mRNA_H-elongata_contig499.12210.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI) HSP 1 Score: 347 bits (890), Expect = 6.370e-115 Identity = 192/311 (61.74%), Postives = 226/311 (72.67%), Query Frame = 2
Query: 80 LVVFALGLANISRIDALIVPGAL--FPAPFHAPLST---HVSRIASWRGGAVERDAGRSPTMNVQLGLVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVAR---KKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEVRRAVEDRVHRAAPSA 988
L + A+GLA AL+ P L A HA + HV +IASWRGGAVE G P MNVQLGLVRVAGYGIIAGS+CLKTPQIARVW A+SL GLAPAS+YADVFLFATSV+YHVLK+NPIRAYGESV++L QT++MV L+WRFG ++ GG V + K +PAGGG +GRT IV GS A L + YLP +WGLL++ STP ILAVQLPQI+KN QKHTGELAVLTV LA +GSSIR TT+ADLGGDPWLLFNY+LG +N +L QI YR+ TA V R VE + H+AA +A
Sbjct: 7 LSLLAVGLAAAPTGCALVPPTPLPRTTAGGHAAATARGKHVRQIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKKNPIRAYGESVVVLFQTLVMVGLLWRFGAEEEVAVSDGGGDEEALVTKSTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYVLGATSNATILAQIYLYRALTATVGRDVEAKAHKAAHAA 317
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A6H5K508_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K508_9PHAE) HSP 1 Score: 306 bits (784), Expect = 7.830e-100 Identity = 163/253 (64.43%), Postives = 193/253 (76.28%), Query Frame = 2
Query: 248 MNVQLGLVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDD---VGIGKASGGKSGGEVAR---KKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEVRRAVEDRVHRAAPSA 988
MN QLGLVRVAGYGIIAGS+CLKTPQIARVW A+SL GLAPAS+YADVFLFATSV+YHVLKRNPIRAYGESV++L QT++MV L+WRFG ++ V G V + K +PAGGG LGRT I +GS A L + YLP +WGLL+V STP ILAVQLPQI+KN QKHTGELA+LTV LA GSS+R TT+ADLGGDPWLLFNY+LG +N +L QI YR+ TA+VRR V+ + +A +A
Sbjct: 1 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGXXXXXXXXALVTKSIKKVKPAGGGPLGRTAIAVGSVAASVLCVLYLPERLWGLLVVVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIADLGGDPWLLFNYILGATSNATILAQIYLYRALTAKVRRDVKAKADKATHAA 253
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A836CGJ2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA) HSP 1 Score: 139 bits (351), Expect = 4.070e-35 Identity = 92/223 (41.26%), Postives = 124/223 (55.61%), Query Frame = 2
Query: 272 RVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTM-QYLPPSMWG-LLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRT 934
++AG GII GS+ +K PQI R+ ARS+ GL+ + Y +V L + V+YH K P AYGE+ +LVQ +I+VALMWR+ + K R + +AT VAL + Y P W LL++SSTP IL V +PQI N Q HTG+++ +TV L L GS+IR TTL ++G D LL NY LG V NG+L+ Q R T
Sbjct: 51 KLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPM----------------KHR----------AMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDAT 247
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A485KEC0_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEC0_9STRA) HSP 1 Score: 130 bits (328), Expect = 7.040e-32 Identity = 85/223 (38.12%), Postives = 124/223 (55.61%), Query Frame = 2
Query: 272 RVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALT--MQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRT 934
+V GY II GS LK PQI ++ A ++AGL P+S Y +V F SV+Y+V++ PI +GES+ IL+Q +I+VA++W + K PA +T +LG AT VAL M +LP +L SS P + ++PQI+ N Q HTG+LA +T+FL GS+ R +TTL + G D +L +L+ ++ NG L+ QI Y T
