mRNA_H-elongata_contig5079.12332.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5079.12332.1
Unique NamemRNA_H-elongata_contig5079.12332.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A089N0W8_PETFA (Ribosomal protein S2 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N0W8_PETFA)

HSP 1 Score: 86.7 bits (213), Expect = 9.130e-20
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   19 LQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            +  IKWKRG+L+KS E DLVFL  V KEN VEAHRKCL++VGVGSCT+S++SYP
Sbjct:   94 INCIKWKRGTLAKSKEADLVFLDGVEKENLVEAHRKCLLLVGVGSCTMSKVSYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A0U1XC74_SCYLO (Ribosomal protein S2 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XC74_SCYLO)

HSP 1 Score: 85.1 bits (209), Expect = 3.470e-19
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 YSDTKSLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            ++  +++  IKWKRGSL+KS +VDLVFL  V KEN VEAHRKCL++VGVGS T+S+ISYP
Sbjct:   88 FAKEQNINCIKWKRGSLAKSKDVDLVFLDGVEKENLVEAHRKCLLLVGVGSPTMSKISYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A3G5FPL4_9PHAE (Ribosomal protein S2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPL4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.450e-19
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   16 SLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            +L  IKWKRGSL+KS   DLVFLS V KEN VEAHRKCL++VG+GS T+S+ISYP
Sbjct:   93 NLNCIKWKRGSLAKSKNADLVFLSGVEKENLVEAHRKCLLLVGIGSSTMSKISYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A4D6E513_9PHAE (Ribosomal protein S2 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E513_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.840e-19
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    4 SDTKSLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            S+  ++  IKWKR  LSKS +VDLVFLSD+ KEN VEAHRKCL++VGVGS T+S+ISYP
Sbjct:   89 SNESNISYIKWKRSYLSKSKDVDLVFLSDIEKENLVEAHRKCLLLVGVGSPTMSKISYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: Q94Z20_PYLLI (Ribosomal protein S2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z20_PYLLI)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-18
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   16 SLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            ++  +KWKRGSLSKS +VDLVFLS VN+EN VEAHRKCL++ GVGS T+S+I+YP
Sbjct:   93 NINYLKWKRGSLSKSQDVDLVFLSGVNRENLVEAHRKCLLLSGVGSSTMSKIAYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A8F0K1K1_9PHAE (Ribosomal protein S2 n=1 Tax=Lessonia variegata TaxID=549686 RepID=A0A8F0K1K1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.910e-18
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 YSDTKSLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            +S T ++  IKWKR  L KS +VDLVFL+D+ KEN VEAHRKCL++VGVGS T+S++SYP
Sbjct:   88 FSHTANISYIKWKRSYLVKSKDVDLVFLTDIEKENLVEAHRKCLLLVGVGSPTMSKVSYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A1I9LW48_9PHAE (Ribosomal protein S2 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW48_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.240e-18
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 YSDTKSLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            +S   ++  IKWKRGS+ KS   DLVFLS++NKEN VEAHRKCL++VG+GS T+S+I+YP
Sbjct:   88 FSRDPNIDCIKWKRGSILKSKNADLVFLSNINKENMVEAHRKCLLLVGLGSPTMSKIAYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A516ICG2_9PHAE (Ribosomal protein S2 n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICG2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.780e-18
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 YSDTKSLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            +S T ++  IKWKR  L KS +VDLVFLS++ KEN VEAHRKCL+++G+GS T+S+ISYP
Sbjct:   88 FSHTPNISYIKWKRSYLIKSKDVDLVFLSNIEKENLVEAHRKCLLLIGIGSPTMSKISYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A8F0FCA4_9PHAE (Ribosomal protein S2 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FCA4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.000e-18
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   16 SLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            ++  IKWKRG L+KS +VDLV LSD+ KEN VEAHRKCL++VGVGS T+S++SYP
Sbjct:   93 NINYIKWKRGYLAKSKDVDLVVLSDIEKENIVEAHRKCLLLVGVGSFTMSKVSYP 147          
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Match: A0A8F0FDQ0_9PHAE (Ribosomal protein S2 n=9 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FDQ0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.000e-18
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   16 SLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVGSCTLSQISYP 180
            ++  IKWKR  L+KS +VDLVFLSD+ KEN VEAHRKCL++VGVGS T+S++SYP
Sbjct:   93 NISYIKWKRSYLAKSKDVDLVFLSDIEKENLVEAHRKCLLLVGVGSPTMSKVSYP 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5079.12332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A089N0W8_PETFA9.130e-2070.37Ribosomal protein S2 n=1 Tax=Petalonia fascia TaxI... [more]
A0A0U1XC74_SCYLO3.470e-1965.00Ribosomal protein S2 n=1 Tax=Scytosiphon lomentari... [more]
A0A3G5FPL4_9PHAE5.450e-1970.91Ribosomal protein S2 n=1 Tax=Cladosiphon okamuranu... [more]
A0A4D6E513_9PHAE7.840e-1967.80Ribosomal protein S2 n=2 Tax=Laminariaceae TaxID=3... [more]
Q94Z20_PYLLI1.200e-1869.09Ribosomal protein S2 n=1 Tax=Pylaiella littoralis ... [more]
A0A8F0K1K1_9PHAE1.910e-1863.33Ribosomal protein S2 n=1 Tax=Lessonia variegata Ta... [more]
A0A1I9LW48_9PHAE3.240e-1861.67Ribosomal protein S2 n=2 Tax=Pleurocladia lacustri... [more]
A0A516ICG2_9PHAE5.780e-1861.67Ribosomal protein S2 n=2 Tax=Lessonia TaxID=105411... [more]
A0A8F0FCA4_9PHAE6.000e-1867.27Ribosomal protein S2 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0FDQ0_9PHAE6.000e-1867.27Ribosomal protein S2 n=9 Tax=Alariaceae TaxID=2887... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5079contigH-elongata_contig5079:9982..10161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog description30S ribosomal protein S8
Ec32 orthologEc-14_000060.1
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930833.499136-CDS-H-elongata_contig5079:9981..101611622930833.499136-CDS-H-elongata_contig5079:9981..10161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5079 9982..10161 +
1691679590.147954-CDS-H-elongata_contig5079:9981..101611691679590.147954-CDS-H-elongata_contig5079:9981..10161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5079 9982..10161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5079.12332.1prot_H-elongata_contig5079.12332.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5079 9982..10161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5079.12332.1

