mRNA_H-elongata_contig5023.12251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5023.12251.1
Unique NamemRNA_H-elongata_contig5023.12251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5023.12251.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 9.310e-7
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 2 
Query:  539 EYLSQINLGEVHKRQMQLAGRGDDVGYPLARTIRSMVQFNASKYGLGCKGTGNQCERGACMKAAIGMFEGGGKERLPRAVT*ALLR 796
            E +  I +  V K   +   R  D GY LA+ +R  V + AS   L CKG GNQC  GACM+AA  ++ G G + +P     A+ +
Sbjct:   53 ELIESIGVHGVQKVLDREVSRDGDAGYCLAKRVRHQVYYGASA-DLLCKGMGNQCTAGACMRAAAQVYAGDGTDGVPAETVRAMCK 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5023.12251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5X1_ECTSI9.310e-737.21Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5023contigH-elongata_contig5023:9487..11621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1175
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5023.12251.1prot_H-elongata_contig5023.12251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5023 9878..11120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.0799813-UTR-H-elongata_contig5023:9486..98771622930826.0799813-UTR-H-elongata_contig5023:9486..9877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 9487..9877 -
1691679586.9719539-UTR-H-elongata_contig5023:9486..98771691679586.9719539-UTR-H-elongata_contig5023:9486..9877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 9487..9877 -
1622930826.1250308-UTR-H-elongata_contig5023:11120..113501622930826.1250308-UTR-H-elongata_contig5023:11120..11350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 11121..11350 -
1691679587.0010455-UTR-H-elongata_contig5023:11120..113501691679587.0010455-UTR-H-elongata_contig5023:11120..11350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 11121..11350 -
1622930826.1369944-UTR-H-elongata_contig5023:11367..116211622930826.1369944-UTR-H-elongata_contig5023:11367..11621Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 11368..11621 -
1691679587.0106554-UTR-H-elongata_contig5023:11367..116211691679587.0106554-UTR-H-elongata_contig5023:11367..11621Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5023 11368..11621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.0958266-CDS-H-elongata_contig5023:9877..100961622930826.0958266-CDS-H-elongata_contig5023:9877..10096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 9878..10096 -
1691679586.9819636-CDS-H-elongata_contig5023:9877..100961691679586.9819636-CDS-H-elongata_contig5023:9877..10096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 9878..10096 -
1622930826.1112998-CDS-H-elongata_contig5023:11039..111201622930826.1112998-CDS-H-elongata_contig5023:11039..11120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 11040..11120 -
1691679586.9918566-CDS-H-elongata_contig5023:11039..111201691679586.9918566-CDS-H-elongata_contig5023:11039..11120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5023 11040..11120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5023.12251.1

>prot_H-elongata_contig5023.12251.1 ID=prot_H-elongata_contig5023.12251.1|Name=mRNA_H-elongata_contig5023.12251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MWKKNRSERVSTCGKLQAEYLSQINLGEVHKRQMQLAGRGDDVGYPLART
IRSMVQFNASKYGLGCKGTGNQCERGACMKAAIGMFEGGGKERLPRAVT*
