mRNA_H-elongata_contig50733.12322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50733.12322.1
Unique NamemRNA_H-elongata_contig50733.12322.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50733.12322.1 vs. uniprot
Match: A0A6H5L2H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H8_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 4.270e-125
Identity = 195/310 (62.90%), Postives = 230/310 (74.19%), Query Frame = 1 
Query:    1 MTRKRQLVKEVQEHLAIGEALYWESRVDLVQSGG-----KQGTPRRSRRGEARRRYEDVAGLRRQHQKMAVNLPPMISTREGKLLAAEVFGDGVLKHLPSEDKGPRVGHCSSGYVCGHPVSRGKEGNRWCQTPVRASLESKMACKHHSHRRRGAGS-PSKEQKRFMLLAVEFYD-QKKVISWSRVVSHIRSRALPSELRQRRQVLAVGGRALAVSDAKIVLHGFVQCTLFWLAACRLTRRGYRFSTMAHASKAEFKDFLADLRATAAVPLLTQVSSPFVCVDDMSDGVR--------FYVSGYDQVCRVF 885
            MTRKR+L+++    +A+G   YWE  +DL   GG     K+GTPRRSRRG+ARR+++D A +  +  KM VNLPPM+STREGKLL+ EVFG GVL HL  ED+G RVGHCSSGYVCG PVSRGKEGNRWCQTPVR SLES+MAC HHSHRRR  G+ PSKEQ R+M+LA EF+D Q   I W RVVS++R+R  P EL QRRQVL  G RALAV+D +IVLHGFVQC  FWLAACRLTRRGY F  +AHASK +FK+FL+ LR  AA P  +  SSPFVC+DD   G R        +Y SGYDQVC +F
Sbjct:   80 MTRKRRLLQDTAARIAVGVVPYWEGGIDL---GGDIDEEKKGTPRRSRRGKARRKHQDSAPI--EQPKMGVNLPPMVSTREGKLLSVEVFGIGVLDHLRREDRGARVGHCSSGYVCGSPVSRGKEGNRWCQTPVRGSLESRMACMHHSHRRRAGGAGPSKEQLRYMMLADEFFDRQSGDICWQRVVSYLRARKSPRELAQRRQVLTAGDRALAVADTQIVLHGFVQCLFFWLAACRLTRRGYEFKMVAHASKGDFKEFLSRLRRKAAWPPPSPASSPFVCMDDKRSGKRQRQMQHPSYYASGYDQVCGMF 384
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BLAST of mRNA_H-elongata_contig50733.12322.1 vs. uniprot
Match: D7G151_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G151_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 9.180e-125
Identity = 194/305 (63.61%), Postives = 228/305 (74.75%), Query Frame = 1 
Query:    1 MTRKRQLVKEVQEHLAIGEALYWESRVDLVQSGG-----KQGTPRRSRRGEARRRYEDVAGLRRQHQKMAVNLPPMISTREGKLLAAEVFGDGVLKHLPSEDKGPRVGHCSSGYVCGHPVSRGKEGNRWCQTPVRASLESKMACKHHSHRRRGAGS-PSKEQKRFMLLAVEFYD-QKKVISWSRVVSHIRSRALPSELRQRRQVLAVGGRALAVSDAKIVLHGFVQCTLFWLAACRLTRRGYRFSTMAHASKAEFKDFLADLRATAAVPLLTQVSSPFVCVDDMSDGVR--------FYVSGYDQ 870
            MTRKR+L++E +  +A+G   YWE  VDL   GG     K+GTPRRSRRG+ARR+ +D A +  +  KM VNLPPM+STREGKLL+ EVFG GVL HL  ED+G RVGHCSSGYVCG PV RGKEGNRWCQTPVR SLES+MAC HHSHRRR  G+ PSKEQ R+M+LA +FYD Q   I W RVVS++R+R  P EL QRRQVL  GGRA+AV+D KIVLHGFVQC  FWLAACRLTRRGY F+ +AHASK++FK+FL+ LR  AA P  +  SSPFVC+DD   G R        +Y SGYDQ
Sbjct:    1 MTRKRRLLQETEARIAVGVVPYWEGGVDL---GGDIDQEKKGTPRRSRRGKARRKQQDPAPI--EQPKMGVNLPPMVSTREGKLLSVEVFGIGVLDHLRREDRGARVGHCSSGYVCGSPVPRGKEGNRWCQTPVRGSLESRMACMHHSHRRRAGGTGPSKEQLRYMMLADDFYDRQSGDICWQRVVSYLRARKCPRELAQRRQVLTAGGRAVAVADTKIVLHGFVQCLFFWLAACRLTRRGYEFTMVAHASKSDFKEFLSRLRRKAAWPPPSPASSPFVCMDDKRSGKRQRQMQHPSYYASGYDQ 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50733.12322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2H8_9PHAE4.270e-12562.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G151_ECTSI9.180e-12563.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50733contigH-elongata_contig50733:720..3173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_005290.1
