mRNA_H-elongata_contig49702.12178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49702.12178.1
Unique NamemRNA_H-elongata_contig49702.12178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: A0A6H5KZT2_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZT2_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.360e-42
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYVEGKPVQ 342
            MMTEFKDQGESD KI++MITKENF KY+E+VRKNVTRGL+ SL+ THIAEKE L ++  +VDD++D +RAQAKGQE DEAK RD IEA+LE+ +VLDWI++RS IT++  KPV+
Sbjct:  403 MMTEFKDQGESDAKIQSMITKENFAKYVEVVRKNVTRGLTLSLMFTHIAEKEGLSYEKSEVDDQMDLLRAQAKGQEFDEAKARDKIEAQLEREMVLDWIDDRSKITWLPAKPVE 516          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: A0A836CEY7_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.660e-24
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 MMTEFKDQG-ESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYVEGKP 336
            MM + K QG  SDE+++ MIT ENF+KY +I R + T+ L  SL ++ IAEKE L+ +P +VDD+++ +RA+AKG+  DEA  R+ +EA LEK +VL WI ERSTI Y E  P
Sbjct:  345 MMADMKAQGTHSDEELRGMITPENFNKYKDIARGSTTKQLQVSLALSDIAEKEGLQVNPLEVDDQMELLRAEAKGEPFDEAAARERVEATLEKEMVLQWIAERSTINYTEVAP 457          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: A0A6T5LN79_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LN79_HETAK)

HSP 1 Score: 98.6 bits (244), Expect = 9.140e-22
Identity = 56/111 (50.45%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 MMTEFKDQG-ESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQ-EIDEAKVRDAIEARLEKNLVLDWIEERSTITYVE 327
            MM + K +G +SDE++K MIT ENF+KY EIVR +VTRGL+AS+++  IA++E L  D  +V+D++  V+ QA+G    DE  VR  IEA L+KN+VLDW+ ++ TIT+ E
Sbjct:  386 MMADMKTEGSKSDEELKEMITPENFEKYKEIVRPSVTRGLAASIILADIAKREELAIDELEVEDQLQLVKNQARGDPNFDEEGVRARIEATLQKNIVLDWLADKGTITWNE 496          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: R7Q214_CHOCR (Peptidylprolyl isomerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q214_CHOCR)

HSP 1 Score: 95.1 bits (235), Expect = 1.500e-20
Identity = 50/114 (43.86%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    1 MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYV---EGK 333
            M++ FKD G SD+++K M+TKENF+ Y +  + NV + L  +  ++ IA+++ +K D ++V+++I  VRA+ KGQE++E K+RD +EA+LE++LVL +I+E +T+T V   EGK
Sbjct:  372 MLSSFKDNGMSDDQVKAMVTKENFELYKKRAKGNVEKNLKVNFAVSKIAKEKDIKIDAEEVENQIALVRAELKGQEMEEEKIRDQVEAQLERDLVLKYIKETATVTLVKKEEGK 485          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: A0A7S2G352_9STRA (Peptidylprolyl isomerase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G352_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.480e-19
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQA--KGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYVEGKP 336
            MM+EF+ QG  DE+IK MITKE F+KY +I   N+ + L +SL +  IA KE +K D   V+D++  ++AQA  KG++ D+   RD IE +++++LVL+W+ ER  I +V+  P
Sbjct:  386 MMSEFRAQGTPDEEIKKMITKEGFEKYKKIATPNIVKVLKSSLAVNDIANKEGIKVDKLDVEDQVALIKAQAEQKGEDFDDKTARDQIECQMQRDLVLNWLAERVEIEFVDVAP 499          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: A0A2V3J6T1_9FLOR (Peptidylprolyl isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6T1_9FLOR)

