mRNA_H-elongata_contig5021.12248.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5021.12248.1
Unique NamemRNA_H-elongata_contig5021.12248.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5021.12248.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.960e-45
Identity = 90/147 (61.22%), Postives = 107/147 (72.79%), Query Frame = 1 
Query:  325 DDTLPFVRSVDELRRFVRLEGSVVGHGRCMWADTFAHHVVSRRLGLTILFVDMERAKTAWPYRVLARAVKEGGGEVEERFVVLKREPNHFVLIKTLPVVVPDEAIDAQASPK--------------KGQACFRRSELPDVMRRLWQI 723
            ++ LP V +V+ELRRFVRLEGS VGHG CMWADT AHHVVSRRL +TILFVDMER K AWPYRVLAR V +     +ERFVVLKREP+HFVL++T+P   P+++  A  S                +GQACF RSELPDV+RRLWQ+
Sbjct:  342 NEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDGEDERFVVLKREPSHFVLLETVPS--PEDSDGAVGSDSGXXXXXXXXXXKGGRGQACFSRSELPDVVRRLWQL 486
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BLAST of mRNA_H-elongata_contig5021.12248.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.740e-44
Identity = 91/147 (61.90%), Postives = 109/147 (74.15%), Query Frame = 1 
Query:  325 DDTLPFVRSVDELRRFVRLEGSVVGHGRCMWADTFAHHVVSRRLGLTILFVDMERAKTAWPYRVLARAVKEGGGEVEERFVVLKREPNHFVLIKTLPVVVPDEAIDAQASPK--------------KGQACFRRSELPDVMRRLWQI 723
            ++ LP V +V+ELRRFVRLEGS VGHG CMWADT AHHVVSRRL +TILFVDMER K AWPYRVLAR V +   E +ERFVVLKREP+HFVL++T+P   P+++  A +S                +GQACF RSELPDV+RRLWQ+
Sbjct:  662 NEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKREPSHFVLLETVPS--PEDSDGAVSSXXXXXXXXXXXXXKGGRGQACFSRSELPDVVRRLWQL 806
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BLAST of mRNA_H-elongata_contig5021.12248.1 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.050e-17
Identity = 57/134 (42.54%), Postives = 72/134 (53.73%), Query Frame = 1 
Query:  322 GDDTLPFVRSVDELRRFVRLEGSVVGHGRCMWADTFAHHVVSRRLGLTILFVDMERAKTAWPYRVLARAVKEGGGEVEERFVVLKRE--PNHFVLIKTLPVVVPDEAIDAQASPKKGQACFRRSELPDVMRRLW 717
            G+   P V++V++L+ ++R EGS  G G CMWAD  A  VV++RL L ILFVDMERA+ AWPYR LA    E        +VVLKRE    HFV I                    G A F   +LP+ +R LW
Sbjct:  202 GEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEGEPA-----HYVVLKREGPAGHFVYI----------------GAASGAAAFALRDLPNAVRALW 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5021.12248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS81_ECTSI2.960e-4561.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3H2_9PHAE1.740e-4461.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA53_9STRA2.050e-1742.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5021contigH-elongata_contig5021:5142..7191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004490.1
Hectar predicted targeting categoryother localisation
Exons2
Model size1741
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5021.12248.1prot_H-elongata_contig5021.12248.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5021 5226..6191 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.8554041-UTR-H-elongata_contig5021:5141..52251622930825.8554041-UTR-H-elongata_contig5021:5141..5225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5021 5142..5225 +
