GUITH) HSP 1 Score: 116 bits (290), Expect = 4.460e-27 Identity = 66/161 (40.99%), Postives = 100/161 (62.11%), Query Frame = 1
Query: 1 QVLSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQ---GSRLSI-KSSERKTSPFNTFWYIRLGDAAMTSKVMKAFEAGLRPSESLARCRIARNSSQIPYKMMDSNDPRRKK 471
+++ + ++PEHD++VTNPP+S DH+P LR+ + KPW LL+PN+VY KDY+ SSL GR LP +LTPP RY++ SP+ ++ I KS E KT+P+ +FWY+ ++V + A ++ CR+ +N Q+P M DS DP RK+
Sbjct: 348 EMVKSKRIPEHDMVVTNPPYSLDHIPRFLRWLSVND-KPWLLLVPNYVYTKDYFSSSLR---GR---LPMFLTPPGRYVYESPKHVANAQGQIRKSGEHKTAPYVSFWYVETRPIIQPNQVHTWWMAEKMFDKT--NCRLCKNVEQLPANMRDSFDPLRKR 499
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: L1JYH6_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYH6_GUITC) HSP 1 Score: 103 bits (257), Expect = 8.500e-25 Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 1 QVLSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQGSRLSIKSSERKTSPFNTFWYI 318
+ + P DVLVTNPP+S DH+ + FC+ KPW +L+PN+VY KDYYE L SG PFY+ PP RY + SP G+R S E+KTSPF +FW+I
Sbjct: 70 EAVKQGTTPPFDVLVTNPPYSNDHIERLFSFCSSC-EKPWMVLVPNYVYTKDYYEKMLKSG-----VRPFYVIPPNRYEYISPAGAR---GSREKKTSPFVSFWFI 166
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A6B2LC48_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LC48_9EUKA) HSP 1 Score: 104 bits (260), Expect = 5.670e-24 Identity = 62/179 (34.64%), Postives = 96/179 (53.63%), Query Frame = 1
Query: 4 VLSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRLGDAAMTSKVMKAFEAGLRPSESLARCRIARNSSQIPYKMMDS-NDPRRKKARD-RQRSIERIRIKKSAWIAP 534
V +++P+ DV++TNPP+S DH+ L FC KPWFLL+PNFVY K+YY+ TS P ++ P RY + +P+G K++++KTSPF +FWY+ D + + E CR+ R +P ++D NDP KK R+ ++R+ ++R K P
Sbjct: 127 VQKANKLPDFDVIITNPPYSTDHIQQCLHFCIS-SKKPWFLLVPNFVYSKEYYKYECTSLLDP----PCFVVPEVRYQYVTPKGYHQ--KNNKKKTSPFPSFWYVGAVDGHLLDRY-----------EGSKECRLVREEKDLPAPVLDKMNDPLGKKIRNAKKRNKSKLRKKNKQTETP 287
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A7S3UG22_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UG22_9CHLO) HSP 1 Score: 105 bits (263), Expect = 7.430e-24 Identity = 61/172 (35.47%), Postives = 99/172 (57.56%), Query Frame = 1
Query: 7 LSNDQVPEHDVLVTNPPFSG---DHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTS-GSGRGPALPFYLTP--PKRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRLGDAAMTSKVMKAFEAGLRPSESLARCRIARNSSQIPYKMMDSNDP--RRKKARDRQRSIE 498
L ++PE+D +VTNPP+S DHV +++ F + KPWF+L PN+VY+KDY+E+ S PF+LTP P++Y++ +P+ R +KS R T+P+ TFWY +G+ + + +G S +L+ +A + +P DS+D R+KK + R+R E
Sbjct: 208 LERKELPEYDCIVTNPPYSTAPLDHVKALMEFLMTKQDKPWFVLQPNYVYMKDYWETYCRKLASTADDPRPFFLTPTFPRKYVYKAPKALRQDLKSKARNTAPYVTFWYCWVGNPLLKRFMKWWHGSGQSVSSALS---LAVSERSLPNNFKDSSDRTRRKKKGKKRKRPAE 376
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A7S1IGA0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IGA0_9EUGL) HSP 1 Score: 104 bits (260), Expect = 7.470e-24 Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 7 LSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPPKRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRLG 327
+ N QVPEHD+L+TNPP+SGDH IL +C G KPW LLLPN++ K+YY+S+L PFY +RYMFY P+G+ TSPF FW++ LG
Sbjct: 164 VKNGQVPEHDILITNPPYSGDHKERILEYCCASG-KPWALLLPNYIATKNYYQSTLAKHKQE----PFYFVSRERYMFYHPEGTG-------HDTSPFEGFWFLYLG 258
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Match: A0A7S3GZA9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZA9_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.750e-23 Identity = 49/109 (44.95%), Postives = 74/109 (67.89%), Query Frame = 1
Query: 7 LSNDQVPEHDVLVTNPPFSGDHVPSILRFC-ARRGAKPWFLLLPNFVYLKDYYESSLTSGSGRGPALPFYLTPP--KRYMFYSPQGSRLSIKSSERKTSPFNTFWYIRL 324
++ + VP++DVL+TNPP+SG H+ +L++C G +PWFLLLPN+VY KDYY +G + PFY+TP +RY++ +P+G R + S + TSPF TFWY ++
Sbjct: 109 ITTNTVPDYDVLITNPPYSGTHMERLLQYCNENNGTRPWFLLLPNYVYTKDYYAPIFERN--KGGSKPFYVTPANGRRYLYTTPKGRRQ--EKSGKFTSPFPTFWYCQI 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50884.12350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50884.12350.1 >prot_H-elongata_contig50884.12350.1 ID=prot_H-elongata_contig50884.12350.1|Name=mRNA_H-elongata_contig50884.12350.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp QVLSNDQVPEHDVLVTNPPFSGDHVPSILRFCARRGAKPWFLLLPNFVYLback to top mRNA from alignment at H-elongata_contig50884:1996..3802- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50884.12350.1 ID=mRNA_H-elongata_contig50884.12350.1|Name=mRNA_H-elongata_contig50884.12350.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1807bp|location=Sequence derived from alignment at H-elongata_contig50884:1996..3802- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50884:1996..3802- >mRNA_H-elongata_contig50884.12350.1 ID=mRNA_H-elongata_contig50884.12350.1|Name=mRNA_H-elongata_contig50884.12350.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig50884:1996..3802- (Himanthalia elongata Himel1 dioecious)back to top |