mRNA_H-elongata_contig5030.12260.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5030.12260.1
Unique NamemRNA_H-elongata_contig5030.12260.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: D8LHX5_ECTSI (Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX5_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 2.440e-91
Identity = 144/184 (78.26%), Postives = 158/184 (85.87%), Query Frame = 1
Query:    1 KGCVLLNGAGRFRDREQEALAEAQKMSV-----------TIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSIGY 519
            KGCV+LNGAGRFRDREQEAL E QK +             IK  GT++QRA+ RASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIR+PSLDPNAPEVFQRVI RTGGPGLTVD+LL+G+ +PLLLLWGELDPWIRPAAADKIQ LYP A R SVQAGHCPHDE+PEVVN+ALV WL++IGY
Sbjct:  254 KGCVMLNGAGRFRDREQEALLEVQKNAPPRPPFLLAWDEAIKYVGTFVQRAITRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPSLDPNAPEVFQRVISRTGGPGLTVDELLEGFTSPLLLLWGELDPWIRPAAADKIQGLYPEATRFSVQAGHCPHDEAPEVVNDALVSWLKTIGY 437          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S2EXP3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXP3_TRICV)

HSP 1 Score: 200 bits (508), Expect = 3.150e-58
Identity = 105/171 (61.40%), Postives = 125/171 (73.10%), Query Frame = 1
Query:    7 CVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
            CVLLN AGRFRD +  A    ++ +  +++    IQR V+ ASF YTKQPARI+QVL QVYP +   VD ELVESIR+PS DPNA EVF RVI + G GP   VDDLL     PLLL WGE DPWIRPAAADKIQALYP +KRVS+ AGHCPHDE+PE VN A+++++  I
Sbjct:    1 CVLLNAAGRFRDPDAPADDGTKEPNPFVEAVSKAIQRLVIAASFVYTKQPARIEQVLRQVYPINADMVDPELVESIRVPSTDPNAAEVFYRVITKNGSGPQTYVDDLLQTLDCPLLLAWGESDPWIRPAAADKIQALYPRSKRVSIDAGHCPHDEAPEAVNAAILDFMAEI 171          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A6U1NRJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NRJ5_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.190e-54
Identity = 105/186 (56.45%), Postives = 125/186 (67.20%), Query Frame = 1
Query:    1 KGCVLLNGAGRF--------RDREQEALAEA------QKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGG-PGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
            KGC+LLN AGRF           EQ A  EA      Q     + + G  +QR V++ASFYYTKQP RIKQVL+QVY D +NVDD+LVESIR P+ +PNAPEVF RVI R GG P  +V+ LL     PLLLLWGE DPWIRPAAA KI  +YP A+ V + AGHCPHDE P+ VN+A++EW   I
Sbjct:  237 KGCILLNAAGRFDPPEDVLKAQEEQAATQEAGQAWPPQWYKDAVAALGQALQRGVIQASFYYTKQPLRIKQVLSQVYTDTKNVDDDLVESIRFPAENPNAPEVFYRVIRRNGGGPQTSVNTLLQQLSVPLLLLWGEQDPWIRPAAAQKIMEIYPSAEMVPLVAGHCPHDEVPQEVNQAILEWSAKI 422          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S1ZKC8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKC8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.260e-53
Identity = 106/174 (60.92%), Postives = 129/174 (74.14%), Query Frame = 1
Query:    4 GCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYK-TPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSIG 516
            GCVLLN AGRF++   +A  E +  ++ I +  T I+RAV++ SF YTKQPARI+QVL QVYP +  NVD+ELVESIR PSLDPNA EVF RVI + G GP + VDDLL      PL+L WGE DPWIRPAAADKIQALYP + RVS+ AGHCPHDE+PE VN A+  ++  +G
