mRNA_H-elongata_contig50639.12312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50639.12312.1
Unique NamemRNA_H-elongata_contig50639.12312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50639.12312.1 vs. uniprot
Match: D7FNL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL1_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.870e-42
Identity = 89/135 (65.93%), Postives = 107/135 (79.26%), Query Frame = 2 
Query:  176 SRVQAMKKTYGEKSAKAAQAFKALDASLAEFFDAMSSRSGRRLTSQLVVGSALTERLAVGGRRLADENSTSA---NENTTLVDITQFQLNLWTGVGLALIAFLAVYATINMDVQPDSLLYAKFIADTSGGGLKTD 571
            S ++A+  +YG +S KA  A KALDA+L E F+AMS+ +GRRLTSQL+VG AL+++LAVGGRRL  +           TTLV+ITQFQLN+WTGVGLAL+ FLA+YAT NMDVQPDSLLYAKFI DTSGGGLKTD
Sbjct:  269 SSLKAINTSYGARSIKARLASKALDAALGEAFNAMSAGAGRRLTSQLIVGPALSQKLAVGGRRLQSDXXXXXXXXTNETTLVEITQFQLNMWTGVGLALMGFLAIYATFNMDVQPDSLLYAKFITDTSGGGLKTD 403
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BLAST of mRNA_H-elongata_contig50639.12312.1 vs. uniprot
Match: A0A836C772_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C772_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.980e-10
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  386 SANENTTLVDITQFQLNLWTGVGLALIAFLAVYATINMDVQPDSLLYAKFIADTS 550
            +A  N TLVDITQ+QLNLWTGV  AL+   A+Y   +MD+  DSLLYAKF ADTS
Sbjct:  268 NATANVTLVDITQYQLNLWTGVFFALLVVAAIYGVASMDIGRDSLLYAKFQADTS 322
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BLAST of mRNA_H-elongata_contig50639.12312.1 vs. uniprot
Match: A0A7S2R5A0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5A0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.610e-7
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:  293 GRRLTSQLVVGSALTERLAVGGRRLADENSTSANENTTLVDITQFQLNLWTGVGLALIAFLAVYATINMDVQPDSLLYAKFIADTS 550
            G+ L  QL++G +         RRL D+      +  TL +I  FQ+NLWT V L L+   A+   +NMD+QPDSLLYAKF AD S
Sbjct:  275 GKSLGVQLLIGDSR--------RRLEDDP-----DYYTLPEIVTFQINLWTAVALVLVLLSALCCMVNMDIQPDSLLYAKFQADVS 347
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BLAST of mRNA_H-elongata_contig50639.12312.1 vs. uniprot
Match: A0A7S2D6B3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6B3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.940e-7
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 2 
Query:  203 YGEKSAKAAQAFKALDASLAEFFDAMSSRSGRRLTSQLVVGSALTERLAVGGRRLADE-----NSTSA-------NENTTLVDITQFQLNLWTGVGLALIAFLAVYATINMDVQPDSLLYAKFIADTS 550
            +G+ S KA  A   +DA+  E    +S+R   ++ + +++ +      +V  R L DE     ++T+A       N + ++  I ++ L LWTG+ + LI   A+   +NMD+QPDSLLYAKF AD S
Sbjct:  270 HGDDSPKANAAMSLVDAAAREVLAGISARYDDQVAAAVLMDN------SVAARPLHDEFHRFLSATNAPTMTPGYNSSVSIEQIVEYNLGLWTGIVMVLILLSAICCMVNMDIQPDSLLYAKFQADVS 391
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BLAST of mRNA_H-elongata_contig50639.12312.1 vs. uniprot
Match: A0A7S3JQS7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQS7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.150e-6
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:  377 NSTSANENTT----LVDITQFQLNLWTGVGLALIAFLAVYATINMDVQPDSLLYAKFIADTSGGGL 562
            N    +++TT    + DI QFQLN+WTG+ L L+   A+ A +NM  + DSLLYA F A+ SGGGL