HSP 1 Score: 92.4 bits (228), Expect = 1.630e-19
Identity = 48/111 (43.24%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYVEGK 333
            M++ FKD+G SDE++K+M+TKEN++ Y E  + NV + L  +  ++ IA+ ++L FD ++V++++  VRA+ KG+E+DE +VRD IEA+LE+ LVL  I++ + +T V  K
Sbjct:  500 MLSSFKDKGMSDEQVKSMVTKENYEMYKERAKGNVEKSLRVNFAVSQIAKDQNLAFDEKEVENQMALVRAELKGEEMDEQRVRDQIEAQLERELVLQHIKKSAKVTLVPPK 610          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: A0A7S1XHY7_9RHOD (Peptidylprolyl isomerase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHY7_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 3.340e-16
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYV 324
            MMT+FK QG  D ++K MI  EN++KY +  R NV R L  S     IAE E +    Q+++D+I  VRA+ KG+E+DE K+R+++EA L +  VL+ I   + IT V
Sbjct:  332 MMTDFKQQGMDDAQVKAMINPENYEKYAKNARPNVIRALKLSFAHARIAEVEGMAPTAQEIEDQITLVRAELKGEEVDEEKLRESVEAELTREKVLELIRSSAKITMV 439          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: H6WB92_VAULI (Peptidylprolyl isomerase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB92_VAULI)

HSP 1 Score: 82.4 bits (202), Expect = 4.600e-16
Identity = 42/94 (44.68%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 MMTEFKDQGESDE-KIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKN 279
            MM + K QG+ D+ +++ MIT ENF+KY E+VR++ T+ L  SL ++ IAEKE ++ D  +++D+++ +RA+ KG+E DEA  ++ IEA L+KN
Sbjct:  345 MMADMKSQGQQDDAELRKMITPENFNKYKEVVRESTTKQLKVSLALSMIAEKEGIELDQGEIEDQLELIRAEVKGEEFDEAVAKERIEATLQKN 438          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: K8Z9T8_NANGC (Peptidylprolyl isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z9T8_NANGC)

HSP 1 Score: 81.6 bits (200), Expect = 9.370e-16
Identity = 45/109 (41.28%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYVE 327
            MM E   QG+S+E++K MITKENF+KY EI      + L   +    +AE E L+ DP ++ D+ID  + +A+ Q +DE  +RD +EA+L  ++VLD + +++ ITYV+
Sbjct:  388 MMQEMSTQGKSEEEVKKMITKENFEKYREIAYPQTVKTLMLGVATAKVAEDEGLQVDPLELQDQIDLRKLEAERQGLDEKALRDQLEAKLLADMVLDRLADQADITYVD 496          
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Match: A0A7S2DP20_9EUKA (Peptidylprolyl isomerase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DP20_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 2.500e-15
Identity = 41/111 (36.94%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    1 MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAEKESLKFDPQQVDDEIDEVRAQA--KGQEIDEAKVRDAIEARLEKNLVLDWIEERSTITYVE 327
            M+ + ++QG++DEK+K +IT EN+++Y +I R  VT  + A + +  +++++ L      VDDE+  ++AQA  +G++  E++VR  + A LEK++VL+W+E  +T+T VE
Sbjct:  404 MLADMREQGQTDEKLKEIITPENYERYKKISRPMVTSTIKADMALKAVSQQQGLTVPEDSVDDEVMTLQAQALQRGEKFKESEVRPKVRASLEKSMVLNWLESHATVTIVE 514          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49702.12178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KZT2_9PHAE3.360e-4268.42Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CEY7_9STRA1.660e-2451.33Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A6T5LN79_HETAK9.140e-2250.45Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
R7Q214_CHOCR1.500e-2043.86Peptidylprolyl isomerase n=1 Tax=Chondrus crispus ... [more]
A0A7S2G352_9STRA1.480e-1943.86Peptidylprolyl isomerase n=2 Tax=Dictyocha speculu... [more]
A0A2V3J6T1_9FLOR1.630e-1943.24Peptidylprolyl isomerase n=1 Tax=Gracilariopsis ch... [more]
A0A7S1XHY7_9RHOD3.340e-1643.52Peptidylprolyl isomerase n=1 Tax=Erythrolobus aust... [more]
H6WB92_VAULI4.600e-1644.68Peptidylprolyl isomerase n=1 Tax=Vaucheria litorea... [more]
K8Z9T8_NANGC9.370e-1641.28Peptidylprolyl isomerase n=3 Tax=Monodopsidaceae T... [more]
A0A7S2DP20_9EUKA2.500e-1536.94Peptidylprolyl isomerase n=1 Tax=Haptolina brevifi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49702contigH-elongata_contig49702:2357..4151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2850.Phatrdraft1648
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs2QUET@2759,2XB6F@2836,COG0544@1
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted FKBP and Trigger factor domain protein
Ec32 orthologEc-08_001030.1
Exons4
Model size342
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49702.12178.1prot_H-elongata_contig49702.12178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49702 2357..4151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.3376071-CDS-H-elongata_contig49702:2356..24161622930818.3376071-CDS-H-elongata_contig49702:2356..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 2357..2416 -
1691679583.324844-CDS-H-elongata_contig49702:2356..24161691679583.324844-CDS-H-elongata_contig49702:2356..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 2357..2416 -
1622930818.3539932-CDS-H-elongata_contig49702:2864..29811622930818.3539932-CDS-H-elongata_contig49702:2864..2981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 2865..2981 -
1691679583.3376112-CDS-H-elongata_contig49702:2864..29811691679583.3376112-CDS-H-elongata_contig49702:2864..2981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 2865..2981 -
1622930818.3708565-CDS-H-elongata_contig49702:3723..38221622930818.3708565-CDS-H-elongata_contig49702:3723..3822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 3724..3822 -
1691679583.3520422-CDS-H-elongata_contig49702:3723..38221691679583.3520422-CDS-H-elongata_contig49702:3723..3822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 3724..3822 -
1622930818.3858247-CDS-H-elongata_contig49702:4085..41511622930818.3858247-CDS-H-elongata_contig49702:4085..4151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 4086..4151 -
1691679583.3627121-CDS-H-elongata_contig49702:4085..41511691679583.3627121-CDS-H-elongata_contig49702:4085..4151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49702 4086..4151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49702.12178.1

