mRNA_H-elongata_contig499.12210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig499.12210.1
Unique NamemRNA_H-elongata_contig499.12210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 6.370e-115
Identity = 192/311 (61.74%), Postives = 226/311 (72.67%), Query Frame = 2
Query:   80 LVVFALGLANISRIDALIVPGAL--FPAPFHAPLST---HVSRIASWRGGAVERDAGRSPTMNVQLGLVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVAR---KKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEVRRAVEDRVHRAAPSA 988
            L + A+GLA      AL+ P  L    A  HA  +    HV +IASWRGGAVE   G  P MNVQLGLVRVAGYGIIAGS+CLKTPQIARVW A+SL GLAPAS+YADVFLFATSV+YHVLK+NPIRAYGESV++L QT++MV L+WRFG ++       GG     V +   K +PAGGG +GRT IV GS  A  L + YLP  +WGLL++ STP ILAVQLPQI+KN  QKHTGELAVLTV LA +GSSIR  TT+ADLGGDPWLLFNY+LG  +N  +L QI  YR+ TA V R VE + H+AA +A
Sbjct:    7 LSLLAVGLAAAPTGCALVPPTPLPRTTAGGHAAATARGKHVRQIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKKNPIRAYGESVVVLFQTLVMVGLLWRFGAEEEVAVSDGGGDEEALVTKSTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYVLGATSNATILAQIYLYRALTATVGRDVEAKAHKAAHAA 317          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A6H5K508_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K508_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 7.830e-100
Identity = 163/253 (64.43%), Postives = 193/253 (76.28%), Query Frame = 2
Query:  248 MNVQLGLVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDD---VGIGKASGGKSGGEVAR---KKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEVRRAVEDRVHRAAPSA 988
            MN QLGLVRVAGYGIIAGS+CLKTPQIARVW A+SL GLAPAS+YADVFLFATSV+YHVLKRNPIRAYGESV++L QT++MV L+WRFG ++   V  G          V +   K +PAGGG LGRT I +GS  A  L + YLP  +WGLL+V STP ILAVQLPQI+KN  QKHTGELA+LTV LA  GSS+R  TT+ADLGGDPWLLFNY+LG  +N  +L QI  YR+ TA+VRR V+ +  +A  +A
Sbjct:    1 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGXXXXXXXXALVTKSIKKVKPAGGGPLGRTAIAVGSVAASVLCVLYLPERLWGLLVVVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIADLGGDPWLLFNYILGATSNATILAQIYLYRALTAKVRRDVKAKADKATHAA 253          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A836CGJ2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.070e-35
Identity = 92/223 (41.26%), Postives = 124/223 (55.61%), Query Frame = 2
Query:  272 RVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTM-QYLPPSMWG-LLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRT 934
            ++AG GII GS+ +K PQI R+  ARS+ GL+  + Y +V L +  V+YH  K  P  AYGE+  +LVQ +I+VALMWR+    +                K R           +   +AT VAL +  Y  P  W  LL++SSTP IL V +PQI  N  Q HTG+++ +TV L L GS+IR  TTL ++G D  LL NY LG V NG+L+ Q    R  T
Sbjct:   51 KLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPM----------------KHR----------AMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDAT 247          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A485KEC0_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEC0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 7.040e-32
