mRNA_H-elongata_contig5045.12285.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5045.12285.1
Unique NamemRNA_H-elongata_contig5045.12285.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5045.12285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5045contigH-elongata_contig5045:5697..8270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1364
Cds size1362
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5045.12285.1prot_H-elongata_contig5045.12285.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5045 5697..8270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.4868295-CDS-H-elongata_contig5045:5696..59571622930829.4868295-CDS-H-elongata_contig5045:5696..5957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 5697..5957 +
1691679588.4452603-CDS-H-elongata_contig5045:5696..59571691679588.4452603-CDS-H-elongata_contig5045:5696..5957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 5697..5957 +
1622930829.5098267-CDS-H-elongata_contig5045:6307..64681622930829.5098267-CDS-H-elongata_contig5045:6307..6468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 6308..6468 +
1691679588.4553542-CDS-H-elongata_contig5045:6307..64681691679588.4553542-CDS-H-elongata_contig5045:6307..6468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 6308..6468 +
1622930829.528049-CDS-H-elongata_contig5045:6969..71021622930829.528049-CDS-H-elongata_contig5045:6969..7102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 6970..7102 +
1691679588.4652927-CDS-H-elongata_contig5045:6969..71021691679588.4652927-CDS-H-elongata_contig5045:6969..7102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 6970..7102 +
1622930829.5431828-CDS-H-elongata_contig5045:7463..82701622930829.5431828-CDS-H-elongata_contig5045:7463..8270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 7464..8270 +
1691679588.4750197-CDS-H-elongata_contig5045:7463..82701691679588.4750197-CDS-H-elongata_contig5045:7463..8270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5045 7464..8270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5045.12285.1

>prot_H-elongata_contig5045.12285.1 ID=prot_H-elongata_contig5045.12285.1|Name=mRNA_H-elongata_contig5045.12285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=454bp