Exons6
Model size888
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50733.12322.1prot_H-elongata_contig50733.12322.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50733 720..3173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.7118452-CDS-H-elongata_contig50733:719..8521622930832.7118452-CDS-H-elongata_contig50733:719..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 720..852 +
1691679589.8325229-CDS-H-elongata_contig50733:719..8521691679589.8325229-CDS-H-elongata_contig50733:719..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 720..852 +
1622930832.7301414-CDS-H-elongata_contig50733:1160..12761622930832.7301414-CDS-H-elongata_contig50733:1160..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 1161..1276 +
1691679589.840445-CDS-H-elongata_contig50733:1160..12761691679589.840445-CDS-H-elongata_contig50733:1160..1276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 1161..1276 +
1622930832.7469084-CDS-H-elongata_contig50733:1555..16411622930832.7469084-CDS-H-elongata_contig50733:1555..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 1556..1641 +
1691679589.847918-CDS-H-elongata_contig50733:1555..16411691679589.847918-CDS-H-elongata_contig50733:1555..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 1556..1641 +
1622930832.7662077-CDS-H-elongata_contig50733:2009..21641622930832.7662077-CDS-H-elongata_contig50733:2009..2164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 2010..2164 +
1691679589.8554306-CDS-H-elongata_contig50733:2009..21641691679589.8554306-CDS-H-elongata_contig50733:2009..2164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 2010..2164 +
1622930832.7808805-CDS-H-elongata_contig50733:2348..25591622930832.7808805-CDS-H-elongata_contig50733:2348..2559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 2349..2559 +
1691679589.8627944-CDS-H-elongata_contig50733:2348..25591691679589.8627944-CDS-H-elongata_contig50733:2348..2559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 2349..2559 +
1622930832.8002002-CDS-H-elongata_contig50733:2986..31731622930832.8002002-CDS-H-elongata_contig50733:2986..3173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 2987..3173 +
1691679589.8731773-CDS-H-elongata_contig50733:2986..31731691679589.8731773-CDS-H-elongata_contig50733:2986..3173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50733 2987..3173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50733.12322.1

