mRNA_H-elongata_contig50485.12292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50485.12292.1
Unique NamemRNA_H-elongata_contig50485.12292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50485.12292.1 vs. uniprot
Match: D8LUA6_ECTSI (WW domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA6_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 5.850e-56
Identity = 156/325 (48.00%), Postives = 187/325 (57.54%), Query Frame = 1 
Query:    1 IHRRTRLSLDQERRRLDRLPRSQRLRQVKGHPLGGMTLLELEDRHLLDVGIGKIAKRLASMRGGG-------VRQMDTDLLRRSARLFRRAQQERDARYAL-----------------KFEQESIKTPLHGCGAFGINTRATSARKG-------SRRPASASREH--YKPASYSFSLD---SAEQNRLASA---NTSKPGRTDKRVYPTDGAPANVGLYSGGGDRCSLKQRRPMSAKPALTCGSGWKPGRSRDCRRDGEKS---YFGESRRRHLQEAGYIG------------QGKLDVVSIGSDLSDLSSHDIVEYTDEEESPF 813
            + RRTRLSLD+ERRRLDR+PRSQRL QV+GHPLGGMTLL+LE+RHLLDVGIG++ ++LA  RG G       VRQ + DLLRRSARL RRAQ+ERD+R  +                 +F       P  G    G  +++   RKG       SRRPASASR+    +  S SFSL+      ++R  S    N    GRT +   P       +GLYSGGG RCSLKQRRP+SAKPALT  SGW+PGR+R   R G      +F E  RR +   G  G             G LD     SD+SDLS H IVEYTDEEE PF
Sbjct:  127 VRRRTRLSLDRERRRLDRVPRSQRLSQVRGHPLGGMTLLQLEERHLLDVGIGQMTRQLARRRGRGXXXXXXXVRQSNEDLLRRSARLIRRAQEERDSRLMIGNAAAYHPSSRYLGGDTRFSNAFRDEPWDGD--VGGRSQSAGGRKGGGSTKRRSRRPASASRDRGSRRLMSSSFSLEPTGGGSRDRAYSTSDYNRQAWGRTLEAEAPP------MGLYSGGGTRCSLKQRRPLSAKPALT--SGWEPGRARTRGRGGNGDRWDHFDEDDRRAVHSRGERGTVRAEAGVRSNEDGGLDY----SDMSDLSPHGIVEYTDEEEGPF 437
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BLAST of mRNA_H-elongata_contig50485.12292.1 vs. uniprot
Match: A0A6H5J9P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 5.330e-49
Identity = 143/327 (43.73%), Postives = 178/327 (54.43%), Query Frame = 1 
Query:    1 IHRRTRLSLDQERRRLDRLPRSQRLRQVKGHPLGGMTLLELEDRHLLDVGIGKIAKRLASMRG-------GGVRQMDTDLLRRSARLFRRAQQERDARY----ALKFEQESIKTPLHG-------C------GAFGINTRATSARKGS-------RRPASASREHYKPASYSFSLDSAEQNRLASANTSKP--GRTDKRVYPT------------DGAPANVGLYSGGGDRCSLKQRRPMSAKPALTCGSGWKPGRSRDCRRDGEKS---YFGESRRRHLQEAGYIG--------QGKLDVVSIGSDLSDLSSHDIVEYTDEEESPF 813
            + RRTRLSLD+ERRRLDR+PRSQRL QV+GHPLGGMTLL+LE+R+LLDVG+G++ ++LA  RG             + DLLRRSARL RRAQ+ERD+R+    A  +   S    + G       C      G  G  +++  ARKG          PASASR            D   +  ++S+ + +P  G T  R Y T            +G    +GLYSGGG RCSLK RRP SAKPA T  SGW+PGR+R   R G      +F E  RR +   G  G        + K D     SD+SDLS H IVEY DEEE PF
