mRNA_H-elongata_contig49575.12152.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: D7FIP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP6_ECTSI) HSP 1 Score: 511 bits (1315), Expect = 1.870e-169 Identity = 292/476 (61.34%), Postives = 337/476 (70.80%), Query Frame = 1
Query: 187 MRLRSSGIPAHSYGQAYVPWDHLVIDQRWDITIPVVTERDVAVAQ-ASRRNVDPREFLTAAAREDRPLGMALNGVPFFSPLTARGTDTVNPLPGEVATNDTLFDKCAGSLQTTTGAYGYRVMPPCLHGDIFS-VSERGGYDPALALIGFGSPDLAIDETLPPESPLLGFAMDGRRLYGPFDATRSLAWGLDVCNGRWEVGGRYKETTGRVSDNRTYTYRATPEFPYLIGCPGPAGQEDGLEDP-----------AADPPGSMEYTTVDGGFIIETPDDECPAGSYLSVDSGHCTACHAGTFGKDPGLVGQGCPGVCPRRYYCPEGTATPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTVANSNECGAVSYFCPQGSGERKPASVGHYTTPEAPPGSSEMEIAAS--RRTRFTRRIVSGRFQGEPGTYCAAGVRRFCPPGTFGATAGLAAHACSGPCPAGSYCPEGSAEPI 1569
MRL SSGIP HSYGQ PW HLV +QRWD+TIP+ ++ D AQ A R+VDP EFLT AAREDRP+GMALNGVPFFSPLTA G DTVNPLPG+VA N+TLFD+CAGSLQ TGAYGYRVMPPCLHG+ + V E GGY A L+GF + + P ESPLLGFAMDGRRLYGP+D+T SLAWGLDVCNGRWE + + G + YTYRATP FPYL+GC GPAG G A G Y+ ++GGFI+E +D CPAGS+LS+DSG C AC AGT+GK GLVG+GCPGVCPR +YCP+GTATP LR XXXXXXXXXXXXXXXXXXXXXXXXXXX +SNECG++ Y+CP+GSG+R P + G+YTT P S +A + T RR+ SG Q E GT+C G RR CP GTFGAT GL + CS CP GSYCPEGS EPI
Sbjct: 1 MRLVSSGIPVHSYGQGDEPWAHLVKEQRWDLTIPLTSDEDGIDAQIALSRDVDPTEFLTNAAREDRPIGMALNGVPFFSPLTATGADTVNPLPGKVAENETLFDECAGSLQAKTGAYGYRVMPPCLHGETSAAVLEAGGYKAANVLLGFEDENPEGLPSTPRESPLLGFAMDGRRLYGPYDSTLSLAWGLDVCNGRWEE--QVDDIGGSTAGVYAYTYRATPSFPYLVGCWGPAGVPIGAASAMTTAAGAAAGDVASESGGFVYSKIEGGFIVEAVEDGCPAGSFLSIDSGACEACRAGTYGKSAGLVGKGCPGVCPRGFYCPDGTATPTLRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPDSNECGSMRYYCPKGSGQRTPVTSGYYTTTAVTPDGSRPGASADAEQETATARRVRSGEAQCEAGTFCVGGRRRPCPSGTFGATKGLTSSNCSDVCPEGSYCPEGSTEPI 474
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: A0A7S2S4K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4K2_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.460e-31 Identity = 135/416 (32.45%), Postives = 174/416 (41.83%), Query Frame = 1
Query: 103 GAKPACPTHLFDADLVTAK-DWDRD-GRWFMRLRSSGIPAHSYGQAYVPWDHLVIDQRWDITIPVVTERDVAVAQASRRNVDPREFLTAAAREDRPLGMALNGVPFFSPLTARGTDTVNPLPGEVATNDTLFDKCAGS-LQT-TTGAYGYRVMPPCLHGDIFSVSERGGYDPALALIGFGSPDLAIDETLPPESPLLGFAMDGRRLYGPFDATRSLAWGLDVCNGRWEVGGRYKETTGRVSDNRTYTYRATPEFPYLIGCPGPAGQEDGLEDPAADPPGSMEYTTVDGGFIIETPDDECPAGSYLSVDSGHCTACHAGTFGKDPGLVGQGCPGVCPRRYYCPEGTATPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTVANSNECGAVSYFCPQGSGERKPASVGHYTTPE 1338