Sbjct:  271 NKRKLDDSTTTYYPISDIRQFQLNMWTGIALVLVLAAALAAMVNMKPEYDSLLYATFQANVSGGGL 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50639.12312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNL1_ECTSI1.870e-4265.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C772_9STRA3.980e-1063.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R5A0_9STRA1.610e-744.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D6B3_9STRA1.940e-733.59Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3JQS7_9STRA1.150e-648.48Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50639contigH-elongata_contig50639:1772..3664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRenin receptor-like
Ec32 orthologEc-01_005070.1
Hectar predicted targeting categoryother localisation
Exons2
Model size1278
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50639.12312.1prot_H-elongata_contig50639.12312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50639 2476..3531 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.8232124-UTR-H-elongata_contig50639:1771..24751622930831.8232124-UTR-H-elongata_contig50639:1771..2475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50639 1772..2475 -
1691679589.450772-UTR-H-elongata_contig50639:1771..24751691679589.450772-UTR-H-elongata_contig50639:1771..2475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50639 1772..2475 -
1622930831.8749254-UTR-H-elongata_contig50639:3531..36641622930831.8749254-UTR-H-elongata_contig50639:3531..3664Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50639 3532..3664 -
1691679589.4774466-UTR-H-elongata_contig50639:3531..36641691679589.4774466-UTR-H-elongata_contig50639:3531..3664Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50639 3532..3664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.8414602-CDS-H-elongata_contig50639:2475..26811622930831.8414602-CDS-H-elongata_contig50639:2475..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50639 2476..2681 -
1691679589.4623106-CDS-H-elongata_contig50639:2475..26811691679589.4623106-CDS-H-elongata_contig50639:2475..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50639 2476..2681 -
1622930831.8608449-CDS-H-elongata_contig50639:3296..35311622930831.8608449-CDS-H-elongata_contig50639:3296..3531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50639 3297..3531 -
1691679589.4700418-CDS-H-elongata_contig50639:3296..35311691679589.4700418-CDS-H-elongata_contig50639:3296..3531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50639 3297..3531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50639.12312.1

>prot_H-elongata_contig50639.12312.1 ID=prot_H-elongata_contig50639.12312.1|Name=mRNA_H-elongata_contig50639.12312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MHHRKHALLYELLYSRVQAMKKTYGEKSAKAAQAFKALDASLAEFFDAMS
SRSGRRLTSQLVVGSALTERLAVGGRRLADENSTSANENTTLVDITQFQL
NLWTGVGLALIAFLAVYATINMDVQPDSLLYAKFIADTSGGGLKTD*
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mRNA from alignment at H-elongata_contig50639:1772..3664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50639.12312.1 ID=mRNA_H-elongata_contig50639.12312.1|Name=mRNA_H-elongata_contig50639.12312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-elongata_contig50639:1772..3664- (Himanthalia elongata Himel1 dioecious)