Identity = 85/223 (38.12%), Postives = 124/223 (55.61%), Query Frame = 2
Query:  272 RVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALT--MQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRT 934
            +V GY II GS  LK PQI ++  A ++AGL P+S Y +V  F  SV+Y+V++  PI  +GES+ IL+Q +I+VA++W +                      K PA       +T +LG AT VAL   M +LP     +L  SS P  +  ++PQI+ N  Q HTG+LA +T+FL   GS+ R +TTL + G D  +L  +L+ ++ NG L+ QI  Y   T
Sbjct:   42 KVLGYLIILGSFILKVPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVIRGYPISTWGESLTILIQNIILVAMLWVY---------------------SKAPA-------STQLLGVATFVALGAGMLHLPSEFDWVLPASSIPLSVMARIPQIFSNFKQGHTGQLAFITLFLNFGGSAARLFTTLQETG-DQVVLLGFLISMLLNGTLIAQILIYWKAT 235          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A7S2BZY0_9STRA (Solute carrier family 66 member 3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZY0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.100e-28
Identity = 72/226 (31.86%), Postives = 123/226 (54.42%), Query Frame = 2
Query:  266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEV 943
            + ++ GYGI+A +  LK PQI +V +A++  GL+  +LY DVFL+  + MY++   NP+ A+GE +I++VQ + +V L+WR+ +    +   +G                        VL  A  VA+++  LPP    LL   + P ++  ++ QI KN+   HTG L+  ++ + +    +R +TT+  +G D  +L  Y L V +NG+LL QI  Y + T++V
Sbjct:    3 IAKILGYGILASNTTLKVPQIRKVVQAKATTGLSAMALYLDVFLYLNAAMYNITMGNPLSAWGELLIVIVQNVALVLLLWRYSLPAPSLAAKAG-----------------------AVLMLAAHVAISLN-LPPGYRYLLPTLNLPCMIITRIAQIRKNMANGHTGLLSTTSLVMNISTVLVRVFTTVVLVGWDWNILRAYGLSVTSNGVLLGQIAYYGANTSKV 204          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A7S0AK72_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AK72_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.490e-24
Identity = 64/226 (28.32%), Postives = 114/226 (50.44%), Query Frame = 2
Query:  266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGS-ATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAE 940
            +V+  G GII G+   K P    V + +S+AGL+  ++Y +  ++  S  Y +L+ NP  AYGE++++ +QT+IMV  +W++    V                         + +  +  G+ AT   +  + L P  + LL+ S+ P ++  +  Q+ +    KHTG  +++T  + LLGS+IR  TT+ ++G D  LL  Y+L    N +L+ Q   Y+  T +
Sbjct:   46 IVKGLGIGIILGACLNKAPLFINVLKTKSVAGLSTGAIYGEAIMYCNSAFYGILRANPFTAYGENLVVALQTVIMVTFIWKYREPIV------------------------TMPQRLLAAGAFATYCFVVFKVLTPEQYPLLVTSNLPVLVYSRGSQVIETFSLKHTGTNSIITTGMNLLGSAIRIVTTIQEIGWDMALLRGYMLSAFLNVVLVLQFFIYKDNTTK 247          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A6S9F6Q6_9STRA (Solute carrier family 66 member 3 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9F6Q6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.100e-23
