mRNA_H-elongata_contig50593.12310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50593.12310.1
Unique NamemRNA_H-elongata_contig50593.12310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50593.12310.1 vs. uniprot
Match: D7FVP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP9_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 1.340e-64
Identity = 97/118 (82.20%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:  223 GSVMKSVGSATGRSVRAVVHALQPKSVGLGEILDTWKIEQVIGKPPGRVTRCAATVEFRRDGTVATSFEGRETVSDFTFRSYSWPRACTIEFRARAFQGPWDEEPVWKIYKVRTKKRL 576
            G VMKSVG ATG+S++A+VHALQPKSVGLGEILDTWKIEQV+GKPPGRVT+CAATVEFRRDGTVATSF+GRETVSDFTFR+++WPRACTIEF A+AFQGPWDEEPVWK+YK    ++L
Sbjct:  248 GGVMKSVGKATGKSMKAMVHALQPKSVGLGEILDTWKIEQVVGKPPGRVTKCAATVEFRRDGTVATSFDGRETVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKVYKGSFSRKL 365
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BLAST of mRNA_H-elongata_contig50593.12310.1 vs. uniprot
Match: A0A7S2S4V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4V2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.240e-13
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:  268 RAVVHALQPKSVGLGEILDTWKIEQVIGKPPGRVTRCAATVEFRRDGTVATSFEGRETVSDFTFRSYSWPRACTIEFRARAFQGPWDEEPVWKIYKVRTKKRL 576
            +A  +   PK V   +I+  W+++Q           CAA VE    G V  +++  E  + + F   SWPR+CTI+F ARAFQGP DE+PV  +Y    ++++
Sbjct:  154 KAAYYLASPKHVSRQDIVGVWRLDQT-----ALSASCAANVELTMRGDVLVTYQAEEFRTPYYFSERSWPRSCTIQFEARAFQGPRDEQPVNMLYVASFRRKI 251
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BLAST of mRNA_H-elongata_contig50593.12310.1 vs. uniprot
Match: A0A7S1D3U6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3U6_CYCTE)

HSP 1 Score: 70.9 bits (172), Expect = 3.810e-12
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  376 CAATVEFRRDGTVATSFEGRETVSDFTFRSYSWPRACTIEFRARAFQGPWDEEPVWKIYKVRTKKRL 576
            CAA +E    G V   +E +  VS F FR  +WP++C IEF ARAFQGP DEEPV   YK   +++L
Sbjct:   14 CAANIELTPRGEVLVRYEDKVFVSTFLFRERNWPQSCWIEFEARAFQGPDDEEPVLMRYKGYFRRKL 80
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BLAST of mRNA_H-elongata_contig50593.12310.1 vs. uniprot
Match: A0A7R9ZAC9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAC9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.490e-7
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  427 EGRETVSDFTFRSYSWPRACTIEFRARAFQGPWDEEPVWKIYKVRTKKRL 576
            E +E  + +TFR  +WPR+C +EF ARAFQGP D+EPV   Y+   ++++
Sbjct:   17 ETKEFRTPYTFRERAWPRSCYVEFEARAFQGPDDDEPVVMFYRGYFRRKI 66
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BLAST of mRNA_H-elongata_contig50593.12310.1 vs. uniprot
Match: A0A7S4MEB1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MEB1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.920e-7
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  433 RETVSDFTFRSYSWPRACTIEFRARAFQGPWDEEPVWKIYKVRTKKRL 576
            RE  + + FR  SWPR+CT+EF ARAFQGP D+EPV   Y+   ++++
