mRNA_H-elongata_contig49865.12206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49865.12206.1
Unique NamemRNA_H-elongata_contig49865.12206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: D7G418_ECTSI (Ribonucleoside-diphosphate reductase small chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G418_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 1.510e-156
Identity = 217/246 (88.21%), Postives = 233/246 (94.72%), Query Frame = 1 
Query:   25 KDGDTGANFVEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGSNATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFICG 762
            K+   G  FVEP+CR+DPSRFVLFPIKHPELW MYK+AKASFWTVEEVDLSQD+RDW+ALTGNE+HFIS VLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDK ERD+LFNA+N+IPCVK KADWAMRWIGS+ATFAERLVAFAAVEG+FFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFAC+LF  LE+KPSRE V+ IV+EAVEVEKSFICG
Sbjct:  171 KEAARGVPFVEPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWEALTGNEQHFISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKQERDNLFNAYNDIPCVKQKADWAMRWIGSDATFAERLVAFAAVEGVFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLFASLENKPSRETVMAIVREAVEVEKSFICG 416
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: A0A835YXN6_9STRA (Ferritin-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN6_9STRA)

HSP 1 Score: 387 bits (995), Expect = 1.900e-132
Identity = 186/239 (77.82%), Postives = 206/239 (86.19%), Query Frame = 1 
Query:   43 ANFVEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGSNATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFIC 759
            A +VEP+CR D SRFVLFPIKHP+LW MYK+A+ASFWT EEVDL  DA DW+ L+  EKHFIS VLAFFA+SDGIVMENLV RF  EVQ PEARCFYGFQIAMESIHQEMYA LLD YIKD++E+D LFNA   I C+K KADWA RWIGS A+FAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNE+ISRDEGLHCDFACEL+R+LE   SR ++L I+ EAV+VEK FIC
Sbjct:   49 AEWVEPLCRPDRSRFVLFPIKHPKLWDMYKKAEASFWTAEEVDLGADAADWEKLSRQEKHFISMVLAFFASSDGIVMENLVHRFCAEVQAPEARCFYGFQIAMESIHQEMYAALLDAYIKDRNEKDTLFNAHLKIHCIKRKADWAERWIGSTASFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACELYRMLERPLSRARILHIITEAVDVEKDFIC 287
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: A0A7S2WPD1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPD1_9STRA)

HSP 1 Score: 385 bits (990), Expect = 1.270e-130
Identity = 174/241 (72.20%), Postives = 210/241 (87.14%), Query Frame = 1 
Query:   37 TGANFVEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGSNATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFIC 759
            T   FVEP+CR D SRF LFP++HP LW MYKQ +ASFWT EEVD+S D RDW++L+ +E+HF+  VLAFFA+SDG+VMENL  RF +EVQLPEARCFYGFQIAME++HQEMY+LLLDTYI+D  ER  LF+A+ ++P VKAKADWA+RWIGS+A+FA+RLVAFAAVEGIFFSGSFCAI+WLKKRGLMPGLTFSNE+ISRDEGLHCDFACE++R+++H+  RE +  I+ EAVEVEK FIC
Sbjct:  118 TSEPFVEPICREDASRFALFPVRHPSLWNMYKQHEASFWTAEEVDVSGDRRDWESLSESEQHFVKMVLAFFASSDGVVMENLAHRFCREVQLPEARCFYGFQIAMEAVHQEMYSLLLDTYIRDPDERAQLFHAYQHVPAVKAKADWALRWIGSDASFAKRLVAFAAVEGIFFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHCDFACEMYRMIQHRLDRESITQIITEAVEVEKGFIC 358
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: UPI001D085298 (ribonucleoside-diphosphate reductase subunit M2 B n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D085298)