>prot_H-elongata_contig5079.12332.1 ID=prot_H-elongata_contig5079.12332.1|Name=mRNA_H-elongata_contig5079.12332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
YSDTKSLQAIKWKRGSLSKSNEVDLVFLSDVNKENFVEAHRKCLVIVGVG
SCTLSQISYP
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mRNA from alignment at H-elongata_contig5079:9982..10161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5079.12332.1 ID=mRNA_H-elongata_contig5079.12332.1|Name=mRNA_H-elongata_contig5079.12332.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig5079:9982..10161+ (Himanthalia elongata Himel1 dioecious)
TATTCTGATACAAAAAGTTTACAAGCTATTAAATGGAAAAGAGGGAGTTT GTCAAAATCTAACGAAGTAGATTTAGTGTTTTTAAGTGATGTTAATAAAG AAAATTTTGTGGAGGCTCACAGAAAGTGTTTGGTTATTGTTGGGGTGGGA AGTTGTACTTTAAGTCAGATATCTTACCCC
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Coding sequence (CDS) from alignment at H-elongata_contig5079:9982..10161+

>mRNA_H-elongata_contig5079.12332.1 ID=mRNA_H-elongata_contig5079.12332.1|Name=mRNA_H-elongata_contig5079.12332.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig5079:9982..10161+ (Himanthalia elongata Himel1 dioecious)
TATTCTGATACAAAAAGTTTACAAGCTATTAAATGGAAAAGAGGGAGTTT
GTCAAAATCTAACGAAGTAGATTTAGTGTTTTTAAGTGATGTTAATAAAG
AAAATTTTGTGGAGGCTCACAGAAAGTGTTTGGTTATTGTTGGGGTGGGA
AGTTGTACTTTAAGTCAGATATCTTACCCCTATTCTGATACAAAAAGTTT
ACAAGCTATTAAATGGAAAAGAGGGAGTTTGTCAAAATCTAACGAAGTAG
ATTTAGTGTTTTTAAGTGATGTTAATAAAGAAAATTTTGTGGAGGCTCAC
AGAAAGTGTTTGGTTATTGTTGGGGTGGGAAGTTGTACTTTAAGTCAGAT
ATCTTACCCC
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