Sbjct:  329 REFRTPYKFRERSWPRSCTVEFEARAFQGPDDDEPVTMYYRGYFRRKI 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50593.12310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVP9_ECTSI1.340e-6482.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S4V2_9STRA1.240e-1334.95Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1D3U6_CYCTE3.810e-1249.25Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9ZAC9_9STRA5.490e-746.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4MEB1_9STRA7.920e-750.00Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50593contigH-elongata_contig50593:1211..2928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue3.3e-53
Seed eggNOG ortholog2880.D7FVP9
EggNOG OGs2ETV1@1,2SW46@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005950.1
Exons3
Model size597
Cds size597
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50593.12310.1prot_H-elongata_contig50593.12310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50593 1211..2928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.6936555-CDS-H-elongata_contig50593:1210..15521622930831.6936555-CDS-H-elongata_contig50593:1210..1552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50593 1211..1552 +
1691679589.388634-CDS-H-elongata_contig50593:1210..15521691679589.388634-CDS-H-elongata_contig50593:1210..1552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50593 1211..1552 +
1622930831.7123754-CDS-H-elongata_contig50593:2050..22031622930831.7123754-CDS-H-elongata_contig50593:2050..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50593 2051..2203 +
1691679589.398871-CDS-H-elongata_contig50593:2050..22031691679589.398871-CDS-H-elongata_contig50593:2050..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50593 2051..2203 +
1622930831.7231772-CDS-H-elongata_contig50593:2826..29281622930831.7231772-CDS-H-elongata_contig50593:2826..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50593 2827..2928 +
1691679589.4151013-CDS-H-elongata_contig50593:2826..29281691679589.4151013-CDS-H-elongata_contig50593:2826..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50593 2827..2928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50593.12310.1

>prot_H-elongata_contig50593.12310.1 ID=prot_H-elongata_contig50593.12310.1|Name=mRNA_H-elongata_contig50593.12310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
IDDGDDDGDRDNGRCRYGSGNDRSRRGDRNLQRRDRHQGAAQDGGAHLAR
RRADDRRQSSSRRGILPVDRERNGGSVMKSVGSATGRSVRAVVHALQPKS
VGLGEILDTWKIEQVIGKPPGRVTRCAATVEFRRDGTVATSFEGRETVSD
FTFRSYSWPRACTIEFRARAFQGPWDEEPVWKIYKVRTKKRLHTNTYS*
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mRNA from alignment at H-elongata_contig50593:1211..2928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50593.12310.1 ID=mRNA_H-elongata_contig50593.12310.1|Name=mRNA_H-elongata_contig50593.12310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1718bp|location=Sequence derived from alignment at H-elongata_contig50593:1211..2928+ (Himanthalia elongata Himel1 dioecious)
ATAGATGATGGTGATGATGATGGCGATCGAGATAACGGGAGGTGCCGGTA
TGGCTCCGGCAACGACAGAAGCAGGCGCGGCGACCGCAACTTGCAGCGCA
GGGATCGCCACCAAGGCGCTGCTCAAGACGGCGGAGCGCACCTTGCCCGG
CGTCGTGCCGATGACCGGCGGCAGTCATCCTCGCGGAGGGGGATACTCCC
GGTAGACCGGGAGAGGAACGGCGGGAGTGTGATGAAAAGCGTCGGCTCCG
