mRNA_H-elongata_contig50242.12252.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50242.12252.1
Unique NamemRNA_H-elongata_contig50242.12252.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50242.12252.1 vs. uniprot
Match: D8LDX3_ECTSI (Exocyst subunit Exo70 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX3_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 7.820e-90
Identity = 149/230 (64.78%), Postives = 184/230 (80.00%), Query Frame = 1 
Query:    1 LKEGDVPSDVVGSLLEMSDAMHKGSYSLQDILKVG-DVSGSKSDKSGHRKR--------PSSSNGRGGGNKATEALAAVRRRLSQACLHTITNMAGAVSNDPKLRRHLPDDGSVHPLASNVLLGVKRLMRFRRGYEDLVKDAQLPWDPTDVRAARPFNSNSSSPVRAEGTTAAARACPKFTVLVNHLVKTLFVNLTEKSSSYPTATLPGAALRDIFLVNNAEYVLTKAKV 663
            +K+GD+P+D+V +L+EMSDA+HKGSYSLQDILKVG D SGSK D  G++ R        P S+  RG  NKAT+ALAAV+RRLS+ACL T  ++A AVS DPKLRRH+PD+G+VHPL+SNVL G+KR+MRFRRGYE+LV+ AQ+PWDP      R    + +SPVR  G T+A+ ACP+FT LVNHL+KTLFVNLTEKS SYPTATLPGAALR++FL+NNAEYVL  AK+
Sbjct:  369 VKDGDIPADIVVALMEMSDALHKGSYSLQDILKVGGDDSGSKGDDRGYQSRRGSVVYASPDSAARRGRTNKATDALAAVQRRLSRACLQTFADLAEAVSTDPKLRRHVPDNGAVHPLSSNVLRGIKRVMRFRRGYEELVQGAQMPWDPESAPGDRTSRGSKNSPVRERGATSASNACPRFTTLVNHLIKTLFVNLTEKSGSYPTATLPGAALRELFLLNNAEYVLANAKM 598
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BLAST of mRNA_H-elongata_contig50242.12252.1 vs. uniprot
Match: A0A835YN31_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN31_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.930e-28
Identity = 78/217 (35.94%), Postives = 117/217 (53.92%), Query Frame = 1 
Query:   40 LLEMSDAMHKGSYSLQDILKVGDVSGSKSDKSGHRKRPSSSNGRGGGNKATEALAAVRRRLSQACLHTITNMAGAVSNDPKLRRHLPDDGSVHPLASNVLLGVKRLMRFRRGYEDLVKD----AQLPWD------PTDVRAARPFNSNSSSPVRAEGTTAAARACPKFTVLVNHLVKTLFVNLTEKSSSYPTATLPGAALRDIFLVNNAEYVLTKAK 660
            LLE+ D +++G+  L  +L++G   G++ D                 N  T +L++V+ RL +  L +  ++  AV +DP  +R++P++ SVH L SN L  +KR+  FR GYE L +      +LPWD      P    + R    + + PV AE + A AR CP+F   VNHLV  L  NL EK+ +YPT     A  R +FL+NNA Y+LT A+
Sbjct:  305 LLEVGDTLNRGTALLLRVLRMG---GAEDD-----------------NLLTNSLSSVQARLCRTALQSCLDLVDAVQSDPCGKRNVPENASVHVLTSNTLRAIKRITPFREGYETLAQPRAAGVRLPWDSEGATPPPQTSSTRTLQRDGAPPVDAEHSEA-ARQCPRFAAFVNHLVARLLENLLEKAKAYPTGRADEAR-RQLFLLNNANYLLTNAR 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50242.12252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDX3_ECTSI7.820e-9064.78Exocyst subunit Exo70 family protein n=2 Tax=Ectoc... [more]
A0A835YN31_9STRA2.930e-2835.94Exocyst subunit Exo70 family protein n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50242contigH-elongata_contig50242:379..3856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionExocyst complex protein Exo70
Ec32 orthologEc-23_003470.1
Hectar predicted targeting categoryother localisation
Exons6
Model size669
Cds size669
