mRNA_H-elongata_contig50148.12242.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50148.12242.1
Unique NamemRNA_H-elongata_contig50148.12242.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50148.12242.1 vs. uniprot
Match: D8LFW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.080e-10
Identity = 35/60 (58.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 FRAPFCFPAHPGELRLLLRGRLPEYLRRVEEGSGGAEFGGSWLDNAGVLPPMLEGIADEV 180
            F  PF  P H  ELRLLLRGRLPEYL  VE   GG    G WL NA VLP  LE +A+E+
Sbjct:  496 FGPPFV-PTHREELRLLLRGRLPEYLGHVERWLGGEGKFGDWLGNAHVLPVALESLAEEI 554
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50148.12242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFW8_ECTSI1.080e-1058.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50148contigH-elongata_contig50148:279..458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.2430816-CDS-H-elongata_contig50148:278..4581622930825.2430816-CDS-H-elongata_contig50148:278..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50148 279..458 -
1691679586.5878644-CDS-H-elongata_contig50148:278..4581691679586.5878644-CDS-H-elongata_contig50148:278..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50148 279..458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50148.12242.1prot_H-elongata_contig50148.12242.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50148 279..458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50148.12242.1

>prot_H-elongata_contig50148.12242.1 ID=prot_H-elongata_contig50148.12242.1|Name=mRNA_H-elongata_contig50148.12242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
FRAPFCFPAHPGELRLLLRGRLPEYLRRVEEGSGGAEFGGSWLDNAGVLP
PMLEGIADEV
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mRNA from alignment at H-elongata_contig50148:279..458-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50148.12242.1 ID=mRNA_H-elongata_contig50148.12242.1|Name=mRNA_H-elongata_contig50148.12242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig50148:279..458- (Himanthalia elongata Himel1 dioecious)
TTCCGCGCGCCGTTTTGTTTCCCGGCGCACCCGGGCGAGCTTCGCCTGCT
CCTAAGGGGAAGACTGCCGGAGTACCTGCGGCGCGTGGAAGAGGGTTCGG
GCGGCGCGGAGTTCGGCGGGAGCTGGCTCGACAACGCGGGCGTGTTGCCT
CCTATGCTCGAGGGCATCGCAGATGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig50148:279..458-

>mRNA_H-elongata_contig50148.12242.1 ID=mRNA_H-elongata_contig50148.12242.1|Name=mRNA_H-elongata_contig50148.12242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig50148:279..458- (Himanthalia elongata Himel1 dioecious)
TTCCGCGCGCCGTTTTGTTTCCCGGCGCACCCGGGCGAGCTTCGCCTGCT
CCTAAGGGGAAGACTGCCGGAGTACCTGCGGCGCGTGGAAGAGGGTTCGG
GCGGCGCGGAGTTCGGCGGGAGCTGGCTCGACAACGCGGGCGTGTTGCCT
CCTATGCTCGAGGGCATCGCAGATGAGGTATTCCGCGCGCCGTTTTGTTT
CCCGGCGCACCCGGGCGAGCTTCGCCTGCTCCTAAGGGGAAGACTGCCGG
AGTACCTGCGGCGCGTGGAAGAGGGTTCGGGCGGCGCGGAGTTCGGCGGG
AGCTGGCTCGACAACGCGGGCGTGTTGCCTCCTATGCTCGAGGGCATCGC
AGATGAGGTA
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