>prot_H-elongata_contig49702.12178.1 ID=prot_H-elongata_contig49702.12178.1|Name=mRNA_H-elongata_contig49702.12178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MMTEFKDQGESDEKIKNMITKENFDKYLEIVRKNVTRGLSASLLMTHIAE
KESLKFDPQQVDDEIDEVRAQAKGQEIDEAKVRDAIEARLEKNLVLDWIE
ERSTITYVEGKPVQ
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mRNA from alignment at H-elongata_contig49702:2357..4151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49702.12178.1 ID=mRNA_H-elongata_contig49702.12178.1|Name=mRNA_H-elongata_contig49702.12178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1795bp|location=Sequence derived from alignment at H-elongata_contig49702:2357..4151- (Himanthalia elongata Himel1 dioecious)
ATGATGACAGAGTTCAAGGATCAGGGAGAATCCGATGAAAAAATCAAGAA TATGATAACGAAGGAGGTGAGCGGCTGGAAAATGATCTGAGGCAAGAGAG CGGGGGAATTTGATCTGTCGGGGGGGATAGCTGCTGATACGAAGGTCGAT TGAAAAAAGTGCAGCGCTCGATATTAACCTTCATGAACCAATTCTCTGAG GTAAAGTATTGCGGTGCATAGGATAAACTACTCTAATCCTTGAATATTAC TAAAATAGTATATTGAAAACAGCGTGTCGCATCCGTACCCCACCGCCCAC CCTTTTCCCCGCGCTGTAATTGGTTAAAGAATTTTGATAAGTACTTGGAG ATCGTTCGGAAGAACGTGACGCGAGGGCTTTCGGCGAGTCTCCTGATGAC GCACATTGCCGAAAAGGAGAGCCTCAAGGTATGCATGTTTTTACTTATAC TTGTTTAAAGTGTGTGTATGTGTGTTTTATTTATTTTATTATCATCGTGC CTTGCTTCCGCCAAACACGAGGGATCGACCTGCGATTGCCTTGCTAGCTT TTGCTTCCGCCAATGGGGGGGTAGGGCGTCTGTTTACAGGGTGCTTCTCA CTCGGGAGCCACGGCTTGTGTTGCCTCGTACGGGCTTACCCCTTAACCCT TTTGGAACTGGATTTCAAGTTTTATATTGAATTTAGTGTGTAAAAACAGA GCGAGTTTCCTAGGGGTTAAAAAGTTTCCTTGCTGCTGATGCAAATGCTC GTGGTTGTTTTACGCGGCGGCAAACAAAAGGCGACTCATCGACCAAGTGC AAGGTAGTACACTCACTATGAATAATGGGAGACTGTAGACGGTGTAAAAT CCGAGACAAGGCTGTCGTTCCGTGGTACCATTGAACGCAGCAACGAGGCA GAATATGGTACCGTTTGGATTGTCTCTGCGTCGCTCGCTCGCCGTCCTTC CTTCTCCCCTTTCCTCGATGGTGTCTGTGACTGATTCTTGGAAGCAGTAA ACATCTAGAATATAGAGACGATTATAAACAGAATAGATTTATCCTTTTGT TTGGTTGGACGGTTGGTTCTGAGTGCTTTTCGACGAATCCCTCACTGAAG TTTGTGGCCCGGCCCCGCTTCTGTTCCGCCTGCTGATACTCTCCGTTCGT TGTGTCCGTGGCCCGCCCAGTTCGATCCCCAACAGGTGGACGATGAAATC GACGAGGTCCGAGCGCAGGCGAAAGGGCAGGAGATCGATGAGGCGAAAGT GCGCGACGCCATCGAGGCGAGGCTAGAGAAGAATCTGGTGAGGAGAGGAG AATAGGAGGATGATATATACTATACTTTAACCCCTAGTACTAGTCAGTTC AAGATCGGGTGGCACTGTAATGACTGGTCATTTATTGGAAAAATGTCCTG CAGGGCATGATGGGACCACAGACCACCGCTGTACCGCTGTTTTGTGTCAA GTTGTTTGCCATACGTGACCTCCTGTACCTTTACTTTCGACTACAATAGG CTCGTTGCGGCGTAGCACACACCTCTGTTGAACTGCTTGACCTTTTCCGA GCCCCCTCCCCCCCCCCCGCCTCCAACGCCGAGCTGATCATAACAGCCAT TTAGCAGTATGGCAGTTGATCCCCGCGACGTTCAACCGCACCTGCTTTTC CGGCGGTCGTCGATGGATTATGGGTCAACGATTATGGATTGTTTATCGCC GCCAAACTTTTAAAAATCTACTTGATCAACTTCAGGTGCTGGACTGGATC GAGGAACGATCCACGATCACGTACGTGGAAGGCAAGCCTGTCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig49702:2357..4151-