HSP 1 Score: 370 bits (949), Expect = 2.930e-125
Identity = 172/236 (72.88%), Postives = 206/236 (87.29%), Query Frame = 1 
Query:   52 VEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGS-NATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFI 756
            +EP+ R +P RFV+FPI++P++W MYK+A+ASFWTVEEVDLS+D +DWD+L   E+HFIS VLAFFAASDGIV ENLVERFSQEVQLPEARCFYGFQIAME++H EMY+LL+DTYI+D H+RD LFNA   +PCVK KADWA+ WI S NATF ER+VAFAAVEGIFFSGSF AIFWLKKRGLMPGLTFSNE+ISRDEGLHCDFAC +F+ L  KPS+ +V +I+K+AV +E+ F+
Sbjct:   70 LEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWDSLKDGERHFISHVLAFFAASDGIVNENLVERFSQEVQLPEARCFYGFQIAMENVHSEMYSLLIDTYIRDPHQRDFLFNAIETLPCVKQKADWALNWISSKNATFGERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYLVQKPSKARVTEIIKDAVVIEQEFL 305
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: W5J0Z2_ANODA (Ribonucleoside-diphosphate reductase small chain n=5 Tax=Nyssorhynchus TaxID=44543 RepID=W5J0Z2_ANODA)

HSP 1 Score: 360 bits (923), Expect = 3.710e-121
Identity = 168/236 (71.19%), Postives = 203/236 (86.02%), Query Frame = 1 
Query:   52 VEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGSN-ATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFI 756
            +EP+   +P RFV+FPI++P++W MYK+A+ASFWTVEEVDLS+D +DWD+L  +E+HFIS VLAFFAASDGIV ENLVERFSQEVQ+ EARCFYGFQIAME++H EMY+LL+DTYI+D  ERD LFNA   +PCVK KADWAM WI S  A + ER+VAFAAVEGIFFSGSF AIFWLKKRGLMPGLTFSNE+ISRDEGLHCDFAC +F+ L  KPSR++V DI+++AV +E+ F+
Sbjct:   81 IEPLLMDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWDSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKERDFLFNAIETLPCVKRKADWAMNWISSKKANYGERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYLVQKPSRKRVTDIIRDAVMIEQEFL 316
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: A0A401S0J3_CHIPU (Uncharacterized protein n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401S0J3_CHIPU)

HSP 1 Score: 359 bits (921), Expect = 5.200e-121
Identity = 168/235 (71.49%), Postives = 202/235 (85.96%), Query Frame = 1 
Query:   55 EPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGSN-ATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFI 756
            EP+ + +P RFV+FPI++ ++W MYK+A+ASFWT EEVDLS+D + WD+L   EKHFIS VLAFFAASDGIV ENLVERFSQEVQ+ EARCFYGFQIAME+IH EMY+LL+DTYIKD  ER++LFNA   +PCVK KADWA+RWIG   ATF ER+VAFAAVEGIFFSGSF AIFWLKKRGLMPGLTFSNE+ISRDEGLHCDFAC +F+ L HKPS E+V  ++++AV++E+ F+
Sbjct:   71 EPLLKENPRRFVIFPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWDSLKSEEKHFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETLPCVKKKADWALRWIGDRQATFGERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVRSVIQDAVQIEQEFL 305
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: A0A182Y867_ANOST (Uncharacterized protein n=7 Tax=Cellia TaxID=44534 RepID=A0A182Y867_ANOST)

HSP 1 Score: 357 bits (916), Expect = 2.440e-120
Identity = 165/236 (69.92%), Postives = 204/236 (86.44%), Query Frame = 1 
Query:   52 VEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGSN-ATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFI 756
            +EP+ R +P RFV+FPI++P++W MYK+A+ASFWTVEEVDLS+D +DWD+L  +E+HFIS VLAFFAASDGIV ENLVERFSQEVQ+ EARCFYGFQIAME++H EMY+LL+DTYI+D  +R+ LFNA   +PCVK KADWA+ WI S  A F ER+VAFAAVEGIFFSGSF +IFWLKKRGLMPGLTFSNE+ISRDEGLHCDFAC +F+ L  KPS+E+V +I+++AV +E+ F+
Sbjct:   64 IEPLLRDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWDSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKQREFLFNAIETLPCVKKKADWALNWISSKKANFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYLVQKPSKERVTEIIRDAVVIEQEFL 299
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: UPI00158D4C80 (ribonucleoside-diphosphate reductase subunit M2 B n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158D4C80)