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mRNA from alignment at H-elongata_contig5023:9487..11621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5023.12251.1 ID=mRNA_H-elongata_contig5023.12251.1|Name=mRNA_H-elongata_contig5023.12251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2135bp|location=Sequence derived from alignment at H-elongata_contig5023:9487..11621- (Himanthalia elongata Himel1 dioecious)
ACCCCCTCTCAAGCTCTATAGCCACGCTCCAGCCATACCCGAGACGGCCA
TCCCCACACCCAAGCCACAGTCTCTGTATCTATGTCAGAAGAGATAGAAT
CTGAGACTTAACGCCCGCGTTTGTCCGAACCGCACTCGGAGGAAGAGCAC
ACGACTAGGAGCTCCAAGACAAGAAACGCGTGGCAGCTGGTGCCCAAGAC
ACTGCTTCAGCAACGCAGGCGGCTGAGGAGGCTACGGAGTCGAAGGAGGA
GAAGGCGGATCAAGAGGAGAGGATCGGGAAGGGGGAAGGGGCTGTAGACT
CCAATGATTCCAGTGTTTCGGTGGATGAAGACACGATGCAAGCTCGCGAG
TCGTTGATGGTTGACAAGTACCCCATGCAGCCGCAGCACCCTACTTCTGC
ATTTCCCGAGATGGTCGCGATGGCAGAGACGGCGAGCGTGGATACACACG
CGCGCCTTAACCGACGCTACCGGTCTTTGTGATCACGGTGAGGAGTTGGT
CATGTGGAAGAAGAACCGGAGCGAGAGAGTCTCCACCTGCGGCAAGCTGC
AAGCCGAATACCTCTCTCAGATCAACCTTGGGGTAAGAAGAGGTGTTCGT
TGGTCGAGCACCAAAGGCCATTTGTGTAGGATTGAATTTTATGAATATAA
ATATAGGGTTTCCACTTGTCTTAAAAAGTGTATGAAAATAATGCACTAAA
GTAAAAAGGAACCTAAACTAGTCCGCCACTGGGAGACTACTTTAGGTTCC
TCTTCACTTTAGTGCATGTTTTTCGTGCATTGTTTGTAACACGTTGAAAC
CCTATAATATGATATCATACTACAAACAGACTAGACAAGTTACCTTCCTT
TTTTTTTGCCATATTTGCCTGCACTCTCACCATGAGTATGATTCCATCGT
AACCAACCTCTGTATTATATATAGTACAGTTATACCAGATATCATGCCAT
TTCATATGTACGCATACTTGTACATACCATAGAGTTTCCACGTGTTACAA
ACAATGCACGAAAAACATGCACTAAAGTAAAGAGAAACCTAAAGTAGTCT
CCCAGTGGCGGACTAGTTTAGGTTCCCGTTCACTTTAGTGCATGTTTTTC
GTGCATTGTTCTTGACACGTGGAAACCCTATACTAAACACACTGATTGAC
ACATATACGTATCATACAGTAGCACCAGCAGTATAGAGTTGTACTATAAT
ATAGTATAGTTAGACCATATATAGTGTCATTTCATTTGTACGCATACTTG
TACCATACATATCATACAGAAGCACCAGTGCAGAGCTCATAATCGTCCGT
TGTTAGGTCAGTAGTAAATCGGCCAAGCGGTCCAGCAGCTCTATGTTGAA
CTTTTGCGGCGTCCACTAACAGCTTGCGAGATGCGTACATGATAGCCCAT
GCGCACCAAGCTTCTGACTCCTAATAATATCAACTGAATAAATAGAGCCA
GTGCAGTATATGGGGTTGTTGTATCCTTATTTTGTACATTACCCCTCTCC
CGTGCAACTTGCATGCTACGTGCAGGAAGTCCACAAACGCCAGATGCAGC
TGGCGGGCAGGGGGGACGACGTGGGCTACCCCCTCGCACGCACTATCCGG
TCTATGGTGCAGTTCAACGCTTCCAAGTACGGACTCGGATGCAAGGGAAC
AGGCAACCAATGCGAACGCGGCGCGTGCATGAAAGCAGCTATAGGGATGT
TCGAGGGGGGTGGGAAAGAGAGGTTGCCGCGGGCTGTCACTTGAGCTCTC
CTCCGGTACTAAGTGATATCGTTTTTGTCTGACGCGAAGCGTTGCTGTGT
ACTTTTCTGTTGCGCACGCTGCAGTTGACGTGGCACTCCTTATTTTTTTT
CTTTCCGTCGGTACATTGTAGCAAGGGTACTCAAAGACCAAGTATAAGTA
GGCGTTTTTCGTTGTTGAATGGGGCCCTCGGGCATGTTATTTTTATTTAA
AGACTTTAAGCTCATTCTAACTCTCCGAACATCCACACCTTCTTTCACCA
TAGGTGCAATCCAGGGAACCAACTATCAGAAAGCAGGAATGAGCAGGGAC
AATAGGAATAAGCAGGGGTAAGCATGTTATGTTGTTGCGTACGTGTTCTT
CTGTTTTCGCCATAATGCGATTATTGGGATATACA
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Coding sequence (CDS) from alignment at H-elongata_contig5023:9487..11621-

>mRNA_H-elongata_contig5023.12251.1 ID=mRNA_H-elongata_contig5023.12251.1|Name=mRNA_H-elongata_contig5023.12251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig5023:9487..11621- (Himanthalia elongata Himel1 dioecious)
ATGTGGAAGAAGAACCGGAGCGAGAGAGTCTCCACCTGCGGCAAGCTGCA
AGCCGAATACCTCTCTCAGATCAACCTTGGGATGTGGAAGAAGAACCGGA
GCGAGAGAGTCTCCACCTGCGGCAAGCTGCAAGCCGAATACCTCTCTCAG
ATCAACCTTGGGGAAGTCCACAAACGCCAGATGCAGCTGGCGGGCAGGGG
GGACGACGTGGGCTACCCCCTCGCACGCACTATCCGGTCTATGGTGCAGT
TCAACGCTTCCAAGTACGGACTCGGATGCAAGGGAACAGGCAACCAATGC
GAACGCGGCGCGTGCATGAAAGCAGCTATAGGGATGTTCGAGGGGGGTGG
GAAAGAGAGGTTGCCGCGGGCTGTCACTTGAGAAGTCCACAAACGCCAGA
TGCAGCTGGCGGGCAGGGGGGACGACGTGGGCTACCCCCTCGCACGCACT
ATCCGGTCTATGGTGCAGTTCAACGCTTCCAAGTACGGACTCGGATGCAA
GGGAACAGGCAACCAATGCGAACGCGGCGCGTGCATGAAAGCAGCTATAG
GGATGTTCGAGGGGGGTGGGAAAGAGAGGTTGCCGCGGGCTGTCACTTGA
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