Identity = 67/229 (29.26%), Postives = 121/229 (52.84%), Query Frame = 2
Query:  272 RVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEVRRAVE 958
            +V G GII G+  +K P +  + + +S+AGL+  + Y +V ++  S  Y +L+ NP  AYGE+  + +Q++++  ++W+F  D                 ++K  A       TTI  G    V   +  LP   +  L+ ++ PA++  +  QI      +HTG  +V+T+ + LLGS IR +TT+ ++G D  LL  YLL +V N +L++Q   ++  T E  ++++
Sbjct:   48 KVLGIGIILGACLVKLPILLNILKNKSVAGLSAGATYGEVIMYWNSAFYGILRGNPFTAYGENFAVAIQSLVITLMLWQFQKDPA------------FTMQQKATA-------TTIFAGY---VIFVLNALPEEYYYTLVAANWPALMYSRGSQIIDFARLRHTGTNSVITMSMNLLGSLIRVFTTIKEVGWDLPLLSGYLLSIVLNVVLVSQYFLFKENTEEFLKSLK 254          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A4E0RPL3_FASHE (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0RPL3_FASHE)

HSP 1 Score: 101 bits (251), Expect = 4.820e-21
Identity = 71/226 (31.42%), Postives = 116/226 (51.33%), Query Frame = 2
Query:  245 TMNVQLGLVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAY 922
            T+  +LGL ++ GYG++ GS  +K PQI ++ +A+S AGL+  SL  ++  F +S  Y V KR P  +YGES+ +  QT ++  +   + V  V                       GL+     V  + TA+ L+    P S    L   + P +++ +L QIY N +   TG+L+ +TV L  LGS+ R +T++ + G D  ++  +LL  + N ILL Q+  Y
Sbjct:   28 TVCFKLGLSKLLGYGVVLGSSLVKVPQIIKILKAKSGAGLSVPSLLLELLTFTSSFAYSVAKRFPFSSYGESIFLAFQTFLITWMTIGWEVSQVA----------------------GLV--FAAVFAAFTAITLSPAT-PISALYTLQTLNVPIVVSAKLLQIYANWYNGSTGQLSAITVVLFALGSTARIFTSIQETG-DSLIIVTFLLSTLCNYILLAQVVYY 227          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: UPI0011D01DDC (LOW QUALITY PROTEIN: mannose-P-dolichol utilization defect 1 protein n=1 Tax=Strigops habroptila TaxID=2489341 RepID=UPI0011D01DDC)

HSP 1 Score: 98.6 bits (244), Expect = 6.410e-20
Identity = 76/223 (34.08%), Postives = 110/223 (49.33%), Query Frame = 2
Query:  266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRT 934
            L +V GYGI+AGSV +K PQ+ RV  ARS AGL+   +  ++   A SV Y   +  P  A+GE++ +L+QTM +  LM  FG           G +G  V          L+    ++LG     AL     PP +   L  ++ P I+  +L Q   N  Q HTG+L+ +T  L   G+  R +T+L + G DP L   +      NG+LL Q+  YR  T
Sbjct:   52 LSKVLGYGIVAGSVMVKLPQVLRVLGARSGAGLSVPGVLLELLALAGSVAYGCSRAFPFSAWGEALFLLLQTMTLGFLMQHFG-----------GHTGRGVL---------LVAGYWVLLG-----ALLSPTPPPGLITFLQAANLPIIILSRLLQAATNYRQGHTGQLSGVTTTLLFGGALARVFTSLQETG-DPLLALTFATSAACNGLLLGQLLYYRGGT 248          
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A1Z5KGW1_FISSO (Mannose-P-dolichol utilization defect 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGW1_FISSO)

HSP 1 Score: 98.6 bits (244), Expect = 9.880e-20
Identity = 68/232 (29.31%), Postives = 114/232 (49.14%), Query Frame = 2
Query:  266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAE-VRRAVE 958