>prot_H-elongata_contig50733.12322.1 ID=prot_H-elongata_contig50733.12322.1|Name=mRNA_H-elongata_contig50733.12322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp
MTRKRQLVKEVQEHLAIGEALYWESRVDLVQSGGKQGTPRRSRRGEARRR
YEDVAGLRRQHQKMAVNLPPMISTREGKLLAAEVFGDGVLKHLPSEDKGP
RVGHCSSGYVCGHPVSRGKEGNRWCQTPVRASLESKMACKHHSHRRRGAG
SPSKEQKRFMLLAVEFYDQKKVISWSRVVSHIRSRALPSELRQRRQVLAV
GGRALAVSDAKIVLHGFVQCTLFWLAACRLTRRGYRFSTMAHASKAEFKD
FLADLRATAAVPLLTQVSSPFVCVDDMSDGVRFYVSGYDQVCRVF*
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mRNA from alignment at H-elongata_contig50733:720..3173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50733.12322.1 ID=mRNA_H-elongata_contig50733.12322.1|Name=mRNA_H-elongata_contig50733.12322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2454bp|location=Sequence derived from alignment at H-elongata_contig50733:720..3173+ (Himanthalia elongata Himel1 dioecious)
ATGACTCGGAAGAGGCAGCTAGTCAAAGAGGTGCAGGAGCATCTGGCGAT
AGGTGAAGCACTTTACTGGGAGAGCCGAGTCGACTTGGTGCAGTCCGGGG
GAAAACAGGGGACGCCAAGGAGATCCCGCCGAGGTATGACCTGAAGAAAA
TATTAAACGCAAACTTCGAACCTCGAGTCTTTTGCGCCGCCCGTAGCATG
AAAGTTGCGTCGATTTTATTGTATCCATGTTTTCCTCCGGCTTCGCTTTG
AAAAGGGTGCATGCAACCGACATGGGTTTCGAAGCGTTTTCGGGGAGTCT
CCCCAAGCACCCCATGCTCGAAAGATACAATCTATTTCGGACAAGATGTA
CTTAGTCCTTGGCGGGAGCTCGTACCCAGTCAGTATCTCGTTTACTCTCT
CCGGTATTGAGTCCGCGATGGCGTTGCTTTGATGTGCAAAGGCGAGGCCC
GCCGCAGGTACGAGGATGTTGCGGGGCTAAGACGCCAGCACCAGAAAATG
GCGGTCAACCTCCCGCCGATGATCAGCACCAGAGAAGGAAAACTCTTGGC
TGCTGAGGTGAGCGTGCGCGCGCGAGCCATCCCGTTACGCACAGGTGAAA
CTTGGGTCTTGCGAAATCTTCATTTCAGCGTAGGCACCGTTCAGTATGTA
ACCGTATGATGTGCTGCCGCCAATAAATCGCGTTGCTGATGATGTTATAC
AGAAGGTATGCGTGTATTGTCGCAAGTACGTGGGGTGAGTCCAAAACCAG
CCTTCGCGCAAGAGAGCGCGTTCGTAAGAAGATCTGAAGGTCCGAAAGTG
AGAAACACTGGGCCCCTTCTCGCCTCCTTATCGCAGGTGTTCGGCGACGG
CGTTCTAAAACACCTCCCGTCAGAAGATAAGGGCCCTCGCGTCGGACACT
GCTCGAGCGGTTACGTTTGCGGGTGAGCCGTTGGCGGGACCTTGGCACTC
GATCATTCGACTTTGAAGCTAGTGTCCGTTTGTCGAATGTGAACGCGAAG
CGAGACTTTGGACTGAAGCGCCGTACACGAAACATGGGGCCTACCTCCTC
CGTGATTCATCGGGGCGCGGTATTTCGTTACGCTGCCGACTGGAATCGTT
GAAGGCGCCACCACTAAATTGATATTACTTTCAGTTAATCTTCTCGCGTG
TTTACCATCTGCGTTCAACCAAAAAAATTCCTCTGCGAGTGCCTCTAAAT
TAGATGGCCTTTATGCGCGATGATTCATTGTCAAATGGATCCGACCTGGC
GGTGCTTTGTCTTCCCTTGGTCTCTCGGCGTATTACGTAGCCACCCCGTG
TCACGCGGAAAAGAGGGGAATCGTTGGTGTCAAACCCCAGTGCGGGCGTC
CCTCGAGAGCAAGATGGCCTGCAAGCACCACAGCCACCGCAGGAGAGGAG
CTGGGAGCCCCTCGAAGGAGCAGAAGCGGTTCATGCTCTTGGCAGGTAAG
CACTTCCTGTATTTAGGACGGCTTTGTCGCGTACATGAGTGATATGATCT
GACGAGCACCAAGCGCAACTTACTCAAGCTTTTCTTGGTCCCCTCCGGAA
GCACGCGCCCTCTTTCTTAAACCATTCACCTTTGTGTGTGTGCTCAATAC
TAACCGAACAACTCTACGCGTGCGTTCAGTCGAGTTTTACGATCAGAAGA
AAGTCATTTCGTGGTCGCGGGTGGTATCCCACATCCGATCTCGGGCGTTA
CCGTCCGAGCTTCGTCAGCGCCGCCAGGTACTGGCCGTGGGCGGTCGCGC
CCTGGCAGTCAGCGACGCCAAGATCGTCCTCCACGGTTTCGTGCAGTGTA
CCCTCTTCTGGCTGGCAGCCTGCCGTTTGACCCGTCGCGGGTGAGGGGGG
