mRNA_H-elongata_contig49949.12217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49949.12217.1
Unique NamemRNA_H-elongata_contig49949.12217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49949.12217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49949contigH-elongata_contig49949:234..793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004740.1
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.6467328-CDS-H-elongata_contig49949:233..3741622930822.6467328-CDS-H-elongata_contig49949:233..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49949 234..374 +
1691679585.4785736-CDS-H-elongata_contig49949:233..3741691679585.4785736-CDS-H-elongata_contig49949:233..374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49949 234..374 +
1622930822.6828432-CDS-H-elongata_contig49949:703..7931622930822.6828432-CDS-H-elongata_contig49949:703..793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49949 704..793 +
1691679585.4902184-CDS-H-elongata_contig49949:703..7931691679585.4902184-CDS-H-elongata_contig49949:703..793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49949 704..793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49949.12217.1prot_H-elongata_contig49949.12217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49949 234..793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49949.12217.1

>prot_H-elongata_contig49949.12217.1 ID=prot_H-elongata_contig49949.12217.1|Name=mRNA_H-elongata_contig49949.12217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RDTRSLNAARSEVEKYAAVRNLVERNERLQQLLVHRDRELEALKRTQEWS
AVTETAAITEEYFVEIQRLRRVLALHH
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mRNA from alignment at H-elongata_contig49949:234..793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49949.12217.1 ID=mRNA_H-elongata_contig49949.12217.1|Name=mRNA_H-elongata_contig49949.12217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=560bp|location=Sequence derived from alignment at H-elongata_contig49949:234..793+ (Himanthalia elongata Himel1 dioecious)
AGGGACACAAGATCGCTGAATGCCGCGCGTTCTGAGGTGGAGAAGTACGC
TGCAGTAAGAAATTTAGTTGAGCGAAACGAACGACTGCAACAGCTGCTGG
TTCACCGAGATAGAGAACTCGAGGCGCTTAAACGAACACAGGTTAGCGGG
TGATGATTGGATCATCGCACATCAGAGCTGCTGTTGGTCTTTTAACCTGT
AATGTTATGGTCTGCCTAGAGCTGAAGATCACAAAGGATGCGTCTCGCAT
CGAACCAGTTTGTTCTTCGCTGTAGATTCCAATGTTGTGGCACCCCCAGT
GCCTTGCCTTTCGTCGAGCGAGCTACAGGAGGCACCATACAGTCGTCCAA
GAGAGCTTGTTGATGTGAGTTGCACGTCGATACCAGATAGTCGTATTGCT
CTTGAGAGCCCGCTCGTACTCTTGCCTACTACAAACTGGTCCTTTTTCGC
TCCGATCCTCGCCTGGGCAGGAATGGTCGGCTGTGACCGAGACGGCCGCA
ATAACAGAGGAGTACTTCGTCGAAATCCAAAGACTGCGGCGAGTCTTGGC
GCTACATCAT
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Coding sequence (CDS) from alignment at H-elongata_contig49949:234..793+

>mRNA_H-elongata_contig49949.12217.1 ID=mRNA_H-elongata_contig49949.12217.1|Name=mRNA_H-elongata_contig49949.12217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig49949:234..793+ (Himanthalia elongata Himel1 dioecious)
AGGGACACAAGATCGCTGAATGCCGCGCGTTCTGAGGTGGAGAAGTACGC
TGCAGTAAGAAATTTAGTTGAGCGAAACGAACGACTGCAACAGCTGCTGG
TTCACCGAGATAGAGAACTCGAGGCGCTTAAACGAACACAGAGGGACACA
AGATCGCTGAATGCCGCGCGTTCTGAGGTGGAGAAGTACGCTGCAGTAAG
AAATTTAGTTGAGCGAAACGAACGACTGCAACAGCTGCTGGTTCACCGAG
ATAGAGAACTCGAGGCGCTTAAACGAACACAGGAATGGTCGGCTGTGACC
GAGACGGCCGCAATAACAGAGGAGTACTTCGTCGAAATCCAAAGACTGCG
GCGAGTCTTGGCGCTACATCATGAATGGTCGGCTGTGACCGAGACGGCCG
CAATAACAGAGGAGTACTTCGTCGAAATCCAAAGACTGCGGCGAGTCTTG
GCGCTACATCAT
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