CCACGGGTCGATCCGTAAGGGCCGTGGTGCACGCCCTCCAGCCGAAGTCG
GTTGGCCTGGGAGAGATCCTTGACACCTGGAAAATCGAGCAGGTGCGTGG
AGTGATCCCAAGTCTGCGTTCTTCTTGGAGGCTATGCGTGGGGTACTCGC
CGTTCGCGAGGGGCGCGCTGCGTGTGCTCTCGATGCCCTAGCAGCTCTCT
CGTGGGAGGCATCGTCCGCATCGCCCCCGTTCTGGGAAAAATACGTTTTG
TACAGTATGAAACACGTGCTGGTTGATTGTCGTGAACCCAGAAGGACCGG
GTGCCGCTTGATTTTTTTGTTTTTGTTTGACCCAGATGTCCTCCGAACCT
CTCTTGTAAAAAAATCCGACGAAAAACAACGAAGTGTCGGGGACTTAGCT
TGCACGGAAGATCGTCGTCGACGCAAGCGCCAGGGCTGTGCTGCGTCATC
CAACAGAGACAAGACTGTTTTTAATATCCGTTTCTTGGTTGAATTCGGTC
TGACTGAAGGAAACATGCGTGTTTGTTGTACCGGTCTGTCTGGCTTTCTC
CCCGGGTGGTCCTGGCTACCGCATCTTCCGTGATGGAAAGGTGATCGGAA
AGCCTCCGGGTCGGGTGACTCGATGCGCAGCGACGGTCGAGTTCCGCAGG
GACGGCACCGTGGCCACGTCCTTCGAAGGGCGCGAGACTGTGTCCGACTT
CACGTTCCGATCATACTCGTGGCCGAGGGCTTGTACGATCGAGGTGCGGC
TCTCTCACGCTTGTACGGTTCCTTGCCGCCAGTATGCCTGCGGCTACCTC
AACTCGCTGCTGCAGTATATAAGAGTACCTTCGCGAATCTTAGGAAGATG
GAAATACTGGCCTGCGATAAAACACAACCACAAGAATTCTCCAATAATAA
GCCAAGCGCGAAATGTGCTGTACCATAAAATTGACTCCATGCCACGGGTT
GATACAAGACGATGGTAAATGAAAACTCTACCCGGGGTTACGAAGTTACT
CAATATCGATTGGTGGGTGGGTGGACTGCACCCTTAACGTAGTCCTCGTC
CCCGGAGGTTTAGTAGCACTGCGTGGTGCCTGGCAATGTATTTTGCCAAG
CTGGTTGTGTGGCGCGGAAGGGGAAGGCGTACCGAGCTCTGCGAACGGCC
TCCAGAAAATGCCGAACTCCTTGCTGACAGATGGAATCGCAGCTTAAAGA
AAATACGAGCCGTGGCTTCCCCCGCGTCCTGCGTTAAACTTCACGGCAGG
GCATTGTTTCCGCGGTAACGTTGCACCTTGCCGAGCAAGGTCTCGTTTCT
TGATAACACTCTTTTTGCGTAGTTGATTTTTTGTTTCGTGTGTCTGTGGC
ACGCATCTCGCGGTAGTTCCGGGCGAGGGCTTTTCAGGGTCCGTGGGACG
AAGAGCCGGTGTGGAAGATCTACAAGGTGAGAACAAAAAAACGCCTCCAC
ACAAACACATATTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50593:1211..2928+

>mRNA_H-elongata_contig50593.12310.1 ID=mRNA_H-elongata_contig50593.12310.1|Name=mRNA_H-elongata_contig50593.12310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig50593:1211..2928+ (Himanthalia elongata Himel1 dioecious)
ATAGATGATGGTGATGATGATGGCGATCGAGATAACGGGAGGTGCCGGTA
TGGCTCCGGCAACGACAGAAGCAGGCGCGGCGACCGCAACTTGCAGCGCA
GGGATCGCCACCAAGGCGCTGCTCAAGACGGCGGAGCGCACCTTGCCCGG
CGTCGTGCCGATGACCGGCGGCAGTCATCCTCGCGGAGGGGGATACTCCC
GGTAGACCGGGAGAGGAACGGCGGGAGTGTGATGAAAAGCGTCGGCTCCG
CCACGGGTCGATCCGTAAGGGCCGTGGTGCACGCCCTCCAGCCGAAGTCG
GTTGGCCTGGGAGAGATCCTTGACACCTGGAAAATCGAGCAGATAGATGA
TGGTGATGATGATGGCGATCGAGATAACGGGAGGTGCCGGTATGGCTCCG
GCAACGACAGAAGCAGGCGCGGCGACCGCAACTTGCAGCGCAGGGATCGC
CACCAAGGCGCTGCTCAAGACGGCGGAGCGCACCTTGCCCGGCGTCGTGC
CGATGACCGGCGGCAGTCATCCTCGCGGAGGGGGATACTCCCGGTAGACC
GGGAGAGGAACGGCGGGAGTGTGATGAAAAGCGTCGGCTCCGCCACGGGT
CGATCCGTAAGGGCCGTGGTGCACGCCCTCCAGCCGAAGTCGGTTGGCCT
GGGAGAGATCCTTGACACCTGGAAAATCGAGCAGGTGATCGGAAAGCCTC
CGGGTCGGGTGACTCGATGCGCAGCGACGGTCGAGTTCCGCAGGGACGGC
ACCGTGGCCACGTCCTTCGAAGGGCGCGAGACTGTGTCCGACTTCACGTT
CCGATCATACTCGTGGCCGAGGGCTTGTACGATCGAGGTGATCGGAAAGC
CTCCGGGTCGGGTGACTCGATGCGCAGCGACGGTCGAGTTCCGCAGGGAC
GGCACCGTGGCCACGTCCTTCGAAGGGCGCGAGACTGTGTCCGACTTCAC
GTTCCGATCATACTCGTGGCCGAGGGCTTGTACGATCGAGTTCCGGGCGA
GGGCTTTTCAGGGTCCGTGGGACGAAGAGCCGGTGTGGAAGATCTACAAG
GTGAGAACAAAAAAACGCCTCCACACAAACACATATTCGTGATTCCGGGC
GAGGGCTTTTCAGGGTCCGTGGGACGAAGAGCCGGTGTGGAAGATCTACA
AGGTGAGAACAAAAAAACGCCTCCACACAAACACATATTCGTGA
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