mRNA_H-elongata_contig50083.12232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50083.12232.1
Unique NamemRNA_H-elongata_contig50083.12232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: D7G7C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C1_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.100e-41
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 1
Query:   22 QIPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPKWSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
            +IPPKTDLQCMLHWNHVINPELTKGKGSW+ EED+RI+   QLV+ +G KWSVIAS+LKAE GK +RVGKQIRERYLHHLDP LKKG W+  E  +
Sbjct:  398 KIPPKTDLQCMLHWNHVINPELTKGKGSWKQEEDERII---QLVEHHGKKWSVIASQLKAENGKMTRVGKQIRERYLHHLDPNLKKGDWSVEEEEI 490          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: K3W5C7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5C7_GLOUD)

HSP 1 Score: 92.8 bits (229), Expect = 2.840e-20
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   22 QIPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPKWSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
            Q+P +TDLQCM HW  V++P + KGKG+W  +ED  IL+    V + GP+W+ IA  L        RVGKQ RERYL+HLDPAL K  WT  E
Sbjct:  261 QLPGRTDLQCMQHWYQVLDPSIVKGKGTWTSQEDT-ILQTK--VSELGPRWTEIAQFLPG------RVGKQCRERYLNHLDPALGKDPWTPEE 344          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A5B7BD63_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BD63_DAVIN)

HSP 1 Score: 92.0 bits (227), Expect = 3.100e-20
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   25 IPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYG-PKWSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
            IP +TD+QC+  W  V+NPEL KG   W  EED RI+E   LV++YG  KWSVIA  L        R+GKQ RER+ +HLDPA+KK  WT  E S+
Sbjct:   85 IPGRTDVQCLHRWQKVLNPELVKGP--WTKEEDDRIIE---LVEKYGCKKWSVIAKSLPG------RIGKQCRERWHNHLDPAIKKDAWTKEEESI 169          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A2R5L6N8_9ACAR (Putative transcription factor myb (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L6N8_9ACAR)

HSP 1 Score: 92.4 bits (228), Expect = 1.100e-19
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
            P +TD+QC   W  V+NP+L KG  SW  EED++++E   LVQ+YGPK W++IA  LK       R+GKQ RER+ +HL+PA+KK  WT  E ++
Sbjct:   79 PDRTDVQCQQRWQKVVNPDLVKG--SWSKEEDEKVVE---LVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEEETI 162          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A293MX46_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MX46_ORNER)

HSP 1 Score: 92.4 bits (228), Expect = 1.110e-19
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
            P +TD+QC   W  V+NP+L KG  SW  EED++++E   LVQ+YGPK W++IA  LK       R+GKQ RER+ +HL+PA+KK  WT  E ++
Sbjct:   86 PDRTDVQCQQRWQKVVNPDLVKG--SWSKEEDEKVVE---LVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEEETI 169          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: UPI0018950A0B (myb-related protein B-like isoform X1 n=4 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018950A0B)

HSP 1 Score: 90.5 bits (223), Expect = 5.220e-19
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
            P ++D+QC   W+ V+NPEL KG  SW  EED +++   QLVQ+YGPK W++IA  LK       R+GKQ RER+ +HL+PA+KK  WT  E
Sbjct:   97 PDRSDVQCQQRWHKVVNPELVKG--SWSKEEDDKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEE 177          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: UPI00189A85C0 (myb-related protein B-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189A85C0)

HSP 1 Score: 90.5 bits (223), Expect = 5.230e-19
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
            P ++D+QC   W+ V+NPEL KG  SW  EED +++   QLVQ+YGPK W++IA  LK       R+GKQ RER+ +HL+PA+KK  WT  E
Sbjct:   91 PDRSDVQCQQRWHKVVNPELVKG--SWSKEEDDKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEE 171          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A8C4ZF19_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZF19_GADMO)

HSP 1 Score: 85.9 bits (211), Expect = 6.950e-19
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   34 KTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
            ++DLQC   W +V++PEL KG   W  EED+R++   QLV +YGPK WSVIA  L       SR+GKQ RER+ +HL+PA+KK  WT  E
Sbjct:   23 RSDLQCQRRWQNVLSPELVKGP--WTKEEDERVI---QLVHKYGPKRWSVIAKHL------HSRIGKQCRERWHNHLNPAVKKSLWTLEE 101          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: UPI0018879D79 (myb-related protein B-like isoform X1 n=3 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI0018879D79)

HSP 1 Score: 90.1 bits (222), Expect = 7.130e-19
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
            P ++D+QC   W+ V+NPEL KG  SW  EED +++   QLVQ+YGPK W++IA  LK       R+GKQ RER+ +HL+PA+KK  WT  E
Sbjct:   95 PDRSDVQCQQRWHKVVNPELVKG--SWSKEEDDKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEDE 175          
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A6P7W1S6_IXOSC (myb-related protein A isoform X1 n=8 Tax=Ixodes TaxID=6944 RepID=A0A6P7W1S6_IXOSC)