Sbjct:  127 VRRRTRLSLDRERRRLDRVPRSQRLSQVRGHPLGGMTLLQLEERYLLDVGLGQMTRQLARRRGRXXXXXXXXXXXSNEDLLRRSARLIRRAQEERDSRFMMGNAAAYHPSSRYAVVRGDTRFSNACRDESWDGGAGGRSQSLGARKGGGSTXXXXXXPASASR------------DRGSRRLMSSSFSHEPTGGGTRDRAYSTSDYDRQAWGRTLEGEAPPMGLYSGGGTRCSLKHRRPSSAKPAFT--SGWEPGRARTRGRGGNGDGWDHFDEDDRRAVHSRGERGTVRAEAGARSKEDGGLDYSDMSDLSPHGIVEYNDEEEGPF 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50485.12292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUA6_ECTSI5.850e-5648.00WW domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5J9P3_9PHAE5.330e-4943.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50485contigH-elongata_contig50485:2988..3806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_004290.1
Hectar predicted targeting categoryother localisation
Exons1
Model size819
Cds size819
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.0813773-CDS-H-elongata_contig50485:2987..38061622930830.0813773-CDS-H-elongata_contig50485:2987..3806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50485 2988..3806 +
1691679588.6981816-CDS-H-elongata_contig50485:2987..38061691679588.6981816-CDS-H-elongata_contig50485:2987..3806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50485 2988..3806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50485.12292.1prot_H-elongata_contig50485.12292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50485 2988..3806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50485.12292.1

>prot_H-elongata_contig50485.12292.1 ID=prot_H-elongata_contig50485.12292.1|Name=mRNA_H-elongata_contig50485.12292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp
IHRRTRLSLDQERRRLDRLPRSQRLRQVKGHPLGGMTLLELEDRHLLDVG
IGKIAKRLASMRGGGVRQMDTDLLRRSARLFRRAQQERDARYALKFEQES
IKTPLHGCGAFGINTRATSARKGSRRPASASREHYKPASYSFSLDSAEQN
RLASANTSKPGRTDKRVYPTDGAPANVGLYSGGGDRCSLKQRRPMSAKPA
LTCGSGWKPGRSRDCRRDGEKSYFGESRRRHLQEAGYIGQGKLDVVSIGS
DLSDLSSHDIVEYTDEEESPFK*
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mRNA from alignment at H-elongata_contig50485:2988..3806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50485.12292.1 ID=mRNA_H-elongata_contig50485.12292.1|Name=mRNA_H-elongata_contig50485.12292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=819bp|location=Sequence derived from alignment at H-elongata_contig50485:2988..3806+ (Himanthalia elongata Himel1 dioecious)
ATTCATCGGCGGACGAGGTTGAGCCTTGACCAAGAAAGGCGGCGGCTTGA
CCGATTGCCTCGAAGCCAACGCCTACGGCAGGTCAAGGGGCACCCGTTGG
GAGGCATGACTCTACTAGAACTTGAGGATAGACATCTGCTGGATGTTGGA
ATTGGAAAGATTGCCAAACGTCTCGCAAGCATGAGAGGAGGAGGGGTACG
TCAGATGGATACCGACCTTCTGCGCCGCTCCGCGCGGCTCTTTCGGCGGG
CTCAGCAGGAACGTGATGCTCGGTACGCTCTCAAGTTTGAGCAAGAGTCC
