mRNA_H-elongata_contig49801.12199.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49801.12199.1
Unique NamemRNA_H-elongata_contig49801.12199.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5JY30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY30_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.080e-20
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   79 VENSLVHTAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            +  S   T G    V PL+F ALNFYH+RDGKP QDYPWL+D+K+IEP+R+TT+SV++PRD
Sbjct:   43 IVTSSAETTGTVEEVAPLSFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTMSVSSPRD 103          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.040e-19
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 1
Query:  100 TAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            T+G A  V PLAF ALNFYH+RDGKP QDYPWL+D+K+IEP+R+TTL+V++PRD
Sbjct:  117 TSGPAEEVAPLAFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTLTVSSPRD 170          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.090e-19
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   94 VHTAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            V  A G   V PL+F ALNFYH+RDGKP QDYPWLK +K+IEP+R+TTLSV++PRD
Sbjct:  109 VEAAAGVGEVAPLSFQALNFYHIRDGKPAQDYPWLKGVKLIEPHRETTLSVSSPRD 164          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.800e-18
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  103 AGGATAV----QPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            AGGA++     Q LAFTALNFYHVRDGKPGQDYPWLKD K++EP+R+TTL+V  PR+
Sbjct:   99 AGGASSSGESDQALAFTALNFYHVRDGKPGQDYPWLKDFKLVEPHRETTLAVEAPRE 155          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.260e-18
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1
Query:  127 PLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            PL+FTALNFYHVRDGKP QDYPWLKD+K+IEP+R+TTL V  PRD
Sbjct:  132 PLSFTALNFYHVRDGKPAQDYPWLKDVKLIEPHRETTLDVETPRD 176          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.630e-16
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 1
Query:  106 GGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            G AT + PL+F A NFYH+RDGKP  DYPWLK++K+IEP+R+TT +V++PRD
Sbjct:  121 GVATELAPLSFEATNFYHIRDGKPALDYPWLKEVKLIEPHRETTFTVSSPRD 172          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.630e-16
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   97 HTAGGAT-AVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            H  G AT A  PLAF A NFYHVRDGKP  DYPWL+D+K++EP+R+TTLSV +PR+
Sbjct:   94 HRPGLATTAPPPLAFHARNFYHVRDGKPASDYPWLRDVKLVEPHRETTLSVDDPRE 149          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.870e-16
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1
Query:  121 VQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            V PL+F ALNFYH+RDGKP QDY WL+D+K+IEP+R+TTL V++PRD
Sbjct:   90 VAPLSFEALNFYHIRDGKPAQDYTWLRDVKLIEPHRETTLLVSSPRD 136          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.250e-14
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = 1
Query:  130 LAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD 261
            L+F A NFY +RDGKP QDYPWLKD+K+IEP+R+TT +V++PRD
Sbjct:  166 LSFEATNFYQLRDGKPAQDYPWLKDVKLIEPHRETTFTVSSPRD 209          
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Match: A0A6H5KGP3_9PHAE (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.080e-9
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   40 GRSGKFVEVGTDAVENSLVHTAGGATAVQPLAFTALNFYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTN 252
            GR+ +FVE    A   +L     G    Q  AFTALNF HVRDGKPGQDYP+    K++EP R+TTL+ ++
Sbjct:   94 GRTARFVEEHAAAGGGALSSGESG----QAQAFTALNFCHVRDGKPGQDYPF----KLVEPRRETTLAASS 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49801.12199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JY30_9PHAE2.080e-2060.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRR4_9PHAE2.040e-1970.37TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5K485_9PHAE7.090e-1967.86TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC28_ECTSI1.800e-1870.18TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC42_ECTSI6.260e-1880.00TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5J7R8_9PHAE2.630e-1663.46TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J676_9PHAE2.630e-1666.07TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7FW00_ECTSI4.870e-1670.21Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D8LC46_ECTSI5.250e-1468.18Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
A0A6H5KGP3_9PHAE2.080e-949.30Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49801contigH-elongata_contig49801:3247..3509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size265
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930820.6797416-CDS-H-elongata_contig49801:3246..35071622930820.6797416-CDS-H-elongata_contig49801:3246..3507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49801 3247..3507 +
1691679584.5128922-CDS-H-elongata_contig49801:3246..35071691679584.5128922-CDS-H-elongata_contig49801:3246..3507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49801 3247..3507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49801.12199.1prot_H-elongata_contig49801.12199.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49801 3247..3507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49801.12199.1

>prot_H-elongata_contig49801.12199.1 ID=prot_H-elongata_contig49801.12199.1|Name=mRNA_H-elongata_contig49801.12199.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
TSIGRDYHAATGPGRSGKFVEVGTDAVENSLVHTAGGATAVQPLAFTALN
FYHVRDGKPGQDYPWLKDMKIIEPYRDTTLSVTNPRD
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mRNA from alignment at H-elongata_contig49801:3247..3509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49801.12199.1 ID=mRNA_H-elongata_contig49801.12199.1|Name=mRNA_H-elongata_contig49801.12199.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=263bp|location=Sequence derived from alignment at H-elongata_contig49801:3247..3509+ (Himanthalia elongata Himel1 dioecious)
ACGAGTATCGGGCGTGACTATCATGCAGCGACGGGTCCTGGAAGGAGTGG CAAGTTCGTTGAGGTCGGGACCGATGCGGTTGAAAACTCCTTAGTCCATA CAGCTGGGGGAGCCACGGCAGTTCAACCGTTAGCCTTCACAGCACTCAAC TTTTACCATGTTCGAGATGGCAAGCCTGGTCAAGACTATCCATGGCTCAA AGATATGAAGATTATCGAGCCTTACCGAGACACAACGCTTTCTGTCACAA ACCCCCGCGATGG
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Coding sequence (CDS) from alignment at H-elongata_contig49801:3247..3509+

>mRNA_H-elongata_contig49801.12199.1 ID=mRNA_H-elongata_contig49801.12199.1|Name=mRNA_H-elongata_contig49801.12199.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig49801:3247..3509+ (Himanthalia elongata Himel1 dioecious)
ACGAGTATCGGGCGTGACTATCATGCAGCGACGGGTCCTGGAAGGAGTGG
CAAGTTCGTTGAGGTCGGGACCGATGCGGTTGAAAACTCCTTAGTCCATA
CAGCTGGGGGAGCCACGGCAGTTCAACCGTTAGCCTTCACAGCACTCAAC
TTTTACCATGTTCGAGATGGCAAGCCTGGTCAAGACTATCCATGGCTCAA
AGATATGAAGATTATCGAGCCTTACCGAGACACAACGCTTTCTGTCACAA
ACCCCCGCGATACGAGTATCGGGCGTGACTATCATGCAGCGACGGGTCCT
GGAAGGAGTGGCAAGTTCGTTGAGGTCGGGACCGATGCGGTTGAAAACTC
CTTAGTCCATACAGCTGGGGGAGCCACGGCAGTTCAACCGTTAGCCTTCA
CAGCACTCAACTTTTACCATGTTCGAGATGGCAAGCCTGGTCAAGACTAT
CCATGGCTCAAAGATATGAAGATTATCGAGCCTTACCGAGACACAACGCT
TTCTGTCACAAACCCCCGCGAT
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