GA CP+ F V A +D D G + + S+G+P H+ + + + L Q W ++ + R +A PR A +D P+G+ALNGVPFF+ P P + D+C G+ L T T+GAY YR PPCL G YD L GF + +LG+ +DG LYGPFDA +L LD CNG++ G Y Y ATP FPY+ GC GP Q ++ PP + + PD ECPAG S+ G C C G G C C +YCP GT P L XXXXXXXX ST A + CG FCP+GS P G+YT PE
Sbjct: 54 GALDRCPSGDFRGAGVDAHCSFDFDLGDLVLHVTSTGLPDHT---SRLVSEGLAQSQPWSFSLRL--PRGGVPPEA------PRPEGGRALPQDSPVGVALNGVPFFAA----------PAPLDELEAGEALDECLGTTLDTATSGAYVYRAAPPCLDGQ-----TTVAYDLQSMLEGFSRR----------QPKILGYMLDGFPLYGPFDAAGNLHTDLDSCNGKFVDGA--------------YAYYATPNFPYIAGCFGPGVQ---VQQQVELPPLASSSSA---------PDTECPAGMQPSLLGG-CELCPGGRHGPR-------CERECGPGFYCPPGTLAP-LPCPAGRYGASPGLVSADCSGPXXXXXXXXEQSTSATAQPCGGPHVFCPEGSTLPTPVVAGYYTVPE 398
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: F0YLW7_AURAN (MYND-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLW7_AURAN) HSP 1 Score: 120 bits (302), Expect = 5.830e-25 Identity = 112/378 (29.63%), Postives = 157/378 (41.53%), Query Frame = 1
Query: 112 PAC----PTH-LFDADLVTAK--DWDRDGRWFMRLRSSGIPAHSYGQAYV--PWDHLVIDQRWDITIPVVTERDVAVAQASRRNVDPREFLTAAAREDRPLGMALNGVPFFSPLTARGTDTVNPLPGEVATNDTLFDKCAGSLQTTTGAYGYRVMPPCLHGDIFSVSERGGY-DPALAL-IGFGSP------DLAIDETLPPESPLLGFAMDGRRLYGPFDATRSLAWGLDVCNGRWEVGGRYKET-----------TGRVSDNRTYTYRATPEFPYLIGCPGPAGQEDGLEDPAADPPGSMEYTTVDGGFIIETPDDECPAGSYLSVDSGHCTACHAGTFGKDP---------GLVGQGCPGVCPRRYYCPEGTATP 1134
PAC P+H L DAD+ + D+D + + ++G+P H Y ++ P+D +V +P D A + + + A P+G A++GVP F G + V P PG + D C G ++GAY YR+ PPCL+GD +RG Y PA A +GFG+ A P PL+G +DG L+GP D GLD C G+++ R + + T + Y Y AT PY I C GP P PP S VD G +CPAG +++ G C AC AG + + G + C G C YCP GT P
Sbjct: 12 PACALDFPSHFLRDADVAVEQLVDYDANAEFLEISSATGLPLHRYDASFGAHPYDAVV-------ALP----GDPAAYRQRGFHFGGADLPAAG-----PIGYAVDGVPIFPYYDGDGANAVEPPPGGAPADR---DGCWGFRDPSSGAYVYRIAPPCLYGD-----DRGTYGSPAAAAHLGFGAAVAPGGTAAARARGRPGSVPLVGVMVDGFPLWGPLDKDGKEHGGLDECGGKYQGSTRVRNSQLQRLRSRPFSTRKYDGRGRYAYYATAAPPYTIACFGPGVAAAAGLPPT--PPASPGAGAVDAG-------PDCPAGRHVAA--GACAACPAGRYALEAPAGRAAYAAGSPARHCGGSCGLGAYCPAGTPRP 354
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: A0A2D4CF56_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF56_PYTIN) HSP 1 Score: 112 bits (279), Expect = 1.200e-22 Identity = 72/195 (36.92%), Postives = 89/195 (45.64%), Query Frame = 1
Query: 985 CPAGSYLSVDSGHCTACHAGTFGKDPGLVGQGCPGVCPRRYYCPEGTATPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTVANSNECGAVSYFCPQGSGERKPASVGHYTTPEAPPGSSEMEIAASRRTRFTRRIVSGRFQGEPGTYCAAGVRRFCPPGTFGATAGLAAHACSGPCPAGSYCPEGSAEPI 1569
C GSY S G C C AGTFG PGL+ C G C ++CP G ST A CG+ ++CPQGSG R+ G YT + P + + +R + S + Q EPG +C+ G+RR CPPGT G GL ACSGPCPAG YCPE +A PI