Sbjct:  183 GCVLLNAAGRFKN--PDAPPEKEPNAI-IDAIATLIKRAVIQLSFIYTKQPARIEQVLRQVYPINANNVDEELVESIRYPSLDPNAAEVFYRVITKNGSGPQVYVDDLLQDLNGIPLMLCWGENDPWIRPAAADKIQALYPSSLRVSIDAGHCPHDEAPEDVNLAVRNFMSQLG 353          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S2UMU3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMU3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.160e-51
Identity = 100/173 (57.80%), Postives = 124/173 (71.68%), Query Frame = 1
Query:    4 GCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRN-VDDELVESIRIPSLDPNAPEVFQRVIMR--TGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
            GC+LLN AG+F+D  +E + E  K    ++S  + IQRAV+  SF  TKQPARI+QVL QVYP   N VD ELV+SI++PS DPNA EVF RVI +  +G P + VDDLL   + PLLL WGE DPWIRPAAADKIQ LY  ++RVS+ AGHCPHDESP+ VN A+  ++  I
Sbjct:  197 GCILLNAAGKFKDPTEEIIIEEPKNEF-VESIMSAIQRAVIAVSFVVTKQPARIEQVLRQVYPINANMVDQELVDSIQLPSQDPNAAEVFYRVIKKNSSGRPSVYVDDLLQRLECPLLLCWGEADPWIRPAAADKIQTLYTNSQRVSIPAGHCPHDESPDQVNSAIRNFINEI 368          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A1E7FKN7_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKN7_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.310e-49
Identity = 97/171 (56.73%), Postives = 118/171 (69.01%), Query Frame = 1
Query:    4 GCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMR-TGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQS 510
            G VLLN AG+F+D E     + Q  +  +K   + IQR V+  SF  TKQPARIKQVL QVYP D  NV+D+LVESIR PS DPNA EVF RVI + T G  + VDD+L+    PLLL WGELDPWIRP  ADKIQ LYP A R S+ AGHCP DE+P  VN A+ +++++
Sbjct:  127 GVVLLNAAGQFKDPENPTEVKPQDTNGLVKFIKSSIQRLVIGGSFVVTKQPARIKQVLNQVYPVDNSNVNDKLVESIRFPSNDPNAAEVFFRVITKNTNGSAVYVDDVLEKLDCPLLLCWGELDPWIRPETADKIQKLYPRAIRASINAGHCPQDEAPTAVNAAIRDFMEN 297          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: B5YNN1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNN1_THAPS)

HSP 1 Score: 178 bits (451), Expect = 5.660e-48
Identity = 94/173 (54.34%), Postives = 120/173 (69.36%), Query Frame = 1
Query:    1 KGCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
            KGC+LLN AGRFRD E   + +    +  +KS    IQR V+  SF YTKQPARI Q+L  VYP +  NVD ELVESI+ P+LDPNA EVF RVI + G GP   VDD+L   + P+LL WGE DPWI+ AAADK++ L+     +SV AGHCPHDE+PE VN+A+++++  I
Sbjct:  149 KGCILLNAAGRFRDPEA-TVEDTATPNPIVKSVSAAIQRFVIACSFIYTKQPARITQILKNVYPINNANVDSELVESIQTPALDPNAAEVFYRVITKNGSGPQAYVDDILKEMECPVLLAWGESDPWIKSAAADKMERLH---AEISVDAGHCPHDENPEQVNKAILDFVDEI 317          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A7S2PTK7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PTK7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.320e-45
Identity = 93/181 (51.38%), Postives = 118/181 (65.19%), Query Frame = 1
Query:    1 KGCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTG-GPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPP--------------AKRVSVQAGHCPHDESPEVVNEALV 495
