mRNA_H-elongata_contig5030.12260.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: D8LHX5_ECTSI (Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX5_ECTSI) HSP 1 Score: 295 bits (755), Expect = 2.440e-91 Identity = 144/184 (78.26%), Postives = 158/184 (85.87%), Query Frame = 1
Query: 1 KGCVLLNGAGRFRDREQEALAEAQKMSV-----------TIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSIGY 519
KGCV+LNGAGRFRDREQEAL E QK + IK GT++QRA+ RASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIR+PSLDPNAPEVFQRVI RTGGPGLTVD+LL+G+ +PLLLLWGELDPWIRPAAADKIQ LYP A R SVQAGHCPHDE+PEVVN+ALV WL++IGY
Sbjct: 254 KGCVMLNGAGRFRDREQEALLEVQKNAPPRPPFLLAWDEAIKYVGTFVQRAITRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPSLDPNAPEVFQRVISRTGGPGLTVDELLEGFTSPLLLLWGELDPWIRPAAADKIQGLYPEATRFSVQAGHCPHDEAPEVVNDALVSWLKTIGY 437
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S2EXP3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXP3_TRICV) HSP 1 Score: 200 bits (508), Expect = 3.150e-58 Identity = 105/171 (61.40%), Postives = 125/171 (73.10%), Query Frame = 1
Query: 7 CVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
CVLLN AGRFRD + A ++ + +++ IQR V+ ASF YTKQPARI+QVL QVYP + VD ELVESIR+PS DPNA EVF RVI + G GP VDDLL PLLL WGE DPWIRPAAADKIQALYP +KRVS+ AGHCPHDE+PE VN A+++++ I
Sbjct: 1 CVLLNAAGRFRDPDAPADDGTKEPNPFVEAVSKAIQRLVIAASFVYTKQPARIEQVLRQVYPINADMVDPELVESIRVPSTDPNAAEVFYRVITKNGSGPQTYVDDLLQTLDCPLLLAWGESDPWIRPAAADKIQALYPRSKRVSIDAGHCPHDEAPEAVNAAILDFMAEI 171
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A6U1NRJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NRJ5_9STRA) HSP 1 Score: 197 bits (502), Expect = 3.190e-54 Identity = 105/186 (56.45%), Postives = 125/186 (67.20%), Query Frame = 1
Query: 1 KGCVLLNGAGRF--------RDREQEALAEA------QKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGG-PGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
KGC+LLN AGRF EQ A EA Q + + G +QR V++ASFYYTKQP RIKQVL+QVY D +NVDD+LVESIR P+ +PNAPEVF RVI R GG P +V+ LL PLLLLWGE DPWIRPAAA KI +YP A+ V + AGHCPHDE P+ VN+A++EW I
Sbjct: 237 KGCILLNAAGRFDPPEDVLKAQEEQAATQEAGQAWPPQWYKDAVAALGQALQRGVIQASFYYTKQPLRIKQVLSQVYTDTKNVDDDLVESIRFPAENPNAPEVFYRVIRRNGGGPQTSVNTLLQQLSVPLLLLWGEQDPWIRPAAAQKIMEIYPSAEMVPLVAGHCPHDEVPQEVNQAILEWSAKI 422
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S1ZKC8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKC8_9STRA) HSP 1 Score: 193 bits (491), Expect = 2.260e-53 Identity = 106/174 (60.92%), Postives = 129/174 (74.14%), Query Frame = 1
Query: 4 GCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYK-TPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSIG 516
GCVLLN AGRF++ +A E + ++ I + T I+RAV++ SF YTKQPARI+QVL QVYP + NVD+ELVESIR PSLDPNA EVF RVI + G GP + VDDLL PL+L WGE DPWIRPAAADKIQALYP + RVS+ AGHCPHDE+PE VN A+ ++ +G
Sbjct: 183 GCVLLNAAGRFKN--PDAPPEKEPNAI-IDAIATLIKRAVIQLSFIYTKQPARIEQVLRQVYPINANNVDEELVESIRYPSLDPNAAEVFYRVITKNGSGPQVYVDDLLQDLNGIPLMLCWGENDPWIRPAAADKIQALYPSSLRVSIDAGHCPHDEAPEDVNLAVRNFMSQLG 353
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S2UMU3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMU3_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.160e-51 Identity = 100/173 (57.80%), Postives = 124/173 (71.68%), Query Frame = 1
Query: 4 GCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRN-VDDELVESIRIPSLDPNAPEVFQRVIMR--TGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
GC+LLN AG+F+D +E + E K ++S + IQRAV+ SF TKQPARI+QVL QVYP N VD ELV+SI++PS DPNA EVF RVI + +G P + VDDLL + PLLL WGE DPWIRPAAADKIQ LY ++RVS+ AGHCPHDESP+ VN A+ ++ I
Sbjct: 197 GCILLNAAGKFKDPTEEIIIEEPKNEF-VESIMSAIQRAVIAVSFVVTKQPARIEQVLRQVYPINANMVDQELVDSIQLPSQDPNAAEVFYRVIKKNSSGRPSVYVDDLLQRLECPLLLCWGEADPWIRPAAADKIQTLYTNSQRVSIPAGHCPHDESPDQVNSAIRNFINEI 368
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A1E7FKN7_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKN7_9STRA) HSP 1 Score: 181 bits (460), Expect = 2.310e-49 Identity = 97/171 (56.73%), Postives = 118/171 (69.01%), Query Frame = 1
Query: 4 GCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMR-TGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQS 510