Sbjct: 11 CLQGSYQS--GGQCLLCPAGTFGDRPGLLSPACSGPCAPGFFCPAG-------------------------------------STSATLRACGSARFYCPQGSGARRLVDAGFYTM-QLP--FTVDDGGFRQRHEPSSSSASQQRQCEPGFFCSDGIRRPCPPGTVGDRPGLTTAACSGPCPAGFYCPEATAVPI 163
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: A0A024UCP5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCP5_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.440e-19 Identity = 67/197 (34.01%), Postives = 87/197 (44.16%), Query Frame = 1
Query: 985 CPAGSYLSVDSGHCTACHAGTFGKDPGLVGQGCPGVCPRRYYCPEGTATPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTVANSNECGAVSYFCPQGSGERKPASVGHYTTPEAPPGSSEMEIAASRRTRFTRRIVSGRFQGEPGTYCAAGVRRFCPPGTFGATAGLAAHACSGPCPAGSYCPEGSAEPIPC 1575
CP GSY +G T C G +G GL C G CP +YCP GT TPI C S +CP S + + S+G+Y+ P A P S +++ +PG+YCA GV+ CP G+FG T GL + +CSG CPAGSYCP G+ EP+PC
Sbjct: 258 CPPGSYCI--NGLVTPCPLGRYGNATGLTTALCSGPCPEGFYCPVGTETPIA---------------------------------------CLDPSTYCPIESSKPQVVSLGYYSLPTASPTRS-LQLPC-----------------DPGSYCANGVKTKCPAGSFGITLGLTSSSCSGTCPAGSYCPAGTVEPLPC 395
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: A0A067CQQ8_SAPPC (YHYH domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CQQ8_SAPPC) HSP 1 Score: 87.4 bits (215), Expect = 3.570e-14 Identity = 68/232 (29.31%), Postives = 100/232 (43.10%), Query Frame = 1
Query: 184 FMRLRSSGIPAHSYG---QAYVPWDHLVIDQRWDITIPVVTERDVAVAQASRRNVDPREFLTAAAREDRPLGMALNGVPFFSPLTARGTDTVNPLPGEVATNDTLFDKCAGSLQTTTGAYGYRVMPPCLHGDIFSVSERGGYDPALALIGFGSPDLAIDETLPPESPLLGFAMDGRRLYGPFDATRSLAWGLDVCNGRWEVGGRYKETTGRVSDNRTYTYRATPEFPYLIGC 870
F+ + S+G+P +G AY P H + + + +P + NV P + L RP+G+ LNG+PF+S + G NP N + D C G + T GAY Y P CL + V+ G+P SP++G+A+DG +YG +D+T ++ GLD CNG+W V G +Y Y T PY IGC
Sbjct: 4154 FLYVSSTGLPDGVFGPFPNAYNP--HKIKRRAYTFVLP---------RSPTWSNV-PTQVLPG-----RPIGVMLNGIPFYSYTDSSGNSLRNP----ATANYLILDACNGYVDGT-GAYRYYAAPDCLLDALNDVA--------------GTP-----------SPIVGYALDGYPIYGRYDSTGAMPLGLDACNGKWHVDG-------------SYGYHVTDAPPYTIGC 4325
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: D0N856_PHYIT (YHYH domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N856_PHYIT) HSP 1 Score: 85.9 bits (211), Expect = 1.100e-13 Identity = 71/231 (30.74%), Postives = 93/231 (40.26%), Query Frame = 1
Query: 193 LRSSGIPAHSYGQAYVPWDHL-VIDQRWDITIPVVTERDVAVAQASRRNVDPREFLTAAAREDRPLGMALNGVPFFSPLT----ARGTDTVNPLPGEVATNDTLFDKCAGSLQTTTGAYGYRVMPPCLHGDIFSVSERGGYDPALALIGFGSPDLAIDETLPPESPLLGFAMDGRRLYGPFDATRSLAWGLDVCNGRWEVGGRYKETTGRVSDNRTYTYRATPEFPYLIGC 870
+RSSG+P+ SYG ++ V Q + P R A+A A T + D P+G+ +NGVPFF+ + DT NP L DKC G L + G Y Y P CL + + ++ G SPL+GFA DG LYGP+ LD CN GRV D+ TY Y T PYL+GC