HSP 1 Score: 357 bits (917), Expect = 2.560e-120
Identity = 170/236 (72.03%), Postives = 203/236 (86.02%), Query Frame = 1 
Query:   52 VEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIG-SNATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFI 756
            VEP+ + +P RFVLFPI+ P++W MYK+A+ASFWTVEEVDLS+D  DW  LT +EKHFIS VLAFFAASDGIV ENLVERFSQEVQ+ EARCFYGFQIAME++H EMY+LL+DTYI+D  +RD+LFNA  N+PCV  KA WA+ WI   +ATFAER+VAFAAVEGIFFSGSF AIFWLKKRGLMPGLTFSNE+ISRDEGLHCDFAC LF  L  KPS+E+V+ I+++AV++E+ F+
Sbjct:   76 VEPLLKENPRRFVLFPIQWPDIWKMYKKAEASFWTVEEVDLSKDMDDWAKLTKDEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKQRDYLFNAIENLPCVAKKAKWALNWISHKSATFAERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLVQKPSKERVISIIRDAVQIEQEFL 311
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BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: A0A674CC04_SALTR (Ribonucleoside-diphosphate reductase subunit M2-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674CC04_SALTR)

HSP 1 Score: 356 bits (914), Expect = 3.650e-120
Identity = 168/238 (70.59%), Postives = 202/238 (84.87%), Query Frame = 1 
Query:   46 NFVEPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGS-NATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFI 756
            N  EP+ + +P RFV+FPIK+ ++W MYK+A+ASFWT EEVDLS+D + WD+L   E++FIS VLAFFAASDGIV ENLVERF+QEVQ+ EARCFYGFQIAME+IH EMY+LL+DTYIKD  ERD+LFNA   +PCVK KADWA+ WIG+ NA F ER+VAFAAVEGIFFSGSF AIFWLKKRGLMPGLTFSNE+ISRDEGLHCDFAC +F+ L HKPS+E V  +++ AVE+E+ F+
Sbjct:   53 NTEEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERDYLFNAIETLPCVKRKADWALNWIGNKNAGFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSKETVTKLIRNAVEIEQEFL 290
[Close]
BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Match: A0A2H1W8N5_SPOFR (SFRICE_000148 n=7 Tax=Noctuidae TaxID=7100 RepID=A0A2H1W8N5_SPOFR)