1691679586.88165-UTR-H-elongata_contig5021:5141..52251691679586.88165-UTR-H-elongata_contig5021:5141..5225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5021 5142..5225 +
1622930825.9056807-UTR-H-elongata_contig5021:6191..71911622930825.9056807-UTR-H-elongata_contig5021:6191..7191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5021 6192..7191 +
1691679586.9074924-UTR-H-elongata_contig5021:6191..71911691679586.9074924-UTR-H-elongata_contig5021:6191..7191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5021 6192..7191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.870569-CDS-H-elongata_contig5021:5225..56241622930825.870569-CDS-H-elongata_contig5021:5225..5624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 5226..5624 +
1691679586.8908572-CDS-H-elongata_contig5021:5225..56241691679586.8908572-CDS-H-elongata_contig5021:5225..5624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 5226..5624 +
1622930825.888903-CDS-H-elongata_contig5021:5933..61911622930825.888903-CDS-H-elongata_contig5021:5933..6191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 5934..6191 +
1691679586.899211-CDS-H-elongata_contig5021:5933..61911691679586.899211-CDS-H-elongata_contig5021:5933..6191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5021 5934..6191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5021.12248.1

>prot_H-elongata_contig5021.12248.1 ID=prot_H-elongata_contig5021.12248.1|Name=mRNA_H-elongata_contig5021.12248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
MVTSVREAGRLGRRKRGGRGPAAIETTTNAANVAKLPTRKSSRVGTHAQV
SSRIEEGVKEGGLEEEEDQDEKDDNDEDSGDDTLPFVRSVDELRRFVRLE
GSVVGHGRCMWADTFAHHVVSRRLGLTILFVDMERAKTAWPYRVLARAVK
EGGGEVEERFVVLKREPNHFVLIKTLPVVVPDEAIDAQASPKKGQACFRR
SELPDVMRRLWQIEPISR*
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mRNA from alignment at H-elongata_contig5021:5142..7191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5021.12248.1 ID=mRNA_H-elongata_contig5021.12248.1|Name=mRNA_H-elongata_contig5021.12248.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2050bp|location=Sequence derived from alignment at H-elongata_contig5021:5142..7191+ (Himanthalia elongata Himel1 dioecious)
AGGCTGACCACCGTGAAGGATGGGACGTCACCCACCGACGAAAGATTGTC
GAAGGGGGTACCATCAACCGACTCCAAAGGAGCGATGGTGACAAGCGTAC
GCGAGGCCGGCCGCCTTGGACGACGCAAAAGAGGGGGGCGGGGGCCGGCG
GCGATAGAGACAACGACCAACGCTGCAAATGTCGCGAAACTTCCCACTCG
CAAAAGTTCAAGAGTAGGAACTCACGCCCAGGTGTCTTCTAGAATAGAGG
AAGGCGTGAAAGAGGGGGGATTAGAGGAGGAAGAGGATCAGGACGAAAAA
GACGACAATGATGAGGATAGTGGCGATGATACCCTCCCGTTCGTGCGGTC
GGTAGACGAGCTTCGTCGGTTCGTTCGCCTGGAAGGGTCGGTCGTGGGCC
ACGGGAGGTGCATGTGGGCAGACACGTTCGCTCACCATGTGGTATCGCGG
CGGTTGGGCCTCACCATTCTCTTTGTCGATATGGTGGGTGATGCTCTGAG
CCAAAGAAATCGTAGTTAGTTTCTTATTTAAAATATACACAATTTTCTGG
CATACGGATTGGTGTGACCGGCGTATGGTTTTAGAGGTTCTGCAGCCAGG
TGTCTATCTGAACCGTAGGTCGTGTTGTACACGCGCTGTTCGTGTCGGCT
TTCGTGCAAATATCACTTTGCGCTCCATTTTTTCCCTCCATGAGACGATG
GAATTCAGCGCTCGAAATCACCACGGCGTTCGCAGCTACCCTTCGTTGAT