>mRNA_H-elongata_contig49702.12178.1 ID=mRNA_H-elongata_contig49702.12178.1|Name=mRNA_H-elongata_contig49702.12178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig49702:2357..4151- (Himanthalia elongata Himel1 dioecious)
ATGATGACAGAGTTCAAGGATCAGGGAGAATCCGATGAAAAAATCAAGAA
TATGATAACGAAGGAGATGATGACAGAGTTCAAGGATCAGGGAGAATCCG
ATGAAAAAATCAAGAATATGATAACGAAGGAGAATTTTGATAAGTACTTG
GAGATCGTTCGGAAGAACGTGACGCGAGGGCTTTCGGCGAGTCTCCTGAT
GACGCACATTGCCGAAAAGGAGAGCCTCAAGAATTTTGATAAGTACTTGG
AGATCGTTCGGAAGAACGTGACGCGAGGGCTTTCGGCGAGTCTCCTGATG
ACGCACATTGCCGAAAAGGAGAGCCTCAAGTTCGATCCCCAACAGGTGGA
CGATGAAATCGACGAGGTCCGAGCGCAGGCGAAAGGGCAGGAGATCGATG
AGGCGAAAGTGCGCGACGCCATCGAGGCGAGGCTAGAGAAGAATCTGTTC
GATCCCCAACAGGTGGACGATGAAATCGACGAGGTCCGAGCGCAGGCGAA
AGGGCAGGAGATCGATGAGGCGAAAGTGCGCGACGCCATCGAGGCGAGGC
TAGAGAAGAATCTGGTGCTGGACTGGATCGAGGAACGATCCACGATCACG
TACGTGGAAGGCAAGCCTGTCCAAGTGCTGGACTGGATCGAGGAACGATC
CACGATCACGTACGTGGAAGGCAAGCCTGTCCAA
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