HSP 1 Score: 356 bits (914), Expect = 3.770e-120
Identity = 166/235 (70.64%), Postives = 204/235 (86.81%), Query Frame = 1 
Query:   55 EPVCRSDPSRFVLFPIKHPELWGMYKQAKASFWTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIPCVKAKADWAMRWIGS-NATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKSFI 756
            EP+ R +P RFV+FPI++P++W MYK+A+ASFWTVEEVDLS+D  DW+ L  +E+HFI  VLAFFAASDGIV ENLVERFSQEVQ+ EARCFYGFQIAME++H EMY+LL+DTYI+D  ERD LFNA   +PCVK KADWA++WIGS +ATFAER++AFAAVEGIFFSGSF +IFW+KKRGLMPGLTFSNE+ISRDEGLH DFAC ++R +  KPS+E+VL I+K+AV +E+ F+
Sbjct:   57 EPLLRDNPRRFVIFPIQYPDIWEMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKERDFLFNAIETLPCVKKKADWALQWIGSKSATFAERIIAFAAVEGIFFSGSFASIFWMKKRGLMPGLTFSNELISRDEGLHTDFACLMYRHVVQKPSKERVLQIIKDAVVIEQEFL 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49865.12206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G418_ECTSI1.510e-15688.21Ribonucleoside-diphosphate reductase small chain n... [more]
A0A835YXN6_9STRA1.900e-13277.82Ferritin-like superfamily n=1 Tax=Tribonema minus ... [more]
A0A7S2WPD1_9STRA1.270e-13072.20Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
UPI001D0852982.930e-12572.88ribonucleoside-diphosphate reductase subunit M2 B ... [more]
W5J0Z2_ANODA3.710e-12171.19Ribonucleoside-diphosphate reductase small chain n... [more]
A0A401S0J3_CHIPU5.200e-12171.49Uncharacterized protein n=6 Tax=Galeoidea TaxID=11... [more]
A0A182Y867_ANOST2.440e-12069.92Uncharacterized protein n=7 Tax=Cellia TaxID=44534... [more]
UPI00158D4C802.560e-12072.03ribonucleoside-diphosphate reductase subunit M2 B ... [more]
A0A674CC04_SALTR3.650e-12070.59Ribonucleoside-diphosphate reductase subunit M2-li... [more]
A0A2H1W8N5_SPOFR3.770e-12070.64SFRICE_000148 n=7 Tax=Noctuidae TaxID=7100 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49865contigH-elongata_contig49865:1896..4043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.4
Seed ortholog evalue2.2e-126
Seed eggNOG ortholog2880.D7G418
Preferred nameRNR2
KEGG rclassRC00613,RC01003
KEGG koko:K10808
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,ko04115,map00230,map00240,map00480,map00983,map01100,map04115
KEGG ModuleM00053
GOsGO:0003674,GO:0003824,GO:0004748,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009215,GO:0009216,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0032991,GO:0034641,GO:0034654,GO:0042278,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0051063,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072521,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
EggNOG free text desc.ribonucleoside-diphosphate reductase activity
EggNOG OGsCOG1678@1,KOG1567@2759
EC1.17.4.1
COG Functional cat.K
BiGG ReactioniMM904.YGR180C,iMM904.YJL026W,iND750.YGR180C,iND750.YJL026W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonucleotide reductase
Ec32 orthologEc-19_000440.1
Exons6
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49865.12206.1prot_H-elongata_contig49865.12206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49865 1896..4043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.4086788-CDS-H-elongata_contig49865:1895..20751622930821.4086788-CDS-H-elongata_contig49865:1895..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 1896..2075 +
1691679584.8347695-CDS-H-elongata_contig49865:1895..20751691679584.8347695-CDS-H-elongata_contig49865:1895..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 1896..2075 +
1622930821.422133-CDS-H-elongata_contig49865:2448..25501622930821.422133-CDS-H-elongata_contig49865:2448..2550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 2449..2550 +
1691679584.8486695-CDS-H-elongata_contig49865:2448..25501691679584.8486695-CDS-H-elongata_contig49865:2448..2550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 2449..2550 +
1622930821.4346359-CDS-H-elongata_contig49865:2769..28581622930821.4346359-CDS-H-elongata_contig49865:2769..2858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 2770..2858 +
1691679584.8576756-CDS-H-elongata_contig49865:2769..28581691679584.8576756-CDS-H-elongata_contig49865:2769..2858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 2770..2858 +
1622930821.4493797-CDS-H-elongata_contig49865:3017..31121622930821.4493797-CDS-H-elongata_contig49865:3017..3112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 3018..3112 +
1691679584.8700764-CDS-H-elongata_contig49865:3017..31121691679584.8700764-CDS-H-elongata_contig49865:3017..3112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 3018..3112 +
1622930821.463744-CDS-H-elongata_contig49865:3336..34101622930821.463744-CDS-H-elongata_contig49865:3336..3410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 3337..3410 +
1691679584.8792279-CDS-H-elongata_contig49865:3336..34101691679584.8792279-CDS-H-elongata_contig49865:3336..3410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 3337..3410 +
1622930821.4769335-CDS-H-elongata_contig49865:3821..40431622930821.4769335-CDS-H-elongata_contig49865:3821..4043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 3822..4043 +
1691679584.8884423-CDS-H-elongata_contig49865:3821..40431691679584.8884423-CDS-H-elongata_contig49865:3821..4043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49865 3822..4043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49865.12206.1