GCGAGCGCAAATCTCGTGGCAAAGCGATGAGCTTGTTAAACAGTACCGTC
CAACCGAAAAAAACTTCATAAGTTTCTAGGTACATGATATTCCCTCTACT
GCGGCCGTTAACCATGTACAGTACCATGTTCTCATGCATCATCGAAAGCA
CGCATTATTGTATGAACTGTTGTATTCACGAGTGCAGGCGATGAAGAAAA
CATACGGAGAGAAGTCGGCCAAGGCAGCCCAGGCGTTCAAGGCCCTCGAC
GCCTCATTGGCGGAGTTTTTCGATGCGATGTCCTCAAGATCGGGGCGGAG
ACTCACCTCGCAACTCGTTGTTGGCTCCGCGCTGACAGAGAGGCTCGCTG
TCGGCGGACGTCGTCTGGGTACGTGTCATGCCTTTATTATTTGTTTTTTT
GTTTTTATTTTAGGGATTTTGATGATATGTTATCTAGGTCGCGTTCGGAG
AGGAAAAAAAGACGTCAGTGGTGTGTTGCTTCCCTTTATACTTCCCTTTA
GACTGTGAGGGTTGTGGTTAAGCGTTACGTTACGCTAGGACAATGTACAA
TATACTAGAGGGCAGAGTCCCAGGGTACTAGACGTCAGTTCGTGAGGGTC
GAATGGATAAGATGCACCCTTCGGCGAATGAAGCCGCTTCGAGTGCAGGC
CGTATGACATCGTGTATCGTGTAGGGTTTGGTATATGGTATGCCTTTTTA
TGTTGGTGGACGGTGAAACGAGTGGTGGGGGGGTGCTTGGCTCTCTCCCA
CCTTCCGACGATGGGGACGGGAAGAATCGCGAAATCCCATACACGGCCCC
GGCTGCTCGAATGATCGCTGTGAATTTTGTGACGCAAGCGTGTTTTTCGT
TCAGGCCATTGTTCGCCAGAACCCAGCTTTGTCGTGCACGAGATGAAATG
CACGGCACCCGTTGAGTTTGTTTTCCGCGAAACAAGTCCTCTCCTTCCCC
ACCCACTCGTGTCAATATCCGTCGACGTAACAGCCGACGAAAATTCGACG
TCCGCCAACGAGAACACGACTCTGGTGGACATCACTCAGTTCCAGCTCAA
CCTGTGGACGGGAGTCGGGCTTGCCTTAATCGCCTTCTTGGCTGTGTACG
CGACTATTAACATGGACGTGCAGCCTGACAGCCTCCTGTACGCCAAGTTT
ATCGCCGACACCAGCGGAGGCGGGCTTAAGACGGACTAGACAAGCGACGG
ATATCTATTAATAGATAAAAAAACAAACAAAACGTGCTTGTACCGTATTG
CAAATAAGTTGCTTGTAAAACACTGTTATAACAGTGTCGTACCGGTGAGT
AGGTTGTTTTGTTTGTTTGTTTTTTCCTGTCCCCGGATCCCTCCCTATGC
ATTCTATGGAGTGTACTGTAGCGTTTGGTGTTGTGAACGCATTCGTGGTA
CAGTAATAATTATACTTGGAGGGCAAATTCGTAACACGCTGTGACGTCAC
CGAAGAATAAAAAGAGAAGGATAAGAACAGCGGAGTTGTTGATCGGGGTG
CATAACGGTAGGGGAAATCACATATCTAGATATCTCCAATATCTACCATT
CGCACTTGTGTAATGGTTTCGATTTGAGAGAGGAGGGGATGAATTGGTAC
AGTACACGTTCCTGTGTGCTATATATACCAGGTAGACAATGCCACCGACC
GGCCACAGGACATTCGTCCAGGACGAATCGCGAAAGTTGAGTGGTAATCA
ACAGGCTAGATATATACTCGAAGCTCGACTCCTTCGCGACGGTGCGAACC
TCAACTTCGCCCTCCCCCCCAACCCCCCGTTCCCCGATTAAGGACCCTGC
GAGATGGCGCAACCAAATGTATATCTTATGTCTGATGTATTCGCTCTCTT
AAGCCCTCGATGCGAGCCGGTCCACTCGCAACCGTAAAATGTG
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Coding sequence (CDS) from alignment at H-elongata_contig50639:1772..3664-

>mRNA_H-elongata_contig50639.12312.1 ID=mRNA_H-elongata_contig50639.12312.1|Name=mRNA_H-elongata_contig50639.12312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig50639:1772..3664- (Himanthalia elongata Himel1 dioecious)
ATGCATCATCGAAAGCACGCATTATTGTATGAACTGTTGTATTCACGAGT
GCAGGCGATGAAGAAAACATACGGAGAGAAGTCGGCCAAGGCAGCCCAGG
CGTTCAAGGCCCTCGACGCCTCATTGGCGGAGTTTTTCGATGCGATGTCC
TCAAGATCGGGGCGGAGACTCACCTCGCAACTCGTTGTTGGCTCCGCGCT
GACAGAGAGGCTCGCTGTCGGCGGACGTCGTCTGGATGCATCATCGAAAG
CACGCATTATTGTATGAACTGTTGTATTCACGAGTGCAGGCGATGAAGAA
AACATACGGAGAGAAGTCGGCCAAGGCAGCCCAGGCGTTCAAGGCCCTCG
ACGCCTCATTGGCGGAGTTTTTCGATGCGATGTCCTCAAGATCGGGGCGG
AGACTCACCTCGCAACTCGTTGTTGGCTCCGCGCTGACAGAGAGGCTCGC
TGTCGGCGGACGTCGTCTGGCCGACGAAAATTCGACGTCCGCCAACGAGA
ACACGACTCTGGTGGACATCACTCAGTTCCAGCTCAACCTGTGGACGGGA
GTCGGGCTTGCCTTAATCGCCTTCTTGGCTGTGTACGCGACTATTAACAT
GGACGTGCAGCCTGACAGCCTCCTGTACGCCAAGTTTATCGCCGACACCA
GCGGAGGCGGGCTTAAGACGGACTAGCCGACGAAAATTCGACGTCCGCCA
ACGAGAACACGACTCTGGTGGACATCACTCAGTTCCAGCTCAACCTGTGG
ACGGGAGTCGGGCTTGCCTTAATCGCCTTCTTGGCTGTGTACGCGACTAT
TAACATGGACGTGCAGCCTGACAGCCTCCTGTACGCCAAGTTTATCGCCG
ACACCAGCGGAGGCGGGCTTAAGACGGACTAG
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