            + ++ G  IIAG+   K P I  +    S  GL+  S+YADV ++A    Y  L+ +P+ AYGE+  +++Q+ +++ L+W+F    + + +                          +V G A  V ++  +LP     LLI S  P ++  +  Q+Y     KHTG  +++T  + L GS IR  TTL ++G D  +L  + + VV NG+ L Q   Y   T + V+R+ E
Sbjct:   45 VAKLLGVAIIAGAFLNKAPVIVNLIDTESTEGLSRGSVYADVLVYANGFAYGFLEGHPVTAYGENAALVLQSFVILLLVWKF-TPVISLAEKF----------------------LVVVAGLAYVVGVSW-FLPAWQHYLLIASQWPIMMYARGSQLYATYQVKHTGAQSIITTLMNLAGSLIRIMTTLKEVGWDLPVLTGFGIAVVLNGLTLLQFMVYWENTRQFVKRSSE 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNI5_ECTSI6.370e-11561.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K508_9PHAE7.830e-10064.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGJ2_9STRA4.070e-3541.26Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A485KEC0_9STRA7.040e-3238.12Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A7S2BZY0_9STRA6.100e-2831.86Solute carrier family 66 member 3 n=1 Tax=Florenci... [more]
A0A7S0AK72_9STRA8.490e-2428.32Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6S9F6Q6_9STRA2.100e-2329.26Solute carrier family 66 member 3 n=1 Tax=Ditylum ... [more]
A0A4E0RPL3_FASHE4.820e-2131.42Mannose-P-dolichol utilization defect 1 protein ho... [more]
UPI0011D01DDC6.410e-2034.08LOW QUALITY PROTEIN: mannose-P-dolichol utilizatio... [more]
A0A1Z5KGW1_FISSO9.880e-2029.31Mannose-P-dolichol utilization defect 1 n=2 Tax=Fi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig499contigH-elongata_contig499:9334..13012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.1
Seed ortholog evalue3.4e-92
Seed eggNOG ortholog2880.D8LNI5
KEGG koko:K09660
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3211@1,KOG3211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01003
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPQ-loop repeat
Ec32 orthologEc-24_002970.1
Exons4
Model size1224
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig499.12210.1prot_H-elongata_contig499.12210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig499 9567..12966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.9213686-UTR-H-elongata_contig499:9333..95661622930821.9213686-UTR-H-elongata_contig499:9333..9566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig499 9334..9566 -
1691679585.0974298-UTR-H-elongata_contig499:9333..95661691679585.0974298-UTR-H-elongata_contig499:9333..9566Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig499 9334..9566 -
1622930822.0140522-UTR-H-elongata_contig499:12966..130121622930822.0140522-UTR-H-elongata_contig499:12966..13012Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig499 12967..13012 -
1691679585.1478817-UTR-H-elongata_contig499:12966..130121691679585.1478817-UTR-H-elongata_contig499:12966..13012Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig499 12967..13012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.941215-CDS-H-elongata_contig499:9566..97221622930821.941215-CDS-H-elongata_contig499:9566..9722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 9567..9722 -