NIREAAEREGGTKPVVANTENGDCHKKNCKEIKLEIPMLKDEQVTALNRK
MLGAQDTVSRSEEERKMMKDEARGLRDELTAVKGPLEETMESVRLKLREA
LTEKNEAIKAGELGRARFEVVEAEAARQEARAVTAEDQLSRAIEEAKRLR
FRLEETTAELESARSAVSTAKAGGIKEDAPEQESEDQTLSTQSRMVREVV
PGQVPITTESADELAFLRHATEEALQKTHSLQAELDLVVRETDELREALK
SARELHLAVVDSAVVAKAEAEAKTKLQSSEHERQMEEKDLEVKSLRTRLY
LSEEALREAQRSSASMEAISRREALLKTAALEETNAEMEALKVAVAEAVD
AREKAECNNTEDRATRNGELSSFRESLEMLRAELAGAKARASSAEEKAKT
AAATTASRIAGLEARFEGAEAVRDAALKAAASKLFDGQKRDSERTAAREV
DMVV
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mRNA from alignment at H-elongata_contig5045:5697..8270+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5045.12285.1 ID=mRNA_H-elongata_contig5045.12285.1|Name=mRNA_H-elongata_contig5045.12285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2574bp|location=Sequence derived from alignment at H-elongata_contig5045:5697..8270+ (Himanthalia elongata Himel1 dioecious)
AACATTAGGGAGGCCGCCGAGAGAGAGGGGGGAACGAAGCCAGTCGTCGC
CAACACCGAAAATGGTGACTGCCACAAAAAAAACTGTAAAGAGATTAAGT
TAGAGATCCCCATGCTGAAAGACGAGCAAGTAACAGCTCTCAACAGAAAG
ATGCTCGGGGCGCAAGATACCGTCAGTCGCTCGGAGGAGGAACGGAAGAT
GATGAAAGACGAAGCACGGGGCTTGCGGGACGAGCTCACCGCGGTAAAGG
GGCCCTTAGAGGTACGATCAAACGGGACTCGTCAGAACAGGTCATACTTA
CAGAGAGAACGACGTGATTTGTGTTACTAATATTAGTAGTTCTGATGGAT
TTCGGGAGTTCCTAAACTCCTAATTAGCTTTAACGCGAAAAACAGTGACA
AACACGACTACACGAATACAGAGCGGCGGGGAGAAGACTCGCCGACTTCA
TCCGCGTGGTCATCTTCACCTGTCTTGGGGTGGCATTTGTTGCAAGGGGC
AAGGGGGCGAGCCTAAAATATGGACCACTGTCTCTTGTTTACCAGCCATT
CATGTACTTGTCGTATCATCCCCGCCTTCCTGATCTTGTGCCGCCCCGTT
CAACAATGAAGGAAACCATGGAGAGTGTAAGGCTAAAGTTACGGGAGGCG
CTGACTGAAAAGAATGAGGCAATCAAGGCCGGGGAGTTAGGACGAGCCCG
CTTTGAGGTGGTAGAGGCCGAAGCAGCAAGACAAGAAGCCAGGGCGGTCA
CAGCGGAAGACCAGTTATCTAGGTAGAGGGGCGCCATGTGCTCGATTTTA
TGCCGTAGGTCGTAGTATATACTACGGTATGTGGTTATGGTAGTAGCTTC
GGCTTCTGTTTTTTTTTGTTTTTTGTTTTATTAAGGACCTTTCGGAGGTC
GAAAAAATCACCCTCAGAATACCTGTTTTCTTGATCTCTCTCTTTGTGCT
GTTGATGTTATAGTAAGGTTCGAATGTTCGACGCACACGGTAGCCAAGTC
TGTCCACCCTTCCTTTGAGCCGAAGGCGGCATCGCAACAGCGCCGGCGAC
AGCGTGGAGAGTCTTCCCGCCGAATCGATGGGACTGTGAAAATAATCCGT
GTTCGCCCAGTGCAGTTTCGAGCCATTTGCTGTCGAATGCCCTCTCGTCC
CTACTCGAGCGGTAGCTAAACCCGTCGCCATGAACATGTACACTTCGTAC
CGCGCGTGTTTTTTACATCACCTCCTGGGAAAACCGCTAACTGGGGCGTC
CCGCCTTTTCCTTCGTTCGGCAGGGCTATCGAAGAAGCGAAACGTTTGCG
