mRNA_H-elongata_contig50252.12254.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50252.12254.1
Unique NamemRNA_H-elongata_contig50252.12254.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50252.12254.1 vs. uniprot
Match: A0A6H5JMX7_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.440e-12
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 DVGEHILGSKSIA----DIEPTDYSELTETAYEQDGDDTSFSFSRNTTPQTPDEEKLVIPNVVGTPIYVIWAKGMDNTFGYHGNST 249
            +V E  L ++S      D +  D  EL++  + QDGDDT+FSF+RNTTP +    K  +P   G+ I++IWA G DN FGYHG S+
Sbjct:   96 EVSEQFLDAQSEVVLDRDEDDRDTDELSDIEFSQDGDDTTFSFTRNTTPDS--SLKQTLPEEPGSQIHLIWALGNDNAFGYHGQSS 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50252.12254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMX7_9PHAE4.440e-1244.19DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50252contigH-elongata_contig50252:1614..2587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_002550.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDOMON domain
Ec32 orthologEc-10_000400.1
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.3900104-CDS-H-elongata_contig50252:1613..18291622930826.3900104-CDS-H-elongata_contig50252:1613..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50252 1614..1829 -
1691679587.108986-CDS-H-elongata_contig50252:1613..18291691679587.108986-CDS-H-elongata_contig50252:1613..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50252 1614..1829 -
1622930826.4059308-CDS-H-elongata_contig50252:2554..25871622930826.4059308-CDS-H-elongata_contig50252:2554..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50252 2555..2587 -
1691679587.1219957-CDS-H-elongata_contig50252:2554..25871691679587.1219957-CDS-H-elongata_contig50252:2554..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50252 2555..2587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50252.12254.1prot_H-elongata_contig50252.12254.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50252 1614..2587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50252.12254.1

>prot_H-elongata_contig50252.12254.1 ID=prot_H-elongata_contig50252.12254.1|Name=mRNA_H-elongata_contig50252.12254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
NDVGEHILGSKSIADIEPTDYSELTETAYEQDGDDTSFSFSRNTTPQTPD
EEKLVIPNVVGTPIYVIWAKGMDNTFGYHGNST
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mRNA from alignment at H-elongata_contig50252:1614..2587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50252.12254.1 ID=mRNA_H-elongata_contig50252.12254.1|Name=mRNA_H-elongata_contig50252.12254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=974bp|location=Sequence derived from alignment at H-elongata_contig50252:1614..2587- (Himanthalia elongata Himel1 dioecious)
AATGACGTGGGGGAGCACATCTTGGGCTCTAAGGTATATCTTTTTTCGAG
GTGGTATTATAACCATCACCACACGGAAAGATGACTGACTGTGGATGTGC
ATGGTCCGTAGCGGAACTCGGTCGATCGAACGGACGAACGAACGAACATT
TGTTAAAAGCGATGGATAGCTGTGGGTCATGTGTCGATGGTTGATGGGCC
TTTCCACGGTAAACGTGAAAACATTATGAGCAAAACTGAGCCATTGGTTG
AGAGCATGGAGGGAGGGGTTCCGACTTTTCCCGATTGCGGTGAAGATGAG
TACCCTTAGACGTGTGGTGTGATGTGACGTGGCGTAAAACGGGGATGGGT
TGAAATATCTTGTATTTTGTTTCAATAGAACCCAAAGGTGAGACGGGCAG
AGTCTCGGTCGTTCAATGCCCCAATTGACAAGGAGTGAGACCAAACAAAT
AGGAATGGACTCCCCTTGAAGCCCGTGGTCACCGTTTATTTGTGGTGCTA
GAATGAAATGGAATGGAAGACCGCCAGCGCCATCTAGTGGTCGTCATTCC
TTCGATGTGAATTTTATGTCCGCTAGCGGTACCTTTTAGATGAGATAGGA
AATACGCCAATGTTCGAGAGGGCCTAAATCGACGACCTCGAATCTTTGGA
CCCATAACGTGTTGTAGCGTTTTTTTACCCCACGCTGCAAGCGCTTTCAT
GGCGGTTCAAGTCGTGATATTGCGTTGAACGCGCTCGCCCGCTTCGCTCT
CGTCGCAGTCTATCGCGGATATTGAACCCACCGACTACTCGGAGCTGACG
GAGACGGCGTACGAGCAAGATGGGGATGATACGTCATTTTCGTTCTCTCG
CAATACCACTCCGCAAACACCGGATGAAGAGAAGCTCGTAATCCCAAACG
TGGTCGGGACTCCGATCTACGTTATCTGGGCCAAGGGGATGGACAACACC
TTCGGCTACCACGGTAATTCGACC
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Coding sequence (CDS) from alignment at H-elongata_contig50252:1614..2587-

>mRNA_H-elongata_contig50252.12254.1 ID=mRNA_H-elongata_contig50252.12254.1|Name=mRNA_H-elongata_contig50252.12254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig50252:1614..2587- (Himanthalia elongata Himel1 dioecious)
AATGACGTGGGGGAGCACATCTTGGGCTCTAAGAATGACGTGGGGGAGCA
CATCTTGGGCTCTAAGTCTATCGCGGATATTGAACCCACCGACTACTCGG
AGCTGACGGAGACGGCGTACGAGCAAGATGGGGATGATACGTCATTTTCG
TTCTCTCGCAATACCACTCCGCAAACACCGGATGAAGAGAAGCTCGTAAT
CCCAAACGTGGTCGGGACTCCGATCTACGTTATCTGGGCCAAGGGGATGG
ACAACACCTTCGGCTACCACGGTAATTCGACCTCTATCGCGGATATTGAA
CCCACCGACTACTCGGAGCTGACGGAGACGGCGTACGAGCAAGATGGGGA
TGATACGTCATTTTCGTTCTCTCGCAATACCACTCCGCAAACACCGGATG
AAGAGAAGCTCGTAATCCCAAACGTGGTCGGGACTCCGATCTACGTTATC
TGGGCCAAGGGGATGGACAACACCTTCGGCTACCACGGTAATTCGACC
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