Sbjct: 42 KVLGYLIILGSFILKVPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVIRGYPISTWGESLTILIQNIILVAMLWVY---------------------SKAPA-------STQLLGVATFVALGAGMLHLPSEFDWVLPASSIPLSVMARIPQIFSNFKQGHTGQLAFITLFLNFGGSAARLFTTLQETG-DQVVLLGFLISMLLNGTLIAQILIYWKAT 235
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A7S2BZY0_9STRA (Solute carrier family 66 member 3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZY0_9STRA) HSP 1 Score: 119 bits (298), Expect = 6.100e-28 Identity = 72/226 (31.86%), Postives = 123/226 (54.42%), Query Frame = 2
Query: 266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEV 943
+ ++ GYGI+A + LK PQI +V +A++ GL+ +LY DVFL+ + MY++ NP+ A+GE +I++VQ + +V L+WR+ + + +G VL A VA+++ LPP LL + P ++ ++ QI KN+ HTG L+ ++ + + +R +TT+ +G D +L Y L V +NG+LL QI Y + T++V
Sbjct: 3 IAKILGYGILASNTTLKVPQIRKVVQAKATTGLSAMALYLDVFLYLNAAMYNITMGNPLSAWGELLIVIVQNVALVLLLWRYSLPAPSLAAKAG-----------------------AVLMLAAHVAISLN-LPPGYRYLLPTLNLPCMIITRIAQIRKNMANGHTGLLSTTSLVMNISTVLVRVFTTVVLVGWDWNILRAYGLSVTSNGVLLGQIAYYGANTSKV 204
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A7S0AK72_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AK72_9STRA) HSP 1 Score: 109 bits (272), Expect = 8.490e-24 Identity = 64/226 (28.32%), Postives = 114/226 (50.44%), Query Frame = 2
Query: 266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGS-ATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAE 940
+V+ G GII G+ K P V + +S+AGL+ ++Y + ++ S Y +L+ NP AYGE++++ +QT+IMV +W++ V + + + G+ AT + + L P + LL+ S+ P ++ + Q+ + KHTG +++T + LLGS+IR TT+ ++G D LL Y+L N +L+ Q Y+ T +
Sbjct: 46 IVKGLGIGIILGACLNKAPLFINVLKTKSVAGLSTGAIYGEAIMYCNSAFYGILRANPFTAYGENLVVALQTVIMVTFIWKYREPIV------------------------TMPQRLLAAGAFATYCFVVFKVLTPEQYPLLVTSNLPVLVYSRGSQVIETFSLKHTGTNSIITTGMNLLGSAIRIVTTIQEIGWDMALLRGYMLSAFLNVVLVLQFFIYKDNTTK 247
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A6S9F6Q6_9STRA (Solute carrier family 66 member 3 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9F6Q6_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.100e-23 Identity = 67/229 (29.26%), Postives = 121/229 (52.84%), Query Frame = 2
Query: 272 RVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAEVRRAVE 958
+V G GII G+ +K P + + + +S+AGL+ + Y +V ++ S Y +L+ NP AYGE+ + +Q++++ ++W+F D ++K A TTI G V + LP + L+ ++ PA++ + QI +HTG +V+T+ + LLGS IR +TT+ ++G D LL YLL +V N +L++Q ++ T E ++++
Sbjct: 48 KVLGIGIILGACLVKLPILLNILKNKSVAGLSAGATYGEVIMYWNSAFYGILRGNPFTAYGENFAVAIQSLVITLMLWQFQKDPA------------FTMQQKATA-------TTIFAGY---VIFVLNALPEEYYYTLVAANWPALMYSRGSQIIDFARLRHTGTNSVITMSMNLLGSLIRVFTTIKEVGWDLPLLSGYLLSIVLNVVLVSQYFLFKENTEEFLKSLK 254
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A4E0RPL3_FASHE (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0RPL3_FASHE) HSP 1 Score: 101 bits (251), Expect = 4.820e-21 Identity = 71/226 (31.42%), Postives = 116/226 (51.33%), Query Frame = 2
Query: 245 TMNVQLGLVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAY 922
T+ +LGL ++ GYG++ GS +K PQI ++ +A+S AGL+ SL ++ F +S Y V KR P +YGES+ + QT ++ + + V V GL+ V + TA+ L+ P S L + P +++ +L QIY N + TG+L+ +TV L LGS+ R +T++ + G D ++ +LL + N ILL Q+ Y