            +GC+LLN AGRFR  E E    +    + +KS  +  QR V+  SF  TKQPARI+Q+L  VYP D  NV+ ELVESIR+P+LDPNA EVF RVI + G GP   +DD++   + P+LL WGE DPWIRPAAADK+Q L+                 KRV++ AGHCPHDE+PE VN A++
Sbjct:  204 RGCILLNAAGRFRPEEGEEETPSDPNPI-VKSISSAFQRFVIACSFVITKQPARIEQILKSVYPSDSSNVNSELVESIRVPALDPNAAEVFYRVITKNGSGPQAFIDDIIKELECPVLLAWGEKDPWIRPAAADKMQMLHAEYHGKNVGGESGSKWIKRVNIDAGHCPHDEAPEAVNAAIL 383          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: A0A2P6TI17_CHLSO (Chloroplastic isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TI17_CHLSO)

HSP 1 Score: 171 bits (434), Expect = 1.460e-44
Identity = 91/179 (50.84%), Postives = 116/179 (64.80%), Query Frame = 1
Query:    1 KGCVLLNGAGRFRDREQEALAEA--------QKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGGPGLTVDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
            KG VLLN AGRF +  +E+  EA           S  ++  GT ++RA + ASF +TKQPARI+QVL QVY   RN+DD+LV SI +P+ DPNA EVF RVI   G     +   LDG   PL LLWGE DPW  PA AD+IQ  YP A R  + +GHCPHD++PE+VNE L++WL ++
Sbjct:  226 KGVVLLNAAGRFEEAGEESSEEAAVATPEQQNLWSGLVEQVGTAVKRAAVFASFVFTKQPARIRQVLGQVYVSDRNLDDDLVRSISLPAQDPNAAEVFYRVITARGEAMNRLLAKLDGL--PLYLLWGEKDPWCVPARADQIQRYYPAATRTDINSGHCPHDDTPELVNERLLQWLSNL 402          
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Match: K0RN28_THAOC (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RN28_THAOC)

HSP 1 Score: 166 bits (421), Expect = 1.920e-44
Identity = 91/187 (48.66%), Postives = 116/187 (62.03%), Query Frame = 1
Query:    1 KGCVLLNGAGRFRDREQEALAEAQKMSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYP-DPRNVDDELVESIRIPSLDPNAPEVFQRVIMRTGGPGLT-VDDLLDGYKTPLLLLWGELDPWIRPAAADKIQALYPP--------------AKRVSVQAGHCPHDESPEVVNEALVEWLQSI 513
            +G VLLNGAG+FRD +     EA++ +  I+S    IQR V+  SF Y KQP RI Q+LT VYP    +VD ELV SI  P+LDP+APEVF R+I   G  G   VDDLL   KTPLLL WG  DPWIRPA ADKI+ L+                 +RV + AGHCPHDE+P   N+A++++ + +
Sbjct:   62 RGTVLLNGAGQFRDPDASPAEEAERPNPIIESVSAAIQRFVIACSFVYIKQPMRIAQILTSVYPVTAESVDPELVSSIHTPALDPDAPEVFFRLISGKGRGGQPLVDDLLRELKTPLLLAWGREDPWIRPAVADKIEVLHAEFHGENEGGSNGPSWLERVDIDAGHCPHDENPAAANKAILDFAEKV 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5030.12260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX5_ECTSI2.440e-9178.26Predicted hydrolases or acyltransferases (Alpha/be... [more]
A0A7S2EXP3_TRICV3.150e-5861.40Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U1NRJ5_9STRA3.190e-5456.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZKC8_9STRA2.260e-5360.92Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2UMU3_9STRA2.160e-5157.80Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1E7FKN7_9STRA2.310e-4956.73Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylind... [more]
B5YNN1_THAPS5.660e-4854.34Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2PTK7_9STRA1.320e-4551.38Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2P6TI17_CHLSO1.460e-4450.84Chloroplastic isoform X2 n=1 Tax=Chlorella sorokin... [more]