ATTAAAACCCCTTTGCATGGTTGTGGTGCCTTTGGTATTAACACAAGAGC
AACAAGCGCAAGAAAAGGAAGTCGAAGGCCTGCTTCGGCCTCCCGAGAGC
ATTACAAGCCGGCTTCGTATTCATTCTCGTTGGATTCGGCCGAACAAAAC
AGATTGGCGAGTGCCAACACAAGCAAACCAGGGCGTACCGATAAAAGGGT
ATACCCTACCGACGGGGCTCCTGCAAACGTTGGACTATATTCTGGCGGGG
GAGACAGATGTAGTCTGAAGCAGAGACGCCCCATGTCTGCTAAACCTGCG
CTTACCTGTGGATCTGGTTGGAAGCCGGGAAGGTCAAGGGATTGCCGAAG
GGACGGCGAAAAATCTTACTTCGGTGAGAGTCGACGGAGGCATTTGCAAG
AGGCAGGGTACATCGGTCAAGGCAAGCTTGACGTGGTATCTATAGGATCC
GACCTGTCGGATCTGAGTTCGCACGACATTGTGGAGTACACAGACGAAGA
GGAGAGCCCTTTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50485:2988..3806+

>mRNA_H-elongata_contig50485.12292.1 ID=mRNA_H-elongata_contig50485.12292.1|Name=mRNA_H-elongata_contig50485.12292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at H-elongata_contig50485:2988..3806+ (Himanthalia elongata Himel1 dioecious)
ATTCATCGGCGGACGAGGTTGAGCCTTGACCAAGAAAGGCGGCGGCTTGA
CCGATTGCCTCGAAGCCAACGCCTACGGCAGGTCAAGGGGCACCCGTTGG
GAGGCATGACTCTACTAGAACTTGAGGATAGACATCTGCTGGATGTTGGA
ATTGGAAAGATTGCCAAACGTCTCGCAAGCATGAGAGGAGGAGGGGTACG
TCAGATGGATACCGACCTTCTGCGCCGCTCCGCGCGGCTCTTTCGGCGGG
CTCAGCAGGAACGTGATGCTCGGTACGCTCTCAAGTTTGAGCAAGAGTCC
ATTAAAACCCCTTTGCATGGTTGTGGTGCCTTTGGTATTAACACAAGAGC
AACAAGCGCAAGAAAAGGAAGTCGAAGGCCTGCTTCGGCCTCCCGAGAGC
ATTACAAGCCGGCTTCGTATTCATTCTCGTTGGATTCGGCCGAACAAAAC
AGATTGGCGAGTGCCAACACAAGCAAACCAGGGCGTACCGATAAAAGGGT
ATACCCTACCGACGGGGCTCCTGCAAACGTTGGACTATATTCTGGCGGGG
GAGACAGATGTAGTCTGAAGCAGAGACGCCCCATGTCTGCTAAACCTGCG
CTTACCTGTGGATCTGGTTGGAAGCCGGGAAGGTCAAGGGATTGCCGAAG
GGACGGCGAAAAATCTTACTTCGGTGAGAGTCGACGGAGGCATTTGCAAG
AGGCAGGGTACATCGGTCAAGGCAAGCTTGACGTGGTATCTATAGGATCC
GACCTGTCGGATCTGAGTTCGCACGACATTGTGGAGTACACAGACGAAGA
GGAGAGCCCTTTCAAGTGAATTCATCGGCGGACGAGGTTGAGCCTTGACC
AAGAAAGGCGGCGGCTTGACCGATTGCCTCGAAGCCAACGCCTACGGCAG
GTCAAGGGGCACCCGTTGGGAGGCATGACTCTACTAGAACTTGAGGATAG
ACATCTGCTGGATGTTGGAATTGGAAAGATTGCCAAACGTCTCGCAAGCA
TGAGAGGAGGAGGGGTACGTCAGATGGATACCGACCTTCTGCGCCGCTCC
GCGCGGCTCTTTCGGCGGGCTCAGCAGGAACGTGATGCTCGGTACGCTCT
CAAGTTTGAGCAAGAGTCCATTAAAACCCCTTTGCATGGTTGTGGTGCCT
TTGGTATTAACACAAGAGCAACAAGCGCAAGAAAAGGAAGTCGAAGGCCT
GCTTCGGCCTCCCGAGAGCATTACAAGCCGGCTTCGTATTCATTCTCGTT
GGATTCGGCCGAACAAAACAGATTGGCGAGTGCCAACACAAGCAAACCAG
GGCGTACCGATAAAAGGGTATACCCTACCGACGGGGCTCCTGCAAACGTT
GGACTATATTCTGGCGGGGGAGACAGATGTAGTCTGAAGCAGAGACGCCC
CATGTCTGCTAAACCTGCGCTTACCTGTGGATCTGGTTGGAAGCCGGGAA
GGTCAAGGGATTGCCGAAGGGACGGCGAAAAATCTTACTTCGGTGAGAGT
CGACGGAGGCATTTGCAAGAGGCAGGGTACATCGGTCAAGGCAAGCTTGA
CGTGGTATCTATAGGATCCGACCTGTCGGATCTGAGTTCGCACGACATTG
TGGAGTACACAGACGAAGAGGAGAGCCCTTTCAAGTGA
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