mRNA_H-elongata_contig49970.12220.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: D8LGG4_ECTSI (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGG4_ECTSI) HSP 1 Score: 281 bits (718), Expect = 6.550e-93 Identity = 148/179 (82.68%), Postives = 164/179 (91.62%), Query Frame = 1
Query: 1 RLQEAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPGLQSDIASK-VPLGRLGTTFEIGMAAVFLLSSAASYVSGDTLV 534
R +E+AEA+V FTVK YGRM+ LVNGAAGNFL+NAHELKLKGFKTVMEIDTVGVFNMS+AAFPALRESGA IINI+MTLHYG TWFQAH+SAAKAAIDSLTR SLA+EWGS+GIRVNGIAPGPIA+TPGMAKL GL D A+K +PLGR+GTTF+IGM AVFL+SSAASYVSGDTLV
Sbjct: 76 RSRESAEASVAFTVKTYGRMDTLVNGAAGNFLANAHELKLKGFKTVMEIDTVGVFNMSSAAFPALRESGAGAIINITMTLHYGATWFQAHASAAKAAIDSLTR-SLAMEWGSYGIRVNGIAPGPIADTPGMAKLSVGLGRDDANKHIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLV 253
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A836CR02_9STRA (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR02_9STRA) HSP 1 Score: 243 bits (620), Expect = 5.710e-78 Identity = 128/181 (70.72%), Postives = 150/181 (82.87%), Query Frame = 1
Query: 1 RLQEAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPGLQSDI---ASKVPLGRLGTTFEIGMAAVFLLSSAASYVSGDTLV 534
R++E+A+ AV FTV +G++N LVNGAAGNFL+NAHEL LKGFKTV+EIDTVGVFNMSTAAFPAL SG + +INISMTLHYG TWFQAH+ AAKAAID+LTR SLALEWG+HGIRV GIAPG IA+TPGMAKL PGL + +VPLGR+G T +I +AAV+L S A +YVSG TLV
Sbjct: 72 RIRESAKGAVDFTVGKFGKLNVLVNGAAGNFLANAHELALKGFKTVLEIDTVGVFNMSTAAFPALAASGDAAVINISMTLHYGATWFQAHACAAKAAIDALTR-SLALEWGAHGIRVAGIAPGAIADTPGMAKLTPGLSAGADWAKERVPLGRMGATRDIALAAVYLCSGAGAYVSGHTLV 251
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A7R9V4F3_9CHLO (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4F3_9CHLO) HSP 1 Score: 212 bits (539), Expect = 1.780e-65 Identity = 113/181 (62.43%), Postives = 134/181 (74.03%), Query Frame = 1
Query: 1 RLQEAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPG---LQSDIASKVPLGRLGTTFEIGMAAVFLLSSAASYVSGDTLV 534
R E E V + +GR++ LVN AAGNFL+ A EL GFKTVMEIDTVG F M AAFP+LR+S A IINIS TL YG TW+Q H+SAAKAA+DSLTR +LALEWG+ G+RVNG+APGPI T GM KLGPG +Q I +PLGR+GT ++IGMA VFL S AAS+V+GDTLV
Sbjct: 94 RSAETCERWVAEVERQFGRLDVLVNCAAGNFLATAEELSQNGFKTVMEIDTVGTFTMCRAAFPSLRKSPAPSIINISATLQYGATWYQVHASAAKAAVDSLTR-TLALEWGAFGVRVNGVAPGPIEGTAGMTKLGPGAGAMQQKIVGSIPLGRMGTKWDIGMACVFLASPAASFVTGDTLV 273
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A7S2KZL5_9STRA (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KZL5_9STRA) HSP 1 Score: 209 bits (532), Expect = 1.160e-64 Identity = 111/180 (61.67%), Postives = 134/180 (74.44%), Query Frame = 1
Query: 13 AAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESG-ASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPGLQSDIASK-----VPLGRLGTTFEIGMAAVFLLSSAASYVSGDTLV 534
A +A V++ + +GR++ L+NGAAGNFL+ A L KGFKTVM+IDT G FNM A FPA+ G IINISMTLHYG TW+QAH+SAAK+AIDSLTR +LALEWG + IRVNGIAPGPI NTPG KL PGL +D ++ +PLGRLG F+IGMAAVFL S A Y++GD LV