K0RN28_THAOC1.920e-4448.66AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5030contigH-elongata_contig5030:480..3956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.7
Seed ortholog evalue1e-67
Seed eggNOG ortholog2880.D8LHX5
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionEpoxide hydrolase-like
Ec32 orthologEc-18_000850.1
Exons6
Model size1562
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5030.12260.1prot_H-elongata_contig5030.12260.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5030 1520..3881 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.9776852-UTR-H-elongata_contig5030:479..15191622930826.9776852-UTR-H-elongata_contig5030:479..1519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5030 480..1519 -
1691679587.3463385-UTR-H-elongata_contig5030:479..15191691679587.3463385-UTR-H-elongata_contig5030:479..1519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5030 480..1519 -
1622930827.1014447-UTR-H-elongata_contig5030:3881..39561622930827.1014447-UTR-H-elongata_contig5030:3881..3956Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5030 3882..3956 -
1691679587.4309192-UTR-H-elongata_contig5030:3881..39561691679587.4309192-UTR-H-elongata_contig5030:3881..3956Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5030 3882..3956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.9941568-CDS-H-elongata_contig5030:1519..15891622930826.9941568-CDS-H-elongata_contig5030:1519..1589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 1520..1589 -
1691679587.3590457-CDS-H-elongata_contig5030:1519..15891691679587.3590457-CDS-H-elongata_contig5030:1519..1589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 1520..1589 -
1622930827.0210829-CDS-H-elongata_contig5030:2153..22001622930827.0210829-CDS-H-elongata_contig5030:2153..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 2154..2200 -
1691679587.3712559-CDS-H-elongata_contig5030:2153..22001691679587.3712559-CDS-H-elongata_contig5030:2153..2200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 2154..2200 -
1622930827.0406427-CDS-H-elongata_contig5030:2729..28701622930827.0406427-CDS-H-elongata_contig5030:2729..2870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 2730..2870 -
1691679587.3819711-CDS-H-elongata_contig5030:2729..28701691679587.3819711-CDS-H-elongata_contig5030:2729..2870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 2730..2870 -
1622930827.0569868-CDS-H-elongata_contig5030:3074..31671622930827.0569868-CDS-H-elongata_contig5030:3074..3167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 3075..3167 -
1691679587.392872-CDS-H-elongata_contig5030:3074..31671691679587.392872-CDS-H-elongata_contig5030:3074..3167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 3075..3167 -
1622930827.0715728-CDS-H-elongata_contig5030:3439..35251622930827.0715728-CDS-H-elongata_contig5030:3439..3525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 3440..3525 -
1691679587.4103975-CDS-H-elongata_contig5030:3439..35251691679587.4103975-CDS-H-elongata_contig5030:3439..3525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 3440..3525 -