Sbjct: 28 TVCFKLGLSKLLGYGVVLGSSLVKVPQIIKILKAKSGAGLSVPSLLLELLTFTSSFAYSVAKRFPFSSYGESIFLAFQTFLITWMTIGWEVSQVA----------------------GLV--FAAVFAAFTAITLSPAT-PISALYTLQTLNVPIVVSAKLLQIYANWYNGSTGQLSAITVVLFALGSTARIFTSIQETG-DSLIIVTFLLSTLCNYILLAQVVYY 227
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: UPI0011D01DDC (LOW QUALITY PROTEIN: mannose-P-dolichol utilization defect 1 protein n=1 Tax=Strigops habroptila TaxID=2489341 RepID=UPI0011D01DDC) HSP 1 Score: 98.6 bits (244), Expect = 6.410e-20 Identity = 76/223 (34.08%), Postives = 110/223 (49.33%), Query Frame = 2
Query: 266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRT 934
L +V GYGI+AGSV +K PQ+ RV ARS AGL+ + ++ A SV Y + P A+GE++ +L+QTM + LM FG G +G V L+ ++LG AL PP + L ++ P I+ +L Q N Q HTG+L+ +T L G+ R +T+L + G DP L + NG+LL Q+ YR T
Sbjct: 52 LSKVLGYGIVAGSVMVKLPQVLRVLGARSGAGLSVPGVLLELLALAGSVAYGCSRAFPFSAWGEALFLLLQTMTLGFLMQHFG-----------GHTGRGVL---------LVAGYWVLLG-----ALLSPTPPPGLITFLQAANLPIIILSRLLQAATNYRQGHTGQLSGVTTTLLFGGALARVFTSLQETG-DPLLALTFATSAACNGLLLGQLLYYRGGT 248
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Match: A0A1Z5KGW1_FISSO (Mannose-P-dolichol utilization defect 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGW1_FISSO) HSP 1 Score: 98.6 bits (244), Expect = 9.880e-20 Identity = 68/232 (29.31%), Postives = 114/232 (49.14%), Query Frame = 2
Query: 266 LVRVAGYGIIAGSVCLKTPQIARVWRARSLAGLAPASLYADVFLFATSVMYHVLKRNPIRAYGESVIILVQTMIMVALMWRFGVDDVGIGKASGGKSGGEVARKKRPAGGGLLGRTTIVLGSATAVALTMQYLPPSMWGLLIVSSTPAILAVQLPQIYKNLWQKHTGELAVLTVFLALLGSSIRTWTTLADLGGDPWLLFNYLLGVVTNGILLTQIRAYRSRTAE-VRRAVE 958
+ ++ G IIAG+ K P I + S GL+ S+YADV ++A Y L+ +P+ AYGE+ +++Q+ +++ L+W+F + + + +V G A V ++ +LP LLI S P ++ + Q+Y KHTG +++T + L GS IR TTL ++G D +L + + VV NG+ L Q Y T + V+R+ E
Sbjct: 45 VAKLLGVAIIAGAFLNKAPVIVNLIDTESTEGLSRGSVYADVLVYANGFAYGFLEGHPVTAYGENAALVLQSFVILLLVWKF-TPVISLAEKF----------------------LVVVAGLAYVVGVSW-FLPAWQHYLLIASQWPIMMYARGSQLYATYQVKHTGAQSIITTLMNLAGSLIRIMTTLKEVGWDLPVLTGFGIAVVLNGLTLLQFMVYWENTRQFVKRSSE 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig499.12210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig499.12210.1 >prot_H-elongata_contig499.12210.1 ID=prot_H-elongata_contig499.12210.1|Name=mRNA_H-elongata_contig499.12210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp MASAMERVRWMLVVFALGLANISRIDALIVPGALFPAPFHAPLSTHVSRIback to top mRNA from alignment at H-elongata_contig499:9334..13012- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig499.12210.1 ID=mRNA_H-elongata_contig499.12210.1|Name=mRNA_H-elongata_contig499.12210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3679bp|location=Sequence derived from alignment at H-elongata_contig499:9334..13012- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig499:9334..13012- >mRNA_H-elongata_contig499.12210.1 ID=mRNA_H-elongata_contig499.12210.1|Name=mRNA_H-elongata_contig499.12210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig499:9334..13012- (Himanthalia elongata Himel1 dioecious)back to top |