G VLLN AG+F+D E + Q + +K + IQR V+ SF TKQPARIKQVL QVYP D NV+D+LVESIR PS DPNA EVF RVI + T G + VDD+L+ PLLL WGELDPWIRP ADKIQ LYP A R S+ AGHCP DE+P VN A+ +++++
Sbjct: 127 GVVLLNAAGQFKDPENPTEVKPQDTNGLVKFIKSSIQRLVIGGSFVVTKQPARIKQVLNQVYPVDNSNVNDKLVESIRFPSNDPNAAEVFFRVITKNTNGSAVYVDDVLEKLDCPLLLCWGELDPWIRPETADKIQKLYPRAIRASINAGHCPQDEAPTAVNAAIRDFMEN 297
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: B5YNN1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNN1_THAPS) HSP 1 Score: 178 bits (451), Expect = 5.660e-48 Identity = 94/173 (54.34%), Postives = 120/173 (69.36%), Query Frame = 1
Query: 1 KGCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
KGC+LLN AGRFRD E + + + +KS IQR V+ SF YTKQPARI Q+L VYP + NVD ELVESI+ P+LDPNA EVF RVI + G GP VDD+L + P+LL WGE DPWI+ AAADK++ L+ +SV AGHCPHDE+PE VN+A+++++ I
Sbjct: 149 KGCILLNAAGRFRDPEA-TVEDTATPNPIVKSVSAAIQRFVIACSFIYTKQPARITQILKNVYPINNANVDSELVESIQTPALDPNAAEVFYRVITKNGSGPQAYVDDILKEMECPVLLAWGESDPWIKSAAADKMERLH---AEISVDAGHCPHDENPEQVNKAILDFVDEI 317
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S2PTK7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PTK7_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.320e-45 Identity = 93/181 (51.38%), Postives = 118/181 (65.19%), Query Frame = 1
Query: 1 KGCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPP--------------AKRVSVQAGHCPHDESPEVVNEALV 495
+GC+LLN AGRFR E E + + +KS + QR V+ SF TKQPARI+Q+L VYP D NV+ ELVESIR+P+LDPNA EVF RVI + G GP +DD++ + P+LL WGE DPWIRPAAADK+Q L+ KRV++ AGHCPHDE+PE VN A++
Sbjct: 204 RGCILLNAAGRFRPEEGEEETPSDPNPI-VKSISSAFQRFVIACSFVITKQPARIEQILKSVYPSDSSNVNSELVESIRVPALDPNAAEVFYRVITKNGSGPQAFIDDIIKELECPVLLAWGEKDPWIRPAAADKMQMLHAEYHGKNVGGESGSKWIKRVNIDAGHCPHDEAPEAVNAAIL 383
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A2P6TI17_CHLSO (Chloroplastic isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TI17_CHLSO) HSP 1 Score: 171 bits (434), Expect = 1.460e-44 Identity = 91/179 (50.84%), Postives = 116/179 (64.80%), Query Frame = 1
Query: 1 KGCVLLNGAGRFRDREQEALAEA--------QKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
KG VLLN AGRF + +E+ EA S ++ GT ++RA + ASF +TKQPARI+QVL QVY RN+DD+LV SI +P+ DPNA EVF RVI G + LDG PL LLWGE DPW PA AD+IQ YP A R + +GHCPHD++PE+VNE L++WL ++
Sbjct: 226 KGVVLLNAAGRFEEAGEESSEEAAVATPEQQNLWSGLVEQVGTAVKRAAVFASFVFTKQPARIRQVLGQVYVSDRNLDDDLVRSISLPAQDPNAAEVFYRVITARGEAMNRLLAKLDGL--PLYLLWGEKDPWCVPARADQIQRYYPAATRTDINSGHCPHDDTPELVNERLLQWLSNL 402
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: K0RN28_THAOC (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RN28_THAOC) HSP 1 Score: 166 bits (421), Expect = 1.920e-44 Identity = 91/187 (48.66%), Postives = 116/187 (62.03%), Query Frame = 1
Query: 1 KGCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGGPGLT-VDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPP--------------AKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
+G VLLNGAG+FRD + EA++ + I+S IQR V+ SF Y KQP RI Q+LT VYP +VD ELV SI P+LDP+APEVF R+I G G VDDLL KTPLLL WG DPWIRPA ADKI+ L+ +RV + AGHCPHDE+P N+A++++ + +
Sbjct: 62 RGTVLLNGAGQFRDPDASPAEEAERPNPIIESVSAAIQRFVIACSFVYIKQPMRIAQILTSVYPVTAESVDPELVSSIHTPALDPDAPEVFFRLISGKGRGGQPLVDDLLRELKTPLLLAWGREDPWIRPAVADKIEVLHAEFHGENEGGSNGPSWLERVDIDAGHCPHDENPAAANKAILDFAEKV 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5030.12260.1 >prot_H-elongata_contig5030.12260.1 ID=prot_H-elongata_contig5030.12260.1|Name=mRNA_H-elongata_contig5030.12260.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp MSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVEback to top mRNA from alignment at H-elongata_contig5030:480..3956- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5030.12260.1 ID=mRNA_H-elongata_contig5030.12260.1|Name=mRNA_H-elongata_contig5030.12260.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3477bp|location=Sequence derived from alignment at H-elongata_contig5030:480..3956- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5030:480..3956- >mRNA_H-elongata_contig5030.12260.1 ID=mRNA_H-elongata_contig5030.12260.1|Name=mRNA_H-elongata_contig5030.12260.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig5030:480..3956- (Himanthalia elongata Himel1 dioecious)back to top |