HSP 1 Score: 89.7 bits (221), Expect = 9.780e-19
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
            P ++D+QC   W+ V+NP+L KG  SW  EED++++   QLVQ+YGPK W++IA  LK       R+GKQ RER+ +HL+PA+KK  WT  E
Sbjct:  114 PDRSDVQCQQRWHKVVNPDLVKG--SWSKEEDEKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEHE 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C1_ECTSI1.100e-4175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3W5C7_GLOUD2.840e-2051.61Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5B7BD63_DAVIN3.100e-2052.08Uncharacterized protein (Fragment) n=1 Tax=Davidia... [more]
A0A2R5L6N8_9ACAR1.100e-1948.42Putative transcription factor myb (Fragment) n=1 T... [more]
A0A293MX46_ORNER1.110e-1948.42Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
UPI0018950A0B5.220e-1950.00myb-related protein B-like isoform X1 n=4 Tax=Rhip... [more]
UPI00189A85C05.230e-1950.00myb-related protein B-like n=1 Tax=Dermacentor sil... [more]
A0A8C4ZF19_GADMO6.950e-1951.11Uncharacterized protein n=1 Tax=Gadus morhua TaxID... [more]
UPI0018879D797.130e-1950.00myb-related protein B-like isoform X1 n=3 Tax=Rhip... [more]
A0A6P7W1S6_IXOSC9.780e-1948.91myb-related protein A isoform X1 n=8 Tax=Ixodes Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50083contigH-elongata_contig50083:295..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue9.5e-36
Seed eggNOG ortholog2880.D7G7C1
KEGG koko:K09422
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.3952115-CDS-H-elongata_contig50083:294..4611622930824.3952115-CDS-H-elongata_contig50083:294..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50083 295..461 -
1691679586.265529-CDS-H-elongata_contig50083:294..4611691679586.265529-CDS-H-elongata_contig50083:294..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50083 295..461 -
1622930824.4071665-CDS-H-elongata_contig50083:1053..11951622930824.4071665-CDS-H-elongata_contig50083:1053..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50083 1054..1195 -
1691679586.276201-CDS-H-elongata_contig50083:1053..11951691679586.276201-CDS-H-elongata_contig50083:1053..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50083 1054..1195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50083.12232.1prot_H-elongata_contig50083.12232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50083 295..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50083.12232.1

>prot_H-elongata_contig50083.12232.1 ID=prot_H-elongata_contig50083.12232.1|Name=mRNA_H-elongata_contig50083.12232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MISLLLFQIPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQL
VQQYGPKWSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE
ASL
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mRNA from alignment at H-elongata_contig50083:295..1195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50083.12232.1 ID=mRNA_H-elongata_contig50083.12232.1|Name=mRNA_H-elongata_contig50083.12232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at H-elongata_contig50083:295..1195- (Himanthalia elongata Himel1 dioecious)
ATGATTTCTTTGTTGTTATTTCAGATACCCCCGAAGACCGACCTACAGTG CATGCTACACTGGAATCACGTTATCAACCCGGAGCTGACCAAGGGCAAAG GCTCTTGGAGACCGGAAGAAGATCAGCGGATTCTCGAGGCGAGTAGTCGA ATACGGACGGTACGGTGCTTGTAATACGTGATACTGGCGAGTTGATAGCA AGGCGAAACAAATACGTAAGGCACGCGTATTGTTTGCCTCGGCGGATCGG TCAATACGGCTCCCGATCCCTCTCCAACATGATGAAGTGTTGATGGCAAG GCTAAACGAATACGTACGGCACGCGTATTTTTTCCCTCGGTGGGTTGGTC GATACGGCTCCCGATCCCTCTCCAACGTGTTGTTTTTCACAAGCAGTATT TACTTTATCTTCTCATTCTTAATTTCAAGCGACAAACAGCGCTATGGTGG TTGATAGTTGATAGGTAAGTTAGTTGATGGATTTGTCGATCGATTGATTG ATAGGTTGATCTATTGATATGTTGTTTATCGATTATTTGATTGGTTGACT TGATTAATGCACGCCAGCGACTGAAGCAGCTGAACGCATACGGGCACAAT AACAATACTATCAATAGCAAAATAACAGTATACCGTATAACAGTACCGCG TATATCTTTTATATCTCTCGATTTGTCTGTCTGTCTGTATATGTATGTAC GGTATACGGTATTGCATGTTGGGTACCGGTACAGCACAGCTGGTGCAGCA GTACGGGCCCAAGTGGAGCGTGATCGCGTCGAGGTTGAAGGCCGAGACCG GGAAGCAGTCGCGCGTAGGTAAACAGATCCGAGAACGATATCTACACCAC CTCGACCCAGCCCTCAAAAAGGGAGGATGGACCGCAGCGGAGGCGAGTTT G
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Coding sequence (CDS) from alignment at H-elongata_contig50083:295..1195-

>mRNA_H-elongata_contig50083.12232.1 ID=mRNA_H-elongata_contig50083.12232.1|Name=mRNA_H-elongata_contig50083.12232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig50083:295..1195- (Himanthalia elongata Himel1 dioecious)
ATGATTTCTTTGTTGTTATTTCAGATACCCCCGAAGACCGACCTACAGTG
CATGCTACACTGGAATCACGTTATCAACCCGGAGCTGACCAAGGGCAAAG
GCTCTTGGAGACCGGAAGAAGATCAGCGGATTCTCGAGGCGAATGATTTC
TTTGTTGTTATTTCAGATACCCCCGAAGACCGACCTACAGTGCATGCTAC
ACTGGAATCACGTTATCAACCCGGAGCTGACCAAGGGCAAAGGCTCTTGG
AGACCGGAAGAAGATCAGCGGATTCTCGAGGCGACACAGCTGGTGCAGCA
GTACGGGCCCAAGTGGAGCGTGATCGCGTCGAGGTTGAAGGCCGAGACCG
GGAAGCAGTCGCGCGTAGGTAAACAGATCCGAGAACGATATCTACACCAC
CTCGACCCAGCCCTCAAAAAGGGAGGATGGACCGCAGCGGAGGCGAGTTT
GCACAGCTGGTGCAGCAGTACGGGCCCAAGTGGAGCGTGATCGCGTCGAG
GTTGAAGGCCGAGACCGGGAAGCAGTCGCGCGTAGGTAAACAGATCCGAG
AACGATATCTACACCACCTCGACCCAGCCCTCAAAAAGGGAGGATGGACC
GCAGCGGAGGCGAGTTTG
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