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50242.12252.1prot_H-elongata_contig50242.12252.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50242 379..3856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.1723213-CDS-H-elongata_contig50242:378..4651622930826.1723213-CDS-H-elongata_contig50242:378..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 379..465 +
1691679587.0212152-CDS-H-elongata_contig50242:378..4651691679587.0212152-CDS-H-elongata_contig50242:378..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 379..465 +
1622930826.194791-CDS-H-elongata_contig50242:1170..12491622930826.194791-CDS-H-elongata_contig50242:1170..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 1171..1249 +
1691679587.0334313-CDS-H-elongata_contig50242:1170..12491691679587.0334313-CDS-H-elongata_contig50242:1170..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 1171..1249 +
1622930826.2181034-CDS-H-elongata_contig50242:2274..23361622930826.2181034-CDS-H-elongata_contig50242:2274..2336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 2275..2336 +
1691679587.0422587-CDS-H-elongata_contig50242:2274..23361691679587.0422587-CDS-H-elongata_contig50242:2274..2336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 2275..2336 +
1622930826.2367961-CDS-H-elongata_contig50242:2635..28501622930826.2367961-CDS-H-elongata_contig50242:2635..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 2636..2850 +
1691679587.0508378-CDS-H-elongata_contig50242:2635..28501691679587.0508378-CDS-H-elongata_contig50242:2635..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 2636..2850 +
1622930826.2577584-CDS-H-elongata_contig50242:2978..31201622930826.2577584-CDS-H-elongata_contig50242:2978..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 2979..3120 +
1691679587.0622075-CDS-H-elongata_contig50242:2978..31201691679587.0622075-CDS-H-elongata_contig50242:2978..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 2979..3120 +
1622930826.2775197-CDS-H-elongata_contig50242:3772..38561622930826.2775197-CDS-H-elongata_contig50242:3772..3856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 3773..3856 +
1691679587.0747085-CDS-H-elongata_contig50242:3772..38561691679587.0747085-CDS-H-elongata_contig50242:3772..3856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50242 3773..3856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50242.12252.1

>prot_H-elongata_contig50242.12252.1 ID=prot_H-elongata_contig50242.12252.1|Name=mRNA_H-elongata_contig50242.12252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
LKEGDVPSDVVGSLLEMSDAMHKGSYSLQDILKVGDVSGSKSDKSGHRKR
PSSSNGRGGGNKATEALAAVRRRLSQACLHTITNMAGAVSNDPKLRRHLP
DDGSVHPLASNVLLGVKRLMRFRRGYEDLVKDAQLPWDPTDVRAARPFNS
NSSSPVRAEGTTAAARACPKFTVLVNHLVKTLFVNLTEKSSSYPTATLPG
AALRDIFLVNNAEYVLTKAKVT*
