mRNA_H-elongata_contig49801.12199.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5JY30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY30_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.080e-20 Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1
Query: 79 VENSLVHTAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
+ S T G V PL+F ALNFYH+RDGKP QDYPWL+D+K+IEP+R+TT+SV++PRD
Sbjct: 43 IVTSSAETTGTVEEVAPLSFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTMSVSSPRD 103
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.040e-19 Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 1
Query: 100 TAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
T+G A V PLAF ALNFYH+RDGKP QDYPWL+D+K+IEP+R+TTL+V++PRD
Sbjct: 117 TSGPAEEVAPLAFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTLTVSSPRD 170
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 7.090e-19 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 94 VHTAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
V A G V PL+F ALNFYH+RDGKP QDYPWLK +K+IEP+R+TTLSV++PRD
Sbjct: 109 VEAAAGVGEVAPLSFQALNFYHIRDGKPAQDYPWLKGVKLIEPHRETTLSVSSPRD 164
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.800e-18 Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1
Query: 103 AGGATAV----QPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
AGGA++ Q LAFTALNFYHVRDGKPGQDYPWLKD K++EP+R+TTL+V PR+
Sbjct: 99 AGGASSSGESDQALAFTALNFYHVRDGKPGQDYPWLKDFKLVEPHRETTLAVEAPRE 155
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 6.260e-18 Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1
Query: 127 PLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
PL+FTALNFYHVRDGKP QDYPWLKD+K+IEP+R+TTL V PRD
Sbjct: 132 PLSFTALNFYHVRDGKPAQDYPWLKDVKLIEPHRETTLDVETPRD 176
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.630e-16 Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 1
Query: 106 GGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
G AT + PL+F A NFYH+RDGKP DYPWLK++K+IEP+R+TT +V++PRD
Sbjct: 121 GVATELAPLSFEATNFYHIRDGKPALDYPWLKEVKLIEPHRETTFTVSSPRD 172
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.630e-16 Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 97 HTAGGAT-AVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
H G AT A PLAF A NFYHVRDGKP DYPWL+D+K++EP+R+TTLSV +PR+
Sbjct: 94 HRPGLATTAPPPLAFHARNFYHVRDGKPASDYPWLRDVKLVEPHRETTLSVDDPRE 149
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 4.870e-16 Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1
Query: 121 VQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
V PL+F ALNFYH+RDGKP QDY WL+D+K+IEP+R+TTL V++PRD
Sbjct: 90 VAPLSFEALNFYHIRDGKPAQDYTWLRDVKLIEPHRETTLLVSSPRD 136
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 5.250e-14 Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = 1
Query: 130 LAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
L+F A NFY +RDGKP QDYPWLKD+K+IEP+R+TT +V++PRD
Sbjct: 166 LSFEATNFYQLRDGKPAQDYPWLKDVKLIEPHRETTFTVSSPRD 209
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5KGP3_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP3_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 2.080e-9 Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 40 GRSGKFVEVGTDAVENSLVHTAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTN 252
GR+ +FVE A +L G Q AFTALNF HVRDGKPGQDYP+ K++EP R+TTL+ ++
Sbjct: 94 GRTARFVEEHAAAGGGALSSGESG----QAQAFTALNFCHVRDGKPGQDYPF----KLVEPRRETTLAASS 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49801.12199.1 >prot_H-elongata_contig49801.12199.1 ID=prot_H-elongata_contig49801.12199.1|Name=mRNA_H-elongata_contig49801.12199.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp TSIGRDYHAATGPGRSGKFVEVGTDAVENSLVHTAGGATAVQPLAFTALNback to top mRNA from alignment at H-elongata_contig49801:3247..3509+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49801.12199.1 ID=mRNA_H-elongata_contig49801.12199.1|Name=mRNA_H-elongata_contig49801.12199.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=263bp|location=Sequence derived from alignment at H-elongata_contig49801:3247..3509+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49801:3247..3509+ >mRNA_H-elongata_contig49801.12199.1 ID=mRNA_H-elongata_contig49801.12199.1|Name=mRNA_H-elongata_contig49801.12199.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig49801:3247..3509+ (Himanthalia elongata Himel1 dioecious)back to top |