>prot_H-elongata_contig49865.12206.1 ID=prot_H-elongata_contig49865.12206.1|Name=mRNA_H-elongata_contig49865.12206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
VGSAVDPVKDGDTGANFVEPVCRSDPSRFVLFPIKHPELWGMYKQAKASF
WTVEEVDLSQDARDWDALTGNEKHFISTVLAFFAASDGIVMENLVERFSQ
EVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKHERDHLFNAFNNIP
CVKAKADWAMRWIGSNATFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLM
PGLTFSNEMISRDEGLHCDFACELFRLLEHKPSREKVLDIVKEAVEVEKS
FICG
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mRNA from alignment at H-elongata_contig49865:1896..4043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49865.12206.1 ID=mRNA_H-elongata_contig49865.12206.1|Name=mRNA_H-elongata_contig49865.12206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2148bp|location=Sequence derived from alignment at H-elongata_contig49865:1896..4043+ (Himanthalia elongata Himel1 dioecious)
GTGGGATCCGCTGTCGACCCAGTCAAGGACGGAGATACCGGAGCGAACTT
TGTGGAACCCGTCTGTCGGTCAGACCCGTCGAGGTTCGTTTTGTTCCCAA
TCAAGCACCCGGAGCTGTGGGGTATGTACAAGCAGGCCAAGGCTAGCTTT
TGGACAGTCGAGGAGGTTGACCTCAGCCAGGTACGAAAAAGGTTCCGCCT
AGAGACGCGCGGGGGCTTGCAGGGTTCGAACCTAGCTACGGTTTTCAGGT
TGGGTGTTTGAGAACATTCAACAGGCTGCAACACCGTGCAAAGTTCCACG
GGCGTGTTTCTCATCTGGCCGTGGTGGTCTGTATACTGGGTGGCTCTTGT
TATTGCAACCACGCGTACGGGTAGCGATTCCGCTCACGTCGGTGAACGCC
TCCGGCGTTGAAAACCTATGACATTGAGAACGACCCTGAGACGCTAAGCC
TTACGCGAAAAAAACAAATGGGTGCGATCTATCTTTCATCATCGACACTG
CTAAGCTCGTTCGAACCCTACCATTTGATTTGTGCGTTTGTCGACGCAAA
CAGGATGCTCGAGACTGGGACGCCCTAACCGGCAACGAGAAGCACTTCAT
CAGCACGGTGCTGGCCTTCTTCGCGGCAAGCGACGGCATCGTCATGGAGA
ATCTCGTGAGCGATTGCACCGAGGGGATTCGTTATATTTCCGCGAAAGCT
CCCAGCAACCACGACCAGAGCTCCAACTAGCCGCGAGCGACGCGATTCGA
CAGATGGGCCTGCTGTGCCCAAAATCGTGTATATATTGTGCACTGTTCCC
ATCTCTCGAGTGATGTAGCTTTTTGTTAAATTTTGGGACCTTTTGAGAAC
GTTTTCACGGTGCATCATGACTAGGTAGAGCGATTCAGCCAAGAAGTGCA
GCTGCCAGAGGCGCGATGTTTCTACGGGTTCCAGATCGCTATGGAGTCCA
TCCACCAGGAGATGTGAGTCATGTCTTCGCGACGCCCTCAGCGCTTAGTA
CTAGAGTGATGTGTCTTGTCTTGCGATGAATCACCCGTGTCGCCGGGACA
TGTTAACCCCAAGGATGCCGTCGCGACGCCCTTCGTCTGGATTGCGGTCC
TCCTAAAAACGAAACGCGTCAGGTATGCCCTGCTCCTGGACACGTACATC
AAGGACAAACATGAAAGAGATCACCTGTTCAACGCATTCAACAACATTCC
CTGCGTTAAGGCGAAAGGTGGGTGGATGGATCAGATCCGAGGACCGAGCC
AGCCGAAGAATGCCCGCCGTACTGCGCTGTCTTCTTAACTGTTTCAAACA
AAACAAATAACCCGTCGGCCGGCCTCCTCCTCCTCGAACCCTTTCCTGCG
TCTTGGGGCTCGACGTGTCTCTCCTCGATATCTCTCCATCGCTCCATGGC
GGGTTGACTCGCTCTGGCGGGGGCGTGAACCTCCCCCTCAGCTGACTGGG
CAATGAGGTGGATCGGAAGCAACGCGACCTTCGCCGAGAGGCTCGTCGCT
TTTGCGGCGGTAGAGGTGAGCGGGCAAGGCGACTCTACCTTTGCTTGAGT
CTTTATCGCGCAGGAGCCTGTCTTCAACACGGGTGACGGGTAGTCTCTCC
TGGCTGTACCGATCGAATACACCTGGAAGTAGGCGGTCGCTTGCGCGCGC
GTCAGTCCTACACTGTTTCTGCCTACTACACAGTCCCCGACTCGTGTGGG
ACAGTCATCCCCGGGGTTTCGATATTAGAGGATGTTTTCCCCGCTGGGGC
AGGGAAGGGCCGAAGCCGTGTCGGTCGCTTGTTGCGATCCGATCGTTTGG
GGGATGCCGTTTGGCGCTGTATGTCATTGTGTACCGCGCTTCTTTCTACC
CGCGGAACATCATCATATTGATATTTGTGTAATAATAGTGTACTTTATAT
GCCCCCTCTCTCTCTCTATTTGACAGGGAATCTTCTTTTCGGGAAGTTTT
TGCGCTATTTTCTGGCTCAAAAAACGCGGTCTGATGCCCGGGCTGACCTT
CAGCAACGAAATGATAAGTCGGGACGAGGGACTGCACTGCGACTTTGCGT
GCGAATTGTTCCGGCTGCTGGAGCACAAACCCAGCAGAGAGAAGGTGCTG
GACATCGTCAAGGAGGCCGTGGAGGTTGAAAAGAGCTTCATCTGTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig49865:1896..4043+