Sbjct: 77 ACKAVVEYAMSQFGRVDMLINGAAGNFLAEAKSLTPKGFKTVMDIDTQGTFNMCHAVFPAMSNGGRGGSIINISMTLHYGATWYQAHASAAKSAIDSLTR-TLALEWGCYKIRVNGIAPGPIENTPGTTKLAPGLNADDVAEMMTEGIPLGRLGKAFDIGMAAVFLGSEAGDYITGDILV 255
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A087SNX3_AUXPR (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SNX3_AUXPR) HSP 1 Score: 207 bits (528), Expect = 2.490e-64 Identity = 108/182 (59.34%), Postives = 136/182 (74.73%), Query Frame = 1
Query: 1 RLQEAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPG----LQSDIASKVPLGRLGTTFEIGMAAVFLLSSAASYVSGDTLV 534
R EA EA V V +GR++ LVN AAGNFL+ +L GF+TV+EIDT+G FNM AAFPAL+ SGA I+NIS TLHYG TW+QAH+SAAKAAIDSLTR S+ALEWGS GIRVNG+APGPIA T GM KL PG L +++A +VP+G +G +I +A ++L SSAA +++G T+V
Sbjct: 54 RKYEACEAMVAGAVAKFGRLDVLVNCAAGNFLAAPEQLSSNGFRTVLEIDTLGTFNMCKAAFPALQSSGAGSIVNISATLHYGATWYQAHASAAKAAIDSLTR-SMALEWGSFGIRVNGVAPGPIAGTAGMEKLAPGKASALSAEVARRVPVGHMGERADIALACIYLCSSAAGFITGHTMV 234
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A7S3VH40_9STRA (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VH40_9STRA) HSP 1 Score: 208 bits (530), Expect = 2.780e-64 Identity = 110/177 (62.15%), Postives = 136/177 (76.84%), Query Frame = 1
Query: 22 AAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPGLQSDI-----ASKVPLGRLGTTFEIGMAAVFLLSSAAS-YVSGDTLV 534
AAVQ+T++ GR++ LVNGAAGNFLS A LK KGFKTVMEID +G FNM AA+P+L +SG ++NIS TL YG TW+QAH+SAAK+AIDSLTR +LALEWG IRVNG+APGPIA TPGMAKL PG+ D+ A +P+GR+G F+IGMA V+L A+ +V+GDTLV
Sbjct: 86 AAVQYTLENCGRLDILVNGAAGNFLSEAANLKPKGFKTVMEIDAIGTFNMCHAAYPSLAKSGNGCVVNISATLQYGATWYQAHASAAKSAIDSLTR-TLALEWGRDRIRVNGVAPGPIAGTPGMAKLAPGMDGDVIEEMVAEGIPIGRMGRGFDIGMAVVYLCCDASGGFVTGDTLV 261
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A1D1ZSP8_AUXPR (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZSP8_AUXPR) HSP 1 Score: 207 bits (528), Expect = 4.530e-64 Identity = 108/182 (59.34%), Postives = 136/182 (74.73%), Query Frame = 1
Query: 1 RLQEAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPG----LQSDIASKVPLGRLGTTFEIGMAAVFLLSSAASYVSGDTLV 534
R EA EA V V +GR++ LVN AAGNFL+ +L GF+TV+EIDT+G FNM AAFPAL+ SGA I+NIS TLHYG TW+QAH+SAAKAAIDSLTR S+ALEWGS GIRVNG+APGPIA T GM KL PG L +++A +VP+G +G +I +A ++L SSAA +++G T+V
Sbjct: 74 RKYEACEAMVAGAVAKFGRLDVLVNCAAGNFLAAPEQLSSNGFRTVLEIDTLGTFNMCKAAFPALQSSGAGSIVNISATLHYGATWYQAHASAAKAAIDSLTR-SMALEWGSFGIRVNGVAPGPIAGTAGMEKLAPGKASALSAEVARRVPVGHMGERADIALACIYLCSSAAGFITGHTMV 254
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A7S2S4X8_9STRA (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4X8_9STRA) HSP 1 Score: 207 bits (528), Expect = 6.830e-64 Identity = 111/181 (61.33%), Postives = 139/181 (76.80%), Query Frame = 1
Query: 10 EAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPGLQSD-----IASKVPLGRLGTTFEIGMAAVFLLSSAA-SYVSGDTLV 534
+A AV++T+ +G+++ L+NGAAGNFL+ A LK KGFKTVMEIDT+G FNMS A+PAL+ SG IINIS TL YG TW+Q+H+SAAK+A DSLTR SLALEWG IRVNGIAPGPIA+TPG KL PGL S+ I+ +P+GR+GTT +IGMAA++L S + SYV+GD LV