TGTCGCGACCGCCGCCCGCATCCTCCGTTTTATCTTCTGCAGGAACGAGC
GAAAACCGCGTGGCCGTATCGTGTGCTGGCGCGAGCCGTCAAGGAGGGCG
GCGGTGAAGTGGAGGAGAGATTTGTCGTCCTCAAGAGAGAACCCAACCAC
TTCGTCCTCATCAAAACATTGCCCGTCGTTGTCCCTGATGAAGCTATTGA
CGCGCAAGCATCGCCGAAGAAAGGACAGGCATGCTTCCGCCGTTCCGAGC
TGCCGGACGTCATGAGGAGACTCTGGCAGATCGAACCGATATCGCGGTGA
ACCGCCAAAGTGGGTGGTGCCATAATAATCCTGTCGAGTGAGAAGGCTCT
AAAAGTTGCCTCCTTTTTGGACTTCGCGTGTGTGTCGCTAAAAATTGGTC
ATTCGTCGCTAGATGTATTAATAGCGGATGTGTGAAGCAAGCGTTGTAGT
GTGTCGTATGCCGAAAAAGATATTAAGTATCACGAGATAGATTCCGCTTA
CCTTCATCAATAGCCTTCAGAGCGTTGCCTCCTCTTCAATTATCAGAAGA
CTACCGAACTAGACTCGTCTTCGGTGGTCATATCTGACATGTAGTTCCAT
TTCTCGATACGGCCCTGTACGCTGTGTTCTAGCCATACCGTACGCATGGA
GTTTGTAACGGAGACGTCGCTCACATCCCAGACCGTTTCAGCCGTGGGAC
TTAGGTGTCCCCTGGCGCGCGAAGCGTGTCTTGTCACCGTGTCAGTATCG
TTGTTGTTAATGTAATAAATAGTGCCTTCGGCCCTTTAGCTTTTCAGCTG
CCTTTGCAGACAAAAAAAAAGCCACTAATGATAGTTGAGCTTGATCGTTA
ACGCAACCAAGGTCAGACTGGGTGGGAAAATATGATTATGGTGCGGTTGC
CATCCGTCCGACCAAAGCACAACTATATGTCCAGAGTGACTTCTGTGTGC
TATAGGGTTTTCACCTTACCATTACGGTACTTGTTTAGCCTATTATGGCG
CTGTCGTGTGCAGCTCGTCGTTGGACGGGTGCAACACGATTCAAAGGAAG
AACGATCGCCGGGATTGGGTGAGGACCCAAAACCTAATTGATTTGCGTTT
TGCGAGCTTGGCTGCCGGTGTATGATCTCGGAATGTTATGTGACGATTTG
ATTTCGTTCATTTCGGGAGCTTTGTTACGACTCTCGAGTGCGCGAAGAAA
CGGATTCTTGATCGTTTTAGCTTGGTTTATCGTGGCGCTTTAGAAATGTC
ATCTCCCGTGACTATTTTTTTATTGGGGAAAAATACAAATAAAAGAGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig5021:5142..7191+

>mRNA_H-elongata_contig5021.12248.1 ID=mRNA_H-elongata_contig5021.12248.1|Name=mRNA_H-elongata_contig5021.12248.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig5021:5142..7191+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACAAGCGTACGCGAGGCCGGCCGCCTTGGACGACGCAAAAGAGG
GGGGCGGGGGCCGGCGGCGATAGAGACAACGACCAACGCTGCAAATGTCG
CGAAACTTCCCACTCGCAAAAGTTCAAGAGTAGGAACTCACGCCCAGGTG
TCTTCTAGAATAGAGGAAGGCGTGAAAGAGGGGGGATTAGAGGAGGAAGA
GGATCAGGACGAAAAAGACGACAATGATGAGGATAGTGGCGATGATACCC
TCCCGTTCGTGCGGTCGGTAGACGAGCTTCGTCGGTTCGTTCGCCTGGAA
GGGTCGGTCGTGGGCCACGGGAGGTGCATGTGGGCAGACACGTTCGCTCA
CCATGTGGTATCGCGGCGGTTGGGCCTCACCATTCTCTTTGTCGATATGA
TGGTGACAAGCGTACGCGAGGCCGGCCGCCTTGGACGACGCAAAAGAGGG
GGGCGGGGGCCGGCGGCGATAGAGACAACGACCAACGCTGCAAATGTCGC
GAAACTTCCCACTCGCAAAAGTTCAAGAGTAGGAACTCACGCCCAGGTGT
CTTCTAGAATAGAGGAAGGCGTGAAAGAGGGGGGATTAGAGGAGGAAGAG
GATCAGGACGAAAAAGACGACAATGATGAGGATAGTGGCGATGATACCCT
CCCGTTCGTGCGGTCGGTAGACGAGCTTCGTCGGTTCGTTCGCCTGGAAG
GGTCGGTCGTGGGCCACGGGAGGTGCATGTGGGCAGACACGTTCGCTCAC
CATGTGGTATCGCGGCGGTTGGGCCTCACCATTCTCTTTGTCGATATGGA
ACGAGCGAAAACCGCGTGGCCGTATCGTGTGCTGGCGCGAGCCGTCAAGG
AGGGCGGCGGTGAAGTGGAGGAGAGATTTGTCGTCCTCAAGAGAGAACCC
AACCACTTCGTCCTCATCAAAACATTGCCCGTCGTTGTCCCTGATGAAGC
TATTGACGCGCAAGCATCGCCGAAGAAAGGACAGGCATGCTTCCGCCGTT
CCGAGCTGCCGGACGTCATGAGGAGACTCTGGCAGATCGAACCGATATCG
CGGTGAGAACGAGCGAAAACCGCGTGGCCGTATCGTGTGCTGGCGCGAGC
CGTCAAGGAGGGCGGCGGTGAAGTGGAGGAGAGATTTGTCGTCCTCAAGA
GAGAACCCAACCACTTCGTCCTCATCAAAACATTGCCCGTCGTTGTCCCT
GATGAAGCTATTGACGCGCAAGCATCGCCGAAGAAAGGACAGGCATGCTT
CCGCCGTTCCGAGCTGCCGGACGTCATGAGGAGACTCTGGCAGATCGAAC
CGATATCGCGGTGA
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