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mRNA from alignment at H-elongata_contig50242:379..3856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50242.12252.1 ID=mRNA_H-elongata_contig50242.12252.1|Name=mRNA_H-elongata_contig50242.12252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3478bp|location=Sequence derived from alignment at H-elongata_contig50242:379..3856+ (Himanthalia elongata Himel1 dioecious)
CTGAAAGAAGGTGATGTTCCCTCTGACGTGGTGGGCAGCCTCCTCGAAAT
GTCGGACGCTATGCACAAGGGCTCCTACTCGCTGCAGGTAACATGTATGT
ATATAGTATAAAGTATATAAAGATGATGATTATGCGGCTTAAAAATAAAT
AAATAATGATAATAATAATGTTGCGTTTCATTCTAATATAATATTTGCTT
GAGATCTGTATGATCTATAGACTAGACGGCTCTATTTTGGCTTTTACACG
TTACATCTATTAATAAAAGGCATATGTCTCTCTTTATGTCTATTGGTAAA
CTCTCCCCCTCCCCCCCCCATCCCCTCTTTCAGATCGTTTAATACCACGC
TATGCTGCGGTCGTAATGTAACACTAATAATAATAGTAATAATAATAGTA
ATATATAAATATAATTATGCAATAGTATAGGAATATAATTATGCAAAAAT
ATATAGGAATATAGTGCTATATATTATAGCATTAATAAAAGCATTATATA
GTAATAGGAGTAATATAATCATAATATAATCATATGGCAGTATAGTAGCA
GGAGTAATATAGGACTCGTGTTACCCTAACGAAAAACACATGGACAGCGG
CTCGAGCGTCGTGAGCCCTTGCGTTTTTTAAGAAACATCACATCACTCGC
CATAAATATTCCCGATCGCCGTTTGTATTATTGCCTTTTTTTTTTAAGGC
GTGGCGTGGCTAGCGGGGGGGGGGGGGGGGGGTTTGGGGTTGTTTTTTTT
CCAATTTTGACGACGCTTGCTTCCGCACGTTTACGCTTGCAGGATATCCT
CAAAGTCGGCGACGTGTCCGGCTCGAAGAGCGATAAGTCGGGTCACCGGA
AGCGTCCCAGCTCTTCCAACGGTGAGCTTTTTTATTATTGTTATTATTAC
CCCCGTTAGTTTTTGTAGATTAAAAAAAAGACGCGCATGCGAGGATTTTC
GCCATTCATATTTGGAAAAGAGGTTTCTGATGATTACGTTTGATGTCAAA
AGCCTCAAAGGTTGCGTTGGCTGACGTTAGAGCTGAACAGGGTCGGCGTT
GGTTTCTTATCTTCATCGGGCGCGGGGGGGGGTAACCTGGACCTCACGTG
CTAACGTATTCCTTTTTCTTAAAAAATATAAAAATATAAGAACTCATTCA
AACCCTGCGAACATTTAAACTTTTATTCCACCACAAATGGTGAAGGCGAA
GGAAGCAACTATCGTCAGGTTCGAGTGTGTAGTCTTCTGGCGTGTATTGA
GTGTCTTCGGTTTACTAAGTTCAAGTAATTTTGACCCCTAATCGGGGTTT
CCACTTGAACGTCATGAGGCTGTGGGGGAAGAAGGGGGAGAGGGGTTACA
TAGTATATCATACATTTGGGAAAGTAAAAAAAGCGTGGCGTGGAGGAGCT
CAAGCCTACCCTAGCTTCTACCAAGGGAGTTAGTACCCTATGTGCGTTAA
GAGGCATATTTTGGTTTTATATCTTCTCTGCCACGCTCGATGATTTTTGT
TTTTCTTGTTGCCTTTTTATTTTCCACTTATTTTTTATTTTTTGGTTTTA
CTTGTTTTTATTTTTTTACGTTTCAACCGCCGCCTTGTTGTCTAAAAGCA
CGCGATGCGAAACCTCTTCCTTATCTCTAGTTCTCAGCTCTACTGTGTCT
CTCCCTCAGAGCAGTGACGGTTCAGCCGAGGCGGGCGGGGGGGCTCTTTT
TCGCAATGAGAGCTTCAGAGAACCTGTCCCCGTTCCCCTGTCCGTATTTC
TTCAGAGGCGTTTTTTATCCACCCTAGAGTGCTCTCTTCCGCCCACCGCA
CTGTTAAATCCTCTATATCTCTCAATTGTCACTCTCATTGTTGGATGGAG
GGGGGGGTCGCTCCGATGTTTGACGGGGATATTTTGTCACCTACAGGGCG
CGGGGGGGGTAACAAGGCCACGGAAGCCTTGGCAGCAGTCCGACGGAGGC
TTAGCCAGGTGCGTGGGTGGCGTGTCCGGTGCGTTTCCCCTCCCTGGGCT
AGTTTTGGTAGTTTCTATCTAGCCAGCTTGCTGTAGCCAATCGGCATAAA
TTAAATAACATCAGCCCAGCACGGACAAGTCACGGCTGGTGCTCTGCGCG
CTCAATGTGTGACACGCTGCGTCGGCCAGTCGAATGACACTCCAGAAGAC
CCTCTTCGGTCGATTTATTTTATCAAGCATTCCCCACAGCTGCGGCTTCT
TGTGTTCGCGTTTGTCTCCATCTCGCTTCCGCAAACTCCCCTATTACCCC
CCCCCAGGCATGCCTCCACACCATCACGAACATGGCGGGCGCTGTGAGCA
ATGACCCCAAGTTGCGACGGCATCTCCCAGACGACGGGTCGGTGCACCCG
CTGGCGTCGAACGTGCTCCTCGGTGTGAAGCGTCTGATGCGTTTCCGGAG