>mRNA_H-elongata_contig49865.12206.1 ID=mRNA_H-elongata_contig49865.12206.1|Name=mRNA_H-elongata_contig49865.12206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig49865:1896..4043+ (Himanthalia elongata Himel1 dioecious)
GTGGGATCCGCTGTCGACCCAGTCAAGGACGGAGATACCGGAGCGAACTT
TGTGGAACCCGTCTGTCGGTCAGACCCGTCGAGGTTCGTTTTGTTCCCAA
TCAAGCACCCGGAGCTGTGGGGTATGTACAAGCAGGCCAAGGCTAGCTTT
TGGACAGTCGAGGAGGTTGACCTCAGCCAGGTGGGATCCGCTGTCGACCC
AGTCAAGGACGGAGATACCGGAGCGAACTTTGTGGAACCCGTCTGTCGGT
CAGACCCGTCGAGGTTCGTTTTGTTCCCAATCAAGCACCCGGAGCTGTGG
GGTATGTACAAGCAGGCCAAGGCTAGCTTTTGGACAGTCGAGGAGGTTGA
CCTCAGCCAGGATGCTCGAGACTGGGACGCCCTAACCGGCAACGAGAAGC
ACTTCATCAGCACGGTGCTGGCCTTCTTCGCGGCAAGCGACGGCATCGTC
ATGGAGAATCTCGATGCTCGAGACTGGGACGCCCTAACCGGCAACGAGAA
GCACTTCATCAGCACGGTGCTGGCCTTCTTCGCGGCAAGCGACGGCATCG
TCATGGAGAATCTCGTAGAGCGATTCAGCCAAGAAGTGCAGCTGCCAGAG
GCGCGATGTTTCTACGGGTTCCAGATCGCTATGGAGTCCATCCACCAGGA
GATGTAGAGCGATTCAGCCAAGAAGTGCAGCTGCCAGAGGCGCGATGTTT
CTACGGGTTCCAGATCGCTATGGAGTCCATCCACCAGGAGATGTATGCCC
TGCTCCTGGACACGTACATCAAGGACAAACATGAAAGAGATCACCTGTTC
AACGCATTCAACAACATTCCCTGCGTTAAGGCGAAAGGTATGCCCTGCTC
CTGGACACGTACATCAAGGACAAACATGAAAGAGATCACCTGTTCAACGC
ATTCAACAACATTCCCTGCGTTAAGGCGAAAGCTGACTGGGCAATGAGGT
GGATCGGAAGCAACGCGACCTTCGCCGAGAGGCTCGTCGCTTTTGCGGCG
GTAGAGCTGACTGGGCAATGAGGTGGATCGGAAGCAACGCGACCTTCGCC
GAGAGGCTCGTCGCTTTTGCGGCGGTAGAGGGAATCTTCTTTTCGGGAAG
TTTTTGCGCTATTTTCTGGCTCAAAAAACGCGGTCTGATGCCCGGGCTGA
CCTTCAGCAACGAAATGATAAGTCGGGACGAGGGACTGCACTGCGACTTT
GCGTGCGAATTGTTCCGGCTGCTGGAGCACAAACCCAGCAGAGAGAAGGT
GCTGGACATCGTCAAGGAGGCCGTGGAGGTTGAAAAGAGCTTCATCTGTG
GGGGAATCTTCTTTTCGGGAAGTTTTTGCGCTATTTTCTGGCTCAAAAAA
CGCGGTCTGATGCCCGGGCTGACCTTCAGCAACGAAATGATAAGTCGGGA
CGAGGGACTGCACTGCGACTTTGCGTGCGAATTGTTCCGGCTGCTGGAGC
ACAAACCCAGCAGAGAGAAGGTGCTGGACATCGTCAAGGAGGCCGTGGAG
GTTGAAAAGAGCTTCATCTGTGGG
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