ATCGCTCGACATGGTTCTGACCGCTCGTGGCTGTCGTCAATCGGAGCCGG
GTGGGGCGGGACGGGTTGTTGCATCTACTTAAGTGTTCAACATATAGGCA
GGATTCGTGGGGTGTACATAACACCCGCGGTGCACTCATAAATTATTTTA
GAGGATTGTACGACGACAGATTTATTTCGTTTTCCACGTTATACCCCCCC
CAAATCCCTCAATGCACCCCCCTCCCCGGCGTAAACATATTTTATAATGT
TCGTTATTAGGAATGCTTATTTTATTGAGTATGTTTTCTTCTTAGAGGCG
ATTTTCTTGACCCCCCACTTGCTTTCATAGTGCCAAAATATATACTCTGA
TATCCATAACGAAACCTTACTTCACTATCGATTATTGACCCCAAGAAAAC
CCGCATCAAAAACGTAGGTATCGCTTTTCCACGATGGCCCACGCTTCGAA
GGCCGAGTTCAAGGACTTCCTGGCGGATCTTCGAGCGACTGCAGCGGTGC
CTCTACTGACCCAGGTGTCTTCACCATTCGTGTGCGTCGACGACATGTCG
GACGGCGTGCGCTTTTATGTCAGCGGGTACGACCAAGTCTGTCGAGTTTT
CTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50733:720..3173+

>mRNA_H-elongata_contig50733.12322.1 ID=mRNA_H-elongata_contig50733.12322.1|Name=mRNA_H-elongata_contig50733.12322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig50733:720..3173+ (Himanthalia elongata Himel1 dioecious)
ATGACTCGGAAGAGGCAGCTAGTCAAAGAGGTGCAGGAGCATCTGGCGAT
AGGTGAAGCACTTTACTGGGAGAGCCGAGTCGACTTGGTGCAGTCCGGGG
GAAAACAGGGGACGCCAAGGAGATCCCGCCGAGATGACTCGGAAGAGGCA
GCTAGTCAAAGAGGTGCAGGAGCATCTGGCGATAGGTGAAGCACTTTACT
GGGAGAGCCGAGTCGACTTGGTGCAGTCCGGGGGAAAACAGGGGACGCCA
AGGAGATCCCGCCGAGGCGAGGCCCGCCGCAGGTACGAGGATGTTGCGGG
GCTAAGACGCCAGCACCAGAAAATGGCGGTCAACCTCCCGCCGATGATCA
GCACCAGAGAAGGAAAACTCTTGGCTGCTGAGGCGAGGCCCGCCGCAGGT
ACGAGGATGTTGCGGGGCTAAGACGCCAGCACCAGAAAATGGCGGTCAAC
CTCCCGCCGATGATCAGCACCAGAGAAGGAAAACTCTTGGCTGCTGAGGT
GTTCGGCGACGGCGTTCTAAAACACCTCCCGTCAGAAGATAAGGGCCCTC
GCGTCGGACACTGCTCGAGCGGTTACGTTTGCGGGTGTTCGGCGACGGCG
TTCTAAAACACCTCCCGTCAGAAGATAAGGGCCCTCGCGTCGGACACTGC
TCGAGCGGTTACGTTTGCGGCCACCCCGTGTCACGCGGAAAAGAGGGGAA
TCGTTGGTGTCAAACCCCAGTGCGGGCGTCCCTCGAGAGCAAGATGGCCT
GCAAGCACCACAGCCACCGCAGGAGAGGAGCTGGGAGCCCCTCGAAGGAG
CAGAAGCGGTTCATGCTCTTGGCAGCCACCCCGTGTCACGCGGAAAAGAG
GGGAATCGTTGGTGTCAAACCCCAGTGCGGGCGTCCCTCGAGAGCAAGAT
GGCCTGCAAGCACCACAGCCACCGCAGGAGAGGAGCTGGGAGCCCCTCGA
AGGAGCAGAAGCGGTTCATGCTCTTGGCAGTCGAGTTTTACGATCAGAAG
AAAGTCATTTCGTGGTCGCGGGTGGTATCCCACATCCGATCTCGGGCGTT
ACCGTCCGAGCTTCGTCAGCGCCGCCAGGTACTGGCCGTGGGCGGTCGCG
CCCTGGCAGTCAGCGACGCCAAGATCGTCCTCCACGGTTTCGTGCAGTGT
ACCCTCTTCTGGCTGGCAGCCTGCCGTTTGACCCGTCGCGGTCGAGTTTT
ACGATCAGAAGAAAGTCATTTCGTGGTCGCGGGTGGTATCCCACATCCGA
TCTCGGGCGTTACCGTCCGAGCTTCGTCAGCGCCGCCAGGTACTGGCCGT
GGGCGGTCGCGCCCTGGCAGTCAGCGACGCCAAGATCGTCCTCCACGGTT
TCGTGCAGTGTACCCTCTTCTGGCTGGCAGCCTGCCGTTTGACCCGTCGC
GGGTATCGCTTTTCCACGATGGCCCACGCTTCGAAGGCCGAGTTCAAGGA
CTTCCTGGCGGATCTTCGAGCGACTGCAGCGGTGCCTCTACTGACCCAGG
TGTCTTCACCATTCGTGTGCGTCGACGACATGTCGGACGGCGTGCGCTTT
TATGTCAGCGGGTACGACCAAGTCTGTCGAGTTTTCTGAGTATCGCTTTT
CCACGATGGCCCACGCTTCGAAGGCCGAGTTCAAGGACTTCCTGGCGGAT
CTTCGAGCGACTGCAGCGGTGCCTCTACTGACCCAGGTGTCTTCACCATT
CGTGTGCGTCGACGACATGTCGGACGGCGTGCGCTTTTATGTCAGCGGGT
ACGACCAAGTCTGTCGAGTTTTCTGA
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