1691679585.109456-CDS-H-elongata_contig499:9566..97221691679585.109456-CDS-H-elongata_contig499:9566..9722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 9567..9722 -
1622930821.962058-CDS-H-elongata_contig499:10071..105901622930821.962058-CDS-H-elongata_contig499:10071..10590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 10072..10590 -
1691679585.1182902-CDS-H-elongata_contig499:10071..105901691679585.1182902-CDS-H-elongata_contig499:10071..10590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 10072..10590 -
1622930821.9820476-CDS-H-elongata_contig499:11747..118741622930821.9820476-CDS-H-elongata_contig499:11747..11874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 11748..11874 -
1691679585.1304033-CDS-H-elongata_contig499:11747..118741691679585.1304033-CDS-H-elongata_contig499:11747..11874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 11748..11874 -
1622930821.9996455-CDS-H-elongata_contig499:12823..129661622930821.9996455-CDS-H-elongata_contig499:12823..12966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 12824..12966 -
1691679585.1385508-CDS-H-elongata_contig499:12823..129661691679585.1385508-CDS-H-elongata_contig499:12823..12966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig499 12824..12966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig499.12210.1

>prot_H-elongata_contig499.12210.1 ID=prot_H-elongata_contig499.12210.1|Name=mRNA_H-elongata_contig499.12210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp
MASAMERVRWMLVVFALGLANISRIDALIVPGALFPAPFHAPLSTHVSRI
ASWRGGAVERDAGRSPTMNVQLGLVRVAGYGIIAGSVCLKTPQIARVWRA
RSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVA
LMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVA
LTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLA
LLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEVR
RAVEDRVHRAAPSA*
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mRNA from alignment at H-elongata_contig499:9334..13012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig499.12210.1 ID=mRNA_H-elongata_contig499.12210.1|Name=mRNA_H-elongata_contig499.12210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3679bp|location=Sequence derived from alignment at H-elongata_contig499:9334..13012- (Himanthalia elongata Himel1 dioecious)
