mRNA_H-elongata_contig50083.12232.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: D7G7C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C1_ECTSI) HSP 1 Score: 155 bits (391), Expect = 1.100e-41 Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 1
Query: 22 QIPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPKWSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
+IPPKTDLQCMLHWNHVINPELTKGKGSW+ EED+RI+ QLV+ +G KWSVIAS+LKAE GK +RVGKQIRERYLHHLDP LKKG W+ E +
Sbjct: 398 KIPPKTDLQCMLHWNHVINPELTKGKGSWKQEEDERII---QLVEHHGKKWSVIASQLKAENGKMTRVGKQIRERYLHHLDPNLKKGDWSVEEEEI 490
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: K3W5C7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5C7_GLOUD) HSP 1 Score: 92.8 bits (229), Expect = 2.840e-20 Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 1
Query: 22 QIPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPKWSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
Q+P +TDLQCM HW V++P + KGKG+W +ED IL+ V + GP+W+ IA L RVGKQ RERYL+HLDPAL K WT E
Sbjct: 261 QLPGRTDLQCMQHWYQVLDPSIVKGKGTWTSQEDT-ILQTK--VSELGPRWTEIAQFLPG------RVGKQCRERYLNHLDPALGKDPWTPEE 344
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A5B7BD63_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BD63_DAVIN) HSP 1 Score: 92.0 bits (227), Expect = 3.100e-20 Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 25 IPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYG-PKWSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
IP +TD+QC+ W V+NPEL KG W EED RI+E LV++YG KWSVIA L R+GKQ RER+ +HLDPA+KK WT E S+
Sbjct: 85 IPGRTDVQCLHRWQKVLNPELVKGP--WTKEEDDRIIE---LVEKYGCKKWSVIAKSLPG------RIGKQCRERWHNHLDPAIKKDAWTKEEESI 169
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A2R5L6N8_9ACAR (Putative transcription factor myb (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L6N8_9ACAR) HSP 1 Score: 92.4 bits (228), Expect = 1.100e-19 Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
P +TD+QC W V+NP+L KG SW EED++++E LVQ+YGPK W++IA LK R+GKQ RER+ +HL+PA+KK WT E ++
Sbjct: 79 PDRTDVQCQQRWQKVVNPDLVKG--SWSKEEDEKVVE---LVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEEETI 162
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A293MX46_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MX46_ORNER) HSP 1 Score: 92.4 bits (228), Expect = 1.110e-19 Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAEASL 309
P +TD+QC W V+NP+L KG SW EED++++E LVQ+YGPK W++IA LK R+GKQ RER+ +HL+PA+KK WT E ++
Sbjct: 86 PDRTDVQCQQRWQKVVNPDLVKG--SWSKEEDEKVVE---LVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEEETI 169
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: UPI0018950A0B (myb-related protein B-like isoform X1 n=4 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018950A0B) HSP 1 Score: 90.5 bits (223), Expect = 5.220e-19 Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
P ++D+QC W+ V+NPEL KG SW EED +++ QLVQ+YGPK W++IA LK R+GKQ RER+ +HL+PA+KK WT E
Sbjct: 97 PDRSDVQCQQRWHKVVNPELVKG--SWSKEEDDKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEE 177
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: UPI00189A85C0 (myb-related protein B-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189A85C0) HSP 1 Score: 90.5 bits (223), Expect = 5.230e-19 Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
P ++D+QC W+ V+NPEL KG SW EED +++ QLVQ+YGPK W++IA LK R+GKQ RER+ +HL+PA+KK WT E
Sbjct: 91 PDRSDVQCQQRWHKVVNPELVKG--SWSKEEDDKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEEE 171
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A8C4ZF19_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZF19_GADMO) HSP 1 Score: 85.9 bits (211), Expect = 6.950e-19 Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 34 KTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
++DLQC W +V++PEL KG W EED+R++ QLV +YGPK WSVIA L SR+GKQ RER+ +HL+PA+KK WT E
Sbjct: 23 RSDLQCQRRWQNVLSPELVKGP--WTKEEDERVI---QLVHKYGPKRWSVIAKHL------HSRIGKQCRERWHNHLNPAVKKSLWTLEE 101
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: UPI0018879D79 (myb-related protein B-like isoform X1 n=3 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI0018879D79) HSP 1 Score: 90.1 bits (222), Expect = 7.130e-19 Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
P ++D+QC W+ V+NPEL KG SW EED +++ QLVQ+YGPK W++IA LK R+GKQ RER+ +HL+PA+KK WT E
Sbjct: 95 PDRSDVQCQQRWHKVVNPELVKG--SWSKEEDDKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEDE 175
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Match: A0A6P7W1S6_IXOSC (myb-related protein A isoform X1 n=8 Tax=Ixodes TaxID=6944 RepID=A0A6P7W1S6_IXOSC) HSP 1 Score: 89.7 bits (221), Expect = 9.780e-19 Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 28 PPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLVQQYGPK-WSVIASRLKAETGKQSRVGKQIRERYLHHLDPALKKGGWTAAE 300
P ++D+QC W+ V+NP+L KG SW EED++++ QLVQ+YGPK W++IA LK R+GKQ RER+ +HL+PA+KK WT E
Sbjct: 114 PDRSDVQCQQRWHKVVNPDLVKG--SWSKEEDEKVV---QLVQKYGPKKWTLIAKHLKG------RIGKQCRERWHNHLNPAIKKSAWTEHE 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50083.12232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50083.12232.1 >prot_H-elongata_contig50083.12232.1 ID=prot_H-elongata_contig50083.12232.1|Name=mRNA_H-elongata_contig50083.12232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp MISLLLFQIPPKTDLQCMLHWNHVINPELTKGKGSWRPEEDQRILEATQLback to top mRNA from alignment at H-elongata_contig50083:295..1195- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50083.12232.1 ID=mRNA_H-elongata_contig50083.12232.1|Name=mRNA_H-elongata_contig50083.12232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at H-elongata_contig50083:295..1195- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50083:295..1195- >mRNA_H-elongata_contig50083.12232.1 ID=mRNA_H-elongata_contig50083.12232.1|Name=mRNA_H-elongata_contig50083.12232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig50083:295..1195- (Himanthalia elongata Himel1 dioecious)back to top |