AGGATACGAGGACCTCGTCAAGGACGCACAGCTGCCGTGGGATCCCACCG
ACGTGAGAGCCGCTCGTCCCTTGTTCCTTGTCCCCTTATCCCTCTTCGAG
TGTGTTTTACAAAACTAACTGTCAGCAACTCAAAAGCTTCACATTATATT
ACTCGGGTGTTTTGACGTTTTTCCTTCGGTGGTGCGCAGGGCGGCAGCAG
CAACAGCAACAGCAGCAGCCCTGTTAGGGCGGAAGGCACGACCGCGGCGG
CTCGGGCCTGTCCAAAGTTCACCGTCCTGGTGAACCACCTCGTGAAGACT
CTGTTTGTCAACCTGACCGAGAAATCGTCTTCGTATCCTACGGTAAGGAA
TATAACAGAGGCATAAGCAGAAGGAAGATAACGCGTGTGGGTGCGCTGGA
AACGAGAACACGAGGGGAGGGGGGGGAGGGGGAGGGTGTTCGGCCACTCG
GCCGTGATGTTTTAGTTTGCGATGTTTGGTAAACCGTGTGATTTCGCCAG
CCCCCCATGGATTAGACTTCAACACACCCACACCCCTTTCCCAGTCCCCG
CGGGATAGCGCGGACTACCGTAGGTAATATGCCGGATTACAGGTTATAGT
CTATGCTACCAGGTAAATAATGTAAATTATTGGATATTTAGCGGTTAATG
CATCCCGGGAACGGACATTGCGCCCGATCCCCGTCCCTTAGACACACACG
CCTACCTTTCTTGATGCGAATAGTTTAACAAGAACACGGCGTTATTATTT
TAGCGTCTCATCGAAGATCTTCTCGTCGAAATATTTCGAAGAAAACGAGG
CCCTGAAATGCATGCACTAATAATATTGTACGGAAATAGAAGCCGTTCAA
AAACGAAAACGAACCGGTCGTTCCTATATTATGTACAATACAATATTGCA
GGGCCTTCCAGCCGCTCGTGCCAACAACCCCTGTTCCCCTGGCCCCGACT
CCCTTCCTGATTTGTGGAACGCCTCCCGGCTTTTGTCTTTATAGGCAACG
CTGCCGGGAGCTGCCCTGAGAGACATTTTCCTGGTGAACAACGCCGAGTA
CGTTTTGACCAAGGCTAAGGTGACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50242:379..3856+

>mRNA_H-elongata_contig50242.12252.1 ID=mRNA_H-elongata_contig50242.12252.1|Name=mRNA_H-elongata_contig50242.12252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig50242:379..3856+ (Himanthalia elongata Himel1 dioecious)
CTGAAAGAAGGTGATGTTCCCTCTGACGTGGTGGGCAGCCTCCTCGAAAT
GTCGGACGCTATGCACAAGGGCTCCTACTCGCTGCAGCTGAAAGAAGGTG
ATGTTCCCTCTGACGTGGTGGGCAGCCTCCTCGAAATGTCGGACGCTATG
CACAAGGGCTCCTACTCGCTGCAGGATATCCTCAAAGTCGGCGACGTGTC
CGGCTCGAAGAGCGATAAGTCGGGTCACCGGAAGCGTCCCAGCTCTTCCA
ACGGATATCCTCAAAGTCGGCGACGTGTCCGGCTCGAAGAGCGATAAGTC
GGGTCACCGGAAGCGTCCCAGCTCTTCCAACGGGCGCGGGGGGGGTAACA
AGGCCACGGAAGCCTTGGCAGCAGTCCGACGGAGGCTTAGCCAGGGCGCG
GGGGGGGTAACAAGGCCACGGAAGCCTTGGCAGCAGTCCGACGGAGGCTT
AGCCAGGCATGCCTCCACACCATCACGAACATGGCGGGCGCTGTGAGCAA
TGACCCCAAGTTGCGACGGCATCTCCCAGACGACGGGTCGGTGCACCCGC
TGGCGTCGAACGTGCTCCTCGGTGTGAAGCGTCTGATGCGTTTCCGGAGA
GGATACGAGGACCTCGTCAAGGACGCACAGCTGCCGTGGGATCCCACCGA
CGTGAGAGCCGCTCGTCCCTTGCATGCCTCCACACCATCACGAACATGGC
GGGCGCTGTGAGCAATGACCCCAAGTTGCGACGGCATCTCCCAGACGACG
GGTCGGTGCACCCGCTGGCGTCGAACGTGCTCCTCGGTGTGAAGCGTCTG
ATGCGTTTCCGGAGAGGATACGAGGACCTCGTCAAGGACGCACAGCTGCC
GTGGGATCCCACCGACGTGAGAGCCGCTCGTCCCTTCAACAGCAACAGCA
GCAGCCCTGTTAGGGCGGAAGGCACGACCGCGGCGGCTCGGGCCTGTCCA
AAGTTCACCGTCCTGGTGAACCACCTCGTGAAGACTCTGTTTGTCAACCT
GACCGAGAAATCGTCTTCGTATCCTACGCAACAGCAACAGCAGCAGCCCT
GTTAGGGCGGAAGGCACGACCGCGGCGGCTCGGGCCTGTCCAAAGTTCAC
CGTCCTGGTGAACCACCTCGTGAAGACTCTGTTTGTCAACCTGACCGAGA
AATCGTCTTCGTATCCTACGGCAACGCTGCCGGGAGCTGCCCTGAGAGAC
ATTTTCCTGGTGAACAACGCCGAGTACGTTTTGACCAAGGCTAAGGTGAC
GTGAGCAACGCTGCCGGGAGCTGCCCTGAGAGACATTTTCCTGGTGAACA
ACGCCGAGTACGTTTTGACCAAGGCTAAGGTGACGTGA
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