CGCACCGATAATGCTGCTGCATCATGACCCAATCCTGCTGAGCTAAATGG CTTCAGCGATGGAGCGTGTTCGATGGATGTTGGTGGTGTTCGCTCTGGGC CTTGCGAATATATCGAGGATCGATGCTCTCATCGTGCCCGGTGCTTTATT TCCTGCACCGTTCCACGCACCCCTTTCGACGCACGTCAGGTGACTTTCGA AAGAAAGAACTTCCCCATGCTGCATGCTCAGTCCCGTATGCCAACGCATG TACTGTTATGAAAATGTCACGAGACGGTTGATATTGGCAATCGGTTTATT TATCATGCTGTATCCTAGTTCTGATGTGCTCTTTGGCTCGCTCTTGGGGC GCCTGTCCCAATGAGGGTGGAATCATCTTGACTTTCAGCGTCAGCTCTCT TCCACAAGTCAGAGCAAAATACAAACAAATACTCACAACGGCAAATCAAT CAATTGTGCCTCCAATGATGTCTGTGACTGTATCGCACATATCCGCTGTA CCAATCGTGAGTGTGGGAAAAGAGAGACGCACAATAATTGGTCCATGAGT TTACATGAATAGGCTGCACTTGTTACTCAAGCTCCCTTGAGGACTGTGGG CCGGCTGTGGGCTCAGTGTCGACGGGCTCTCGGTGGTAAACACGATCGGT ACGCAATTGCGTGACTTGATGAAATCAGGATGGTCCGATGGCGGTTGACG GTAGAGATGGACGCCGTCGCGGAAAACGAGAGAATCGAGAGGATCCCGGG AGTACGCACCAGATTCAGTCTGTGTTGAGAGAAGAGCACGCTGACGCAGG ACGAGATTGCTGAATCTATCTTTCGAGACCAAATTCTCAGGCGCGAACGG GGACAGGGAAGATTCATTTTCCCTTTTTACTTCAGTATTAAATGGCAATA GACCACGCAAACCGACATGACACATAAGGGGGCGCCACACCAGTTTACAA ATACGCCTTTCTGGGGAGCTATCCCTGAAGACGTTAGATTGGCTGTTCAG CTGTTCACAAGCAGGAGGTAACCATCTTTTCTGCTCTATGTGATGACCAC ATATCATTGGATAATTCGGCATTGAAAGTCGAAATCCTAACTTTTATTAT TTACTTTATAATACCAATTATGTCCTCGGTGGGTGCAGTCGAATCGCATC ATGGAGAGGAGGGGCAGTCGAACGTGACGCTGGCCGATCACCAACAATGA ATGTGCAGCTTGGACTGGTCAGGGTCGCTGGCTACGGTATAATCGCCGGT TCTGTGTGCCTCAAGGTACGGCGTCAAGGATGTACCTCGTGACGCCATGC GAAGATCGATGGCATTGACGATATCACAACGATAGTATTTTCGACACACC ACTTACAAGTGCTATATACGAGTATACTTTTCACGGTACAATACTCGCCG CGACTGCAGTAGATCTCTTCTCGAGAGGTGCTACCTCTCTCGCGATAACG TTGATGGGACCCTTTATAATATAGATACTTCCAATACAGCAGTACGATCC GCTGTACGAGTGAAAGGTCCCAAAACACTTAAGATTTTAAGATAGAAGCC ATCGCCACGTAAGCCATCATTGCCGAAGTCATGGTGTTCGAACTCTTGTC AGGATGGTGTTTTAGGATCTATAGTTTCTACACAGTAGTGCCGCTATTAA AACGAGAATAAGCAGGAGTGGATGTTCGGAGGGATTGGATGAGTTCATAT GTTTTTTAAAAGAAAAATGCGAATAAGCAAGGTTCAACCATTGATTTGAC GAGGGCCTTCCGAATGGTGGTTTTTCTACCTTGTGACCACGGACTAGATT TTGACATCAGCTTCTGTAATAATTCAATCAATCAATCAAAGTCAAAGTAG CGCCAAACTTCAATCGCGCCCCAACTTTTTTGTGTTTCTTTTTTGTTCTT CTTTGGAGATGTCGCTTTTCCGAGTATTTGTATTGTGCACCATTATTGTC GTTTCCTTTTGTATTGGAGAGTATTTTGAATGTTTTTCTCCTTCCGGATG GTGTTTTTTTTTTTTTTTTACCACGGGCTGGATTTTGACATCAGCTTATG TGAGAAATCAAAAAAGAATCATAGACGTGCACCGAAGAGAGGATGGGGTT GGTCCTTCTAGGGCCACACAGGAAATGGACAAACACCGTATCACTAAATG AGGTTGGCAAACTTACTTGGAGAGAGCTTATCGACAGAAAAGTTAGATAA CAAAAAAAAAAGGCTCGTCACGCCCTATGTGTGAAGCATGACTGACTGCT TGCCCTTTCCGCGATACGCCCTTGTTCTCTGTCTTTGTTACGGTTCTAAA GTGGGTTGTGTACCAAACGTCTGACTCAAAATGCATGAAGGGCTACTGAG AATGCACCATTATTTTCGGATTTCCTGGCACCTTTTATTTACCACATGCT CGATTACCCCTTCTCTACCCAGACGCCGCAGATAGCTCGTGTGTGGCGCG CTAGATCGCTGGCAGGCTTGGCGCCTGCCTCTCTCTACGCGGACGTTTTT CTCTTCGCGACCAGCGTGATGTACCACGTTCTCAAGCGGAATCCTATCCG AGCGTACGGCGAGTCCGTGATCATCTTGGTGCAGACGATGATCATGGTCG CCCTCATGTGGCGCTTCGGTGTAGACGACGTTGGCATTGGAAAAGCCTCC GGCGGCAAGAGTGGTGGCGAGGTCGCTCGGAAGAAGAGACCCGCGGGGGG AGGCTTGTTAGGGCGGACAACGATAGTGCTGGGATCGGCGACGGCCGTGG CGCTAACCATGCAGTACCTGCCGCCTTCCATGTGGGGTTTGCTCATTGTG TCGTCGACGCCGGCCATCCTGGCGGTACAACTGCCTCAGATTTACAAAAA CTTGTGGCAAAAGCACACGGGGGAGCTAGCGGTGCTGACCGTGTTTTTAG CGTTGTTGGGGTCGTCGATCCGGACCTGGACCACCTTGGCGGTGAGATTT CGATTTTGCGAACGCGCGGGGAAGCTCTTCTCCTGCCGGCGGCCATGATC TGGCGTTGCCACATATTACTCCAGAGAGTTACGGTAGCTGGTGTTTGCGA AGTCCTCCACGTCGACACATTTAACACCTTTGGTTTCAGAGGTACGGCAT CCCTTGAGCTAGGTACACTATTTATAGTATCTTTGGAAAAAAAAGGCTCT