mRNA_H-elongata_contig5032.12265.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5032.12265.1
Unique NamemRNA_H-elongata_contig5032.12265.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5032.12265.1 vs. uniprot
Match: R7U1D0_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U1D0_CAPTE)

HSP 1 Score: 63.2 bits (152), Expect = 1.160e-9
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 EEHYRRALTIFEKELDPHHPRVTRLLSDLAGFPFHPSSRFGFERQGQNDDAEELYKQAINIRERVQGPDHLDVAIDLINLAALLKSQ 261
            E H   A+   E+     HPRV   L+D+AG   +P ++ G++R    D AE+LY++A++IRE+  G DHL VA  L +L  LLK +
Sbjct: 1081 ETHLSHAMLSLERWYGKSHPRVADALNDMAGLLCNPRNKSGYDR----DQAEQLYRRALSIREKTFGNDHLLVATTLFHLGKLLKDK 1163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5032.12265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7U1D0_CAPTE1.160e-940.23Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5032contigH-elongata_contig5032:1066..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.6713858-CDS-H-elongata_contig5032:1065..12311622930827.6713858-CDS-H-elongata_contig5032:1065..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5032 1066..1231 -
1691679587.7043083-CDS-H-elongata_contig5032:1065..12311691679587.7043083-CDS-H-elongata_contig5032:1065..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5032 1066..1231 -
1622930827.6889334-CDS-H-elongata_contig5032:1491..15861622930827.6889334-CDS-H-elongata_contig5032:1491..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5032 1492..1586 -
1691679587.7168117-CDS-H-elongata_contig5032:1491..15861691679587.7168117-CDS-H-elongata_contig5032:1491..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5032 1492..1586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5032.12265.1prot_H-elongata_contig5032.12265.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5032 1066..1586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5032.12265.1

>prot_H-elongata_contig5032.12265.1 ID=prot_H-elongata_contig5032.12265.1|Name=mRNA_H-elongata_contig5032.12265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
EEHYRRALTIFEKELDPHHPRVTRLLSDLAGFPFHPSSRFGFERQGQNDD
AEELYKQAINIRERVQGPDHLDVAIDLINLAALLKSQ
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mRNA from alignment at H-elongata_contig5032:1066..1586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5032.12265.1 ID=mRNA_H-elongata_contig5032.12265.1|Name=mRNA_H-elongata_contig5032.12265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=521bp|location=Sequence derived from alignment at H-elongata_contig5032:1066..1586- (Himanthalia elongata Himel1 dioecious)
GAGGAACATTACAGGCGTGCCCTCACCATCTTCGAAAAAGAACTTGATCC
TCACCACCCACGAGTCACGAGGCTTTTGAGTGATCTGGCGGGGTTGTTAC
ATGTACAGGTGGTACTCTCTGGGCAGCTAAAAATACACGGATTATTGTCT
TAGCTGGGATCAATCGTGACCCCGACCCCGCAAAAAAATACCTGATTACG
TTAAGAAGGATCGAACGACCAGCATTAGGTCTATTTACCTCTACTATTCT
TGAGGAGCCACGGGGCTGGTCTAGGCATATTTGGTGCAACCCTTCGTTGC
ACATTTGTGCACCATCCTTGAGGAAGAGCGCTGTGTTGTTGAAAATCGAC
TCCAGCCCATTTCACCCTTCCTCACGCTTCGGTTTTGAACGGCAGGGCCA
GAATGACGACGCCGAAGAGCTTTATAAACAAGCTATTAACATTCGTGAAC
GGGTGCAAGGTCCTGACCACCTGGATGTGGCTATAGATCTGATCAACTTG
GCGGCGCTACTTAAGTCACAG
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Coding sequence (CDS) from alignment at H-elongata_contig5032:1066..1586-

>mRNA_H-elongata_contig5032.12265.1 ID=mRNA_H-elongata_contig5032.12265.1|Name=mRNA_H-elongata_contig5032.12265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig5032:1066..1586- (Himanthalia elongata Himel1 dioecious)
GAGGAACATTACAGGCGTGCCCTCACCATCTTCGAAAAAGAACTTGATCC
TCACCACCCACGAGTCACGAGGCTTTTGAGTGATCTGGCGGGGTTGAGGA
ACATTACAGGCGTGCCCTCACCATCTTCGAAAAAGAACTTGATCCTCACC
ACCCACGAGTCACGAGGCTTTTGAGTGATCTGGCGGGGTTCCCATTTCAC
CCTTCCTCACGCTTCGGTTTTGAACGGCAGGGCCAGAATGACGACGCCGA
AGAGCTTTATAAACAAGCTATTAACATTCGTGAACGGGTGCAAGGTCCTG
ACCACCTGGATGTGGCTATAGATCTGATCAACTTGGCGGCGCTACTTAAG
TCACAGCCCATTTCACCCTTCCTCACGCTTCGGTTTTGAACGGCAGGGCC
AGAATGACGACGCCGAAGAGCTTTATAAACAAGCTATTAACATTCGTGAA
CGGGTGCAAGGTCCTGACCACCTGGATGTGGCTATAGATCTGATCAACTT
GGCGGCGCTACTTAAGTCACAG
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