CTTCCGCCTAGAAGAAACAACCGCGGAACTAGAGAGCGCACGGAGCGCCG
TGTCGACCGCAAAGGCGGGCGGCATCAAGGAAGATGCCCCAGAACAAGAA
AGCGAGGTTCGTCTCAAGTAATTTAACGTATCGAGAGTCACAAGAGGATC
GGCGGGTGCAATAGAGGAGAACGTTTCCGAGTGTCTCGTGTCCACTTCAA
GCGACCATTTCGTATTTTTGCAGGCACGATTGCGCCTGATTTAATCGTGA
GCCTCATTCTGATCTCCAATTCGCGCGATTCACCACGGTCTATTCGGACG
GATCGCTGCTATATAGCCTTTTCTATCTAGCCTTTTCCCATCGCCTCTTG
CCCTTGAATTCGATGTGTTGGTAATTCAACGCCTGGACACCGCCCGTGCT
TAACATGTTTAATATTTATATATATAATCGCGCGCGCATTCGCTCGACTG
ATGACTGACGCCGCTAGGACCAAACTCTGTCGACTCAGTCGAGGATGGTT
CGTGAAGTCGTTCCGGGCCAAGTTCCAATCACCACTGAATCCGCGGACGA
ACTGGCATTCTTGCGCCACGCGACGGAGGAAGCCCTTCAAAAGACCCACT
CGTTGCAAGCTGAGCTCGACTTGGTGGTTCGGGAGACCGACGAACTGCGC
GAGGCGCTCAAAAGCGCGCGGGAATTACACCTCGCGGTGGTGGACAGTGC
AGTAGTGGCCAAGGCAGAGGCCGAGGCGAAGACCAAGTTGCAGTCATCCG
AACACGAGCGACAGATGGAGGAAAAGGACCTTGAGGTCAAATCTCTGAGG
ACTCGGTTGTATCTGTCGGAGGAGGCGTTGCGTGAGGCACAAAGGTCAAG
CGCGTCGATGGAGGCGATCTCACGGCGGGAGGCGTTATTGAAGACCGCGG
CTCTGGAAGAGACAAATGCTGAGATGGAGGCGCTCAAGGTCGCCGTGGCG
GAGGCAGTGGACGCGAGGGAGAAGGCTGAGTGTAATAATACGGAGGACAG
AGCCACCAGAAACGGAGAGCTCTCTTCCTTCCGGGAGAGTCTGGAGATGC
TACGCGCTGAGCTGGCGGGAGCGAAAGCGCGAGCAAGCTCCGCAGAGGAA
AAAGCGAAAACGGCTGCGGCTACAACTGCCTCGCGTATCGCCGGGCTCGA
AGCGCGGTTTGAAGGGGCCGAAGCGGTCCGAGACGCTGCGTTGAAAGCCG
CGGCCTCTAAATTATTTGATGGGCAGAAGCGCGATTCGGAACGCACGGCG
GCGCGAGAGGTCGATATGGTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig5045:5697..8270+

>mRNA_H-elongata_contig5045.12285.1 ID=mRNA_H-elongata_contig5045.12285.1|Name=mRNA_H-elongata_contig5045.12285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2724bp|location=Sequence derived from alignment at H-elongata_contig5045:5697..8270+ (Himanthalia elongata Himel1 dioecious)
AACATTAGGGAGGCCGCCGAGAGAGAGGGGGGAACGAAGCCAGTCGTCGC
CAACACCGAAAATGGTGACTGCCACAAAAAAAACTGTAAAGAGATTAAGT
TAGAGATCCCCATGCTGAAAGACGAGCAAGTAACAGCTCTCAACAGAAAG
ATGCTCGGGGCGCAAGATACCGTCAGTCGCTCGGAGGAGGAACGGAAGAT
GATGAAAGACGAAGCACGGGGCTTGCGGGACGAGCTCACCGCGGTAAAGG
GGCCCTTAGAGAACATTAGGGAGGCCGCCGAGAGAGAGGGGGGAACGAAG
CCAGTCGTCGCCAACACCGAAAATGGTGACTGCCACAAAAAAAACTGTAA
AGAGATTAAGTTAGAGATCCCCATGCTGAAAGACGAGCAAGTAACAGCTC
TCAACAGAAAGATGCTCGGGGCGCAAGATACCGTCAGTCGCTCGGAGGAG
GAACGGAAGATGATGAAAGACGAAGCACGGGGCTTGCGGGACGAGCTCAC
CGCGGTAAAGGGGCCCTTAGAGGAAACCATGGAGAGTGTAAGGCTAAAGT
TACGGGAGGCGCTGACTGAAAAGAATGAGGCAATCAAGGCCGGGGAGTTA