ATGTTTATCACCCTCGTGAAACTGGAAAGAACAGCCGCATCGGTTGCGGC TTCAACTGAACTTATTCCGCCTTCCCCTGCATCCCAAATGCCCCGTATCG TCTCTCCTCGGATGGATACTATTAATATTATTAATATCAGGATCTGGGAG GGGATCCCTGGCTCCTGTTTAACTATCTGCTAGGGGTGGTCACGAACGGC ATCCTGCTGACGCAAATAAGGGCTTACAGATCTCGCACGGCCGAGGTTCG ACGGGCTGTCGAGGACAGAGTCCACCGAGCTGCTCCTTCCGCCTGAACGG GGTGCATAACAGCACGGAAGAAGAGTGATTGTTCGGTGGTACTTCGGTGG CGTAGCGTAGGCGATTTGGGAAGACCTTAGCCCTATGTTTTATGTTAAGC GCTTAAAGAAACGAGCTCGTCCGCTAGGCGTGAAGGATCGATGGACTAAA CTTAACTAAAGCTGGGCTTGATTTGCTCGGAGATAAGCGTCATCGTTTTG AACGTGAAGGAAATTGAAATAACCGTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig499:9334..13012-

>mRNA_H-elongata_contig499.12210.1 ID=mRNA_H-elongata_contig499.12210.1|Name=mRNA_H-elongata_contig499.12210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig499:9334..13012- (Himanthalia elongata Himel1 dioecious)
ATGGCTTCAGCGATGGAGCGTGTTCGATGGATGTTGGTGGTGTTCGCTCT
GGGCCTTGCGAATATATCGAGGATCGATGCTCTCATCGTGCCCGGTGCTT
TATTTCCTGCACCGTTCCACGCACCCCTTTCGACGCACGTCAGATGGCTT
CAGCGATGGAGCGTGTTCGATGGATGTTGGTGGTGTTCGCTCTGGGCCTT
GCGAATATATCGAGGATCGATGCTCTCATCGTGCCCGGTGCTTTATTTCC
TGCACCGTTCCACGCACCCCTTTCGACGCACGTCAGTCGAATCGCATCAT
GGAGAGGAGGGGCAGTCGAACGTGACGCTGGCCGATCACCAACAATGAAT
GTGCAGCTTGGACTGGTCAGGGTCGCTGGCTACGGTATAATCGCCGGTTC
TGTGTGCCTCAAGTCGAATCGCATCATGGAGAGGAGGGGCAGTCGAACGT
GACGCTGGCCGATCACCAACAATGAATGTGCAGCTTGGACTGGTCAGGGT
CGCTGGCTACGGTATAATCGCCGGTTCTGTGTGCCTCAAGACGCCGCAGA
TAGCTCGTGTGTGGCGCGCTAGATCGCTGGCAGGCTTGGCGCCTGCCTCT
CTCTACGCGGACGTTTTTCTCTTCGCGACCAGCGTGATGTACCACGTTCT
CAAGCGGAATCCTATCCGAGCGTACGGCGAGTCCGTGATCATCTTGGTGC
AGACGATGATCATGGTCGCCCTCATGTGGCGCTTCGGTGTAGACGACGTT
GGCATTGGAAAAGCCTCCGGCGGCAAGAGTGGTGGCGAGGTCGCTCGGAA
GAAGAGACCCGCGGGGGGAGGCTTGTTAGGGCGGACAACGATAGTGCTGG
GATCGGCGACGGCCGTGGCGCTAACCATGCAGTACCTGCCGCCTTCCATG
TGGGGTTTGCTCATTGTGTCGTCGACGCCGGCCATCCTGGCGGTACAACT
GCCTCAGATTTACAAAAACTTGTGGCAAAAGCACACGGGGGAGCTAGCGG
TGCTGACCGTGTTTTTAGCGTTGTTGGGGTCGTCGATCCGGACCTGGACC
ACCTTGGCGACGCCGCAGATAGCTCGTGTGTGGCGCGCTAGATCGCTGGC
AGGCTTGGCGCCTGCCTCTCTCTACGCGGACGTTTTTCTCTTCGCGACCA
GCGTGATGTACCACGTTCTCAAGCGGAATCCTATCCGAGCGTACGGCGAG
TCCGTGATCATCTTGGTGCAGACGATGATCATGGTCGCCCTCATGTGGCG
CTTCGGTGTAGACGACGTTGGCATTGGAAAAGCCTCCGGCGGCAAGAGTG
GTGGCGAGGTCGCTCGGAAGAAGAGACCCGCGGGGGGAGGCTTGTTAGGG
CGGACAACGATAGTGCTGGGATCGGCGACGGCCGTGGCGCTAACCATGCA
GTACCTGCCGCCTTCCATGTGGGGTTTGCTCATTGTGTCGTCGACGCCGG
CCATCCTGGCGGTACAACTGCCTCAGATTTACAAAAACTTGTGGCAAAAG
CACACGGGGGAGCTAGCGGTGCTGACCGTGTTTTTAGCGTTGTTGGGGTC
GTCGATCCGGACCTGGACCACCTTGGCGGATCTGGGAGGGGATCCCTGGC
TCCTGTTTAACTATCTGCTAGGGGTGGTCACGAACGGCATCCTGCTGACG
CAAATAAGGGCTTACAGATCTCGCACGGCCGAGGTTCGACGGGCTGTCGA
GGACAGAGTCCACCGAGCTGCTCCTTCCGCCTGAGATCTGGGAGGGGATC
CCTGGCTCCTGTTTAACTATCTGCTAGGGGTGGTCACGAACGGCATCCTG
CTGACGCAAATAAGGGCTTACAGATCTCGCACGGCCGAGGTTCGACGGGC
TGTCGAGGACAGAGTCCACCGAGCTGCTCCTTCCGCCTGA
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