1622930827.0859227-CDS-H-elongata_contig5030:3871..38811622930827.0859227-CDS-H-elongata_contig5030:3871..3881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 3872..3881 -
1691679587.4216266-CDS-H-elongata_contig5030:3871..38811691679587.4216266-CDS-H-elongata_contig5030:3871..3881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5030 3872..3881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5030.12260.1

>prot_H-elongata_contig5030.12260.1 ID=prot_H-elongata_contig5030.12260.1|Name=mRNA_H-elongata_contig5030.12260.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MSVTIKSAGTYIQRAVMRASFYYTKQPARIKQVLTQVYPDPRNVDDELVE
SIRIPSLDPNAPEVFQRVIMRTGGPGLTVDDLLDGYKTPLLLLWGELDPW
IRPAAADKIQALYPPAKRVSVQAGHCPHDESPEVVNEALVEWLQSIGY*
back to top

mRNA from alignment at H-elongata_contig5030:480..3956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5030.12260.1 ID=mRNA_H-elongata_contig5030.12260.1|Name=mRNA_H-elongata_contig5030.12260.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3477bp|location=Sequence derived from alignment at H-elongata_contig5030:480..3956- (Himanthalia elongata Himel1 dioecious)
AAGGGCTGCGTATTGCTGAACGGTGCTGGAAGGTTCCGCGACCGCGAGCA GGAGGCCCTCGCGGAAGCGCAGAAGATGAGCGTAAGTGACCACGGCTCGG GCTCTGTGCAGAGCTGGTCCATTTTGTCTTGCCTACGCCACCCGGCCACG ATCATTTTTTTTAAATGCGTTAAGAACAGCTGTACTTCCTACCACCAACT TGCGATCATCTCGGTAGGAGCACCCTTGATAGGGAAAGCGCCGGCTCTGC GGAGAAATGTGGTTCTCCCCATACATGTATACATTTCGCACGCGGGAGAC GGTGATACGGGGGGGTGAGAAGAATTCAAGTATTCTTGCTTACTGTGACT CGGATCATGTGACCTAGCGCGCGATCCCCCCGACGCAGAACGCTCCCGCA AAGGCACCTTTCCTGTTGGCGTGGGACGAAGCAATCAAGTCCGCGGGTAC GTATATCCAGAGGGCTGTCATGCGCGCGTCCTTTTACTACACGAAGCAGC CCGCGCGTATCAAACAGGTCAGCAACGCGATTCTCTCTCTGCCTCGCCGC CAAACACCGAGCTGAGATCGAGAGGGGCGTTCTCCCGTTTCCATTAGGCT GCTGAAATATGATATATTGGGGGACAATATTGTATATTATTTACGATATG TGGTTCCCTGCTGAGGCTCTTGCTCCTCGTGGGCACCTTCGGAACCTTTC GTCGCATCATGTCCATGCGTCTGCCACCGAGGCATTCCCTCGGCCGGAGT CGTTCTTCACTTCGCCACACACGTCGCACGCTTGCGCAGGTTCTCACGCA GGTTTACCCAGACCCCCGGAACGTGGACGATGAACTCGTGGAAAGTATAC GCATCCCGTCCCTAGACCCAAACGCTCCCGAGGTACAGTGCGCGAGCCAG AATCGGAATCCAATCCAATTATTGGGGGGGAAATGGGGCAGGGGGGATCC GCTTCGTTAGGTCCCCGCTCGACGTCACGGAGATCTAAGGTTTCGAATAT TCAAGAAAAATACGCTTTGACTCTTTTCGTAAAAGCCACCAACCCATGAT GACGCGTTATTTCGACTGCATTTCTGTTGGAGGCAGGTTTTCCAGCGCGT GATTATGAGAACAGGGGGCCCGGGGCTGACCGTTGACGACCTCCTCGATG GGTACAAAACGCCATTGTTGTTGCTGTGGGGAGAGCTCGACCCTTGGATT CGACCAGCAGCCGCGGACAAGATCCAGGTGTACCCCCCCCTCCCCGCTGT TCGCGCGAAGGATGACAGTGCCGCCGAAATGGTCGCTGGCATTAGCTTTA TTTGAAACAGACAAACCGACCCTTGGGGACACTCGAGGGCTTCCTTGCCG CGGTGAACACACGAAAGAAGATCCGAGCGTACAAAACAAAACGGTTGATG TGCTGCCAAAAGGCATGGTCTGCGTGCCCACGCCGCGGGACGCCCACTAT ATGCGCATAGTTCCTGTGAAAACCCAATGTTGCGGTGCTAGTTTCGCATG CCTGGAGCGATGAAACGTGGGTCGGTGCACGGCCGAGCAGCTCGCCGGCG TGGGTAATCACGCGGACCGCCATTCGACCTTGCAGCACACCATCGATCCT CGAGTTGCTCATCCTGTTGATCACTACACTGCGGTCACTTTTCATCGGCT AACACGCCCCCGGTTCACTTCTCCGCGTTGATCGACGACCGCCTATCCCC GCCCCCCCTTCTTCGACTGCCTGAATAACGGTGCTATATGTGACTCCCAT