Sbjct: 89 DACAQAVRYTLAQFGKLDILINGAAGNFLAEASALKPKGFKTVMEIDTMGTFNMSHLAYPALKNSGRGCIINISATLQYGATWYQSHASAAKSANDSLTR-SLALEWGVDNIRVNGIAPGPIADTPGTTKLAPGLTSEDVNEAISEGIPIGRMGTTTDIGMAAIYLASDGSGSYVTGDILV 268
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: B8C746_THAPS (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C746_THAPS) HSP 1 Score: 204 bits (520), Expect = 8.240e-63 Identity = 116/188 (61.70%), Postives = 139/188 (73.94%), Query Frame = 1
Query: 10 EAAEAAVQFTVKAYGRMNALVNGAAGNFL--SNAHELKLKGFKTVMEIDTVGVFNMSTAAFPAL--RESGAS---DIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPGLQSD-----IASKVPLGRLGTTFEIGMAAVFLLSSAAS-YVSGDTLV 534
EA +A V++ V+ +GR++ L+NGAAGNFL S A L KGFKTVM+ID G FNM +A +PA+ R G IINISMTLHYG TW+QAH+SAAK+AIDSLTR +LALEWG GIRVNGIAPGPIA+TPG KL PGL +D IA +VP+GRLG F+IGMAAV+L A+ YVSGD LV
Sbjct: 73 EACKAVVEYAVQQFGRVDVLINGAAGNFLGKSEAKSLTPKGFKTVMDIDAQGTFNMCSAVYPAMAKRNGGGGRGGTIINISMTLHYGATWYQAHASAAKSAIDSLTR-TLALEWGCDGIRVNGIAPGPIADTPGTTKLAPGLTADDVEEMIAERVPMGRLGRAFDIGMAAVYLACDASGGYVSGDVLV 259
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Match: A0A485L580_9STRA (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L580_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.190e-62 Identity = 110/179 (61.45%), Postives = 133/179 (74.30%), Query Frame = 1
Query: 1 RLQEAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDTVGVFNMSTAAFPALRESGASDIINISMTLHYGTTWFQAHSSAAKAAIDSLTRLSLALEWGSHGIRVNGIAPGPIANTPGMAKLGPGLQSDIASKV-PLGRLGTTFEIGMAAVFLLSSAASYVSGDTLV 534
R E AEAAV VK YG +N LVNGAAGNFLS A EL F+TV++IDTVG FNM+ + FP L+ + IINIS LH TW+Q H+SAAKAAIDSLTR SLALEWG + IRV GIAPGPIA+TPGMAKLG G D+ +K+ PLGR+GT E+G AVFL+S A +++SGDT++
Sbjct: 74 RKPEDAEAAVALAVKTYGTLNVLVNGAAGNFLSTAEELSTNAFRTVLDIDTVGAFNMARSVFPHLKNNDGV-IINISANLHLYATWYQVHASAAKAAIDSLTR-SLALEWGRYQIRVVGIAPGPIADTPGMAKLGGGAAEDMVNKIIPLGRMGTKVEMGQVAVFLVSKAGAFISGDTIL 250 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49970.12220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49970.12220.1 >prot_H-elongata_contig49970.12220.1 ID=prot_H-elongata_contig49970.12220.1|Name=mRNA_H-elongata_contig49970.12220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp RLQEAAEAAVQFTVKAYGRMNALVNGAAGNFLSNAHELKLKGFKTVMEIDback to top mRNA from alignment at H-elongata_contig49970:2505..3795+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49970.12220.1 ID=mRNA_H-elongata_contig49970.12220.1|Name=mRNA_H-elongata_contig49970.12220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1291bp|location=Sequence derived from alignment at H-elongata_contig49970:2505..3795+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49970:2505..3795+ >mRNA_H-elongata_contig49970.12220.1 ID=mRNA_H-elongata_contig49970.12220.1|Name=mRNA_H-elongata_contig49970.12220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig49970:2505..3795+ (Himanthalia elongata Himel1 dioecious)back to top |