GGACGAGCCCGCTTTGAGGTGGTAGAGGCCGAAGCAGCAAGACAAGAAGC
CAGGGCGGTCACAGCGGAAGACCAGTTATCTAGGAAACCATGGAGAGTGT
AAGGCTAAAGTTACGGGAGGCGCTGACTGAAAAGAATGAGGCAATCAAGG
CCGGGGAGTTAGGACGAGCCCGCTTTGAGGTGGTAGAGGCCGAAGCAGCA
AGACAAGAAGCCAGGGCGGTCACAGCGGAAGACCAGTTATCTAGGGCTAT
CGAAGAAGCGAAACGTTTGCGCTTCCGCCTAGAAGAAACAACCGCGGAAC
TAGAGAGCGCACGGAGCGCCGTGTCGACCGCAAAGGCGGGCGGCATCAAG
GAAGATGCCCCAGAACAAGAAAGCGAGGGCTATCGAAGAAGCGAAACGTT
TGCGCTTCCGCCTAGAAGAAACAACCGCGGAACTAGAGAGCGCACGGAGC
GCCGTGTCGACCGCAAAGGCGGGCGGCATCAAGGAAGATGCCCCAGAACA
AGAAAGCGAGGACCAAACTCTGTCGACTCAGTCGAGGATGGTTCGTGAAG
TCGTTCCGGGCCAAGTTCCAATCACCACTGAATCCGCGGACGAACTGGCA
TTCTTGCGCCACGCGACGGAGGAAGCCCTTCAAAAGACCCACTCGTTGCA
AGCTGAGCTCGACTTGGTGGTTCGGGAGACCGACGAACTGCGCGAGGCGC
TCAAAAGCGCGCGGGAATTACACCTCGCGGTGGTGGACAGTGCAGTAGTG
GCCAAGGCAGAGGCCGAGGCGAAGACCAAGTTGCAGTCATCCGAACACGA
GCGACAGATGGAGGAAAAGGACCTTGAGGTCAAATCTCTGAGGACTCGGT
TGTATCTGTCGGAGGAGGCGTTGCGTGAGGCACAAAGGTCAAGCGCGTCG
ATGGAGGCGATCTCACGGCGGGAGGCGTTATTGAAGACCGCGGCTCTGGA
AGAGACAAATGCTGAGATGGAGGCGCTCAAGGTCGCCGTGGCGGAGGCAG
TGGACGCGAGGGAGAAGGCTGAGTGTAATAATACGGAGGACAGAGCCACC
AGAAACGGAGAGCTCTCTTCCTTCCGGGAGAGTCTGGAGATGCTACGCGC
TGAGCTGGCGGGAGCGAAAGCGCGAGCAAGCTCCGCAGAGGAAAAAGCGA
AAACGGCTGCGGCTACAACTGCCTCGCGTATCGCCGGGCTCGAAGCGCGG
TTTGAAGGGGCCGAAGCGGTCCGAGACGCTGCGTTGAAAGCCGCGGCCTC
TAAATTATTTGATGGGCAGAAGCGCGATTCGGAACGCACGGCGGCGCGAG
AGGTCGATATGGTGGTGGACCAAACTCTGTCGACTCAGTCGAGGATGGTT
CGTGAAGTCGTTCCGGGCCAAGTTCCAATCACCACTGAATCCGCGGACGA
ACTGGCATTCTTGCGCCACGCGACGGAGGAAGCCCTTCAAAAGACCCACT
CGTTGCAAGCTGAGCTCGACTTGGTGGTTCGGGAGACCGACGAACTGCGC
GAGGCGCTCAAAAGCGCGCGGGAATTACACCTCGCGGTGGTGGACAGTGC
AGTAGTGGCCAAGGCAGAGGCCGAGGCGAAGACCAAGTTGCAGTCATCCG
AACACGAGCGACAGATGGAGGAAAAGGACCTTGAGGTCAAATCTCTGAGG
ACTCGGTTGTATCTGTCGGAGGAGGCGTTGCGTGAGGCACAAAGGTCAAG
CGCGTCGATGGAGGCGATCTCACGGCGGGAGGCGTTATTGAAGACCGCGG
CTCTGGAAGAGACAAATGCTGAGATGGAGGCGCTCAAGGTCGCCGTGGCG
GAGGCAGTGGACGCGAGGGAGAAGGCTGAGTGTAATAATACGGAGGACAG
AGCCACCAGAAACGGAGAGCTCTCTTCCTTCCGGGAGAGTCTGGAGATGC
TACGCGCTGAGCTGGCGGGAGCGAAAGCGCGAGCAAGCTCCGCAGAGGAA
AAAGCGAAAACGGCTGCGGCTACAACTGCCTCGCGTATCGCCGGGCTCGA
AGCGCGGTTTGAAGGGGCCGAAGCGGTCCGAGACGCTGCGTTGAAAGCCG
CGGCCTCTAAATTATTTGATGGGCAGAAGCGCGATTCGGAACGCACGGCG
GCGCGAGAGGTCGATATGGTGGTG
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