ATCCAGGCGCTATACCCCCCGGCAAAACGCGTTAGCGTACAGGCTGGACA CTGGTGAGAGACAAGAATAAGTAAGTAGACTAGAGGTGTACTAAAGTAGG AATTATGCTTTAGGTGCTTCCATTGCCGAGTATTTAGTTTCGAAACGCGT CGATCATCAGCGGAAAAAAACGGTTCACAGCGGCTGTCAGATCAGCCACG CCCATTAACGACCGATGTAATATCGTCGGTTGGTTGCACGTCACCCGCGC GCATGGTCGCTGTCTGTTTCCTTTCCCGCACGAGCCACTCTGGAGGCGGC CTTAAAGGCACCTTTTGCGCAAAAGCCAGCGGTAGGCGACTTGAGACTCA GCCGCGGCTAGCTTACAAACCTTCATGTGTCTCTTTAAATGTTTAGAACT TCAGTACGTAGCTGACGTATTTTTCCCCATGACTTGTCCGCTATGATTGA CCCGAGTAACACACCTCCCAACATATTTTAACACCTGAGGTGTTTTGCTC TGCTTGCCACCGCCGTTAACCTTTATTAATGTCTTCGGTATGCCTGCGCC CCCCCCCCTTCCGCTTCCCGCCTCCTACTGGGTTTTCCTTCACCCGGGAA AACATGTGCTCGTGCAGTCCCCATGACGAATCGCCCGAGGTTGTGAACGA AGCTCTCGTGGAATGGCTCCAGTCGATCGGTTATTAAGCGTTCAACGGAA AGCATTGGCAAGTGATAATCTCTCTTCGGTGTTGGAGCGTTATTCGACAC GTAGACAAGAGCAGACTTTTAACAGAGGAGGATGGTCTTCGCCGAGCTAA GTTTTGTACAAACAGGCACAAGTTGTTATCTCCTCCGTACCGCAAGCGGC ATTGAAATGAAGACTCAATTGGCAAAGTAGCCAATGGGAAAACCACAACA GTGGTGCCAAGAAGGCGTGGATGTTCGGAGGGTTTTAGTCATGGCTGCTC ACATGACCGACAATTACACATGACTTTTCACATGACCAGTGCCAGAACGG GTTTGCGGTTCGGTACTGTGATTTTTTTCTTCTTCTCAAAACCGGCACTG GTTGGGCACTGTGAGATTTTTCGTCTCCAAAACCGGTACTGGTTAGGCAC TGTGATATTTTTGCCGGTACTGGTTGGGCACTGTCAGATTTCGTACTACA CTGCCGGTCATGTGGAAATGGTCGGTCACGTGAATTTCTTCTTGGTTCTT TCAATTTTTGGAATTCTTCCGGAAATTGCACTTTTTGAGGAATTGTTTTC CATTTTTATCAATTTGTATTAAACCACGCAAACCGGCAAGACACGTAAGG GGGCGCCACGCCGGTTTGCAAATACTCCCCCCTTAAAGGGAGCTGTTCAG CATACCACGAGCGGGATTGGCCACCATGTAGAGTAGTTTTTTTCGGATTG GCAACCAATACGCTGAATGTGAGAAACAACAAAAACAGTATATTTTAATA TAAATAGGTGTAGTATACATATAATATTCTCGGGCGGAAGGAAGTTGAGG TGTTCTTTCCAGGGTGTTTGTTTATCTTAAAAACAGACCAACTCATTCAA CCCCTTCGAACATCCACACCTTTGCTGCACCAGGAGTCTCGAGGTCAGAT GAAGTCCAGGGGAGACCAATGAGATCGTCAGGTTCGGGTGTGTACATTAC TATTACCTATTGAGCCAAAATCGTCACATTGATGATTGATTACTACATGG ATGTTCCCCAATGGTTAAACGCGTCGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5030:480..3956-

>mRNA_H-elongata_contig5030.12260.1 ID=mRNA_H-elongata_contig5030.12260.1|Name=mRNA_H-elongata_contig5030.12260.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig5030:480..3956- (Himanthalia elongata Himel1 dioecious)
ATGAGCGTAAATGAGCGTAACAATCAAGTCCGCGGGTACGTATATCCAGA
GGGCTGTCATGCGCGCGTCCTTTTACTACACGAAGCAGCCCGCGCGTATC
AAACAGCAATCAAGTCCGCGGGTACGTATATCCAGAGGGCTGTCATGCGC
GCGTCCTTTTACTACACGAAGCAGCCCGCGCGTATCAAACAGGTTCTCAC
GCAGGTTTACCCAGACCCCCGGAACGTGGACGATGAACTCGTGGAAAGTA
TACGCATCCCGTCCCTAGACCCAAACGCTCCCGAGGTTCTCACGCAGGTT
TACCCAGACCCCCGGAACGTGGACGATGAACTCGTGGAAAGTATACGCAT
CCCGTCCCTAGACCCAAACGCTCCCGAGGTTTTCCAGCGCGTGATTATGA
GAACAGGGGGCCCGGGGCTGACCGTTGACGACCTCCTCGATGGGTACAAA
ACGCCATTGTTGTTGCTGTGGGGAGAGCTCGACCCTTGGATTCGACCAGC
AGCCGCGGACAAGATCCAGGTTTTCCAGCGCGTGATTATGAGAACAGGGG
GCCCGGGGCTGACCGTTGACGACCTCCTCGATGGGTACAAAACGCCATTG
TTGTTGCTGTGGGGAGAGCTCGACCCTTGGATTCGACCAGCAGCCGCGGA
CAAGATCCAGGCGCTATACCCCCCGGCAAAACGCGTTAGCGTACAGGCTG
GACACTGGCGCTATACCCCCCGGCAAAACGCGTTAGCGTACAGGCTGGAC
ACTGTCCCCATGACGAATCGCCCGAGGTTGTGAACGAAGCTCTCGTGGAA
TGGCTCCAGTCGATCGGTTATTAATCCCCATGACGAATCGCCCGAGGTTG
TGAACGAAGCTCTCGTGGAATGGCTCCAGTCGATCGGTTATTAA
back to top