Sbjct: 4424 VRSSGVPSESYGSFPNAYNRFSVYKQDYVFQFP----RHPAIAGA-----------TTSLPRDTPIGVMVNGVPFFAAYSDVYGGAVVDTSNPAYS-------LLDKCNG-LVDSGGDYRYYASPDCL---LHELGDKAGQP----------------------SPLIGFAFDGFPLYGPYGENGQTPSDLDACN-------------GRVGDDGTYRYHVTLTAPYLLGC 4593
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: T0QSW7_SAPDV (YHYH domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QSW7_SAPDV) HSP 1 Score: 83.6 bits (205), Expect = 5.810e-13 Identity = 65/232 (28.02%), Postives = 96/232 (41.38%), Query Frame = 1
Query: 184 FMRLRSSGIPAHSYG---QAYVPWDHLVIDQRWDITIPVVTERDVAVAQASRRNVDPREFLTAAAREDRPLGMALNGVPFFSPLTARGTDTVNPLPGEVATNDTLFDKCAGSLQTTTGAYGYRVMPPCLHGDIFSVSERGGYDPALALIGFGSPDLAIDETLPPESPLLGFAMDGRRLYGPFDATRSLAWGLDVCNGRWEVGGRYKETTGRVSDNRTYTYRATPEFPYLIGC 870
F+ + S+GIP +G AY P H + + + +P + NV P L DRP+G+ LNG+PF+S + + G NP + N + D C G + GAY Y P CL A+++ SP++G+A+DG +YG +D+T ++ LD CNG+W GRY Y T PY I C
Sbjct: 4157 FLYVSSTGIPDGVFGPFPNAYNP--HTIKQKAYTFVLP---------RSPTWSNV-PSPVLP-----DRPIGVMLNGIPFYSYMDSSGNSLRNP----ASANYLILDACNGYVDGA-GAYRYYAAPDCLLD-------------------------ALNDVAGTTSPVIGYALDGYPVYGRYDSTGAVPLDLDACNGKWHADGRYG-------------YHVTDTPPYTINC 4328
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: A0A329T208_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T208_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.450e-12 Identity = 103/257 (40.08%), Postives = 123/257 (47.86%), Query Frame = 1
Query: 991 AGSYLSVDSG-HCT-----ACHAGTFGKDPGLVGQGCPGVCPRRYYCPEGTATPI--------------------------LRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTVANSNEC---------------------GAVSYFCPQGSGERKPASVGHYTTPEAPPGSS-----------EMEIAASRR--TRFTRRIVSGRFQGEPGTYCAAGVRRFCPPGTFGATAGLAAHACSGPCPAGSYCPEGSAE 1563
AG + + G +C AC AG FG+ + C CP+ YCPE T P+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX STV C GAV FCP+GS A+ G+YTT +A GSS E A R TR + I + G+YC GV+R CP GT+GAT GL+ AC+GPCPAG YCP G+A+
Sbjct: 121 AGQQIRCEKGFYCVFGIRRACPAGVFGESTRVTSPECSAPCPKGSYCPEATVVPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTVNGVLSCLPSPXXXXXXXXXXXXXXXXXGAVGRFCPKGSSAPTIATAGYYTTWKAYTGSSVTGEQLALQYVEGNSLAIRNQTTRSNQHIC------DKGSYCITGVKRLCPAGTYGATDGLSTAACTGPCPAGFYCPIGTAD 371
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Match: UPI001455B194 (uncharacterized protein LOC117304015 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455B194) HSP 1 Score: 75.9 bits (185), Expect = 5.290e-12 Identity = 56/163 (34.36%), Postives = 70/163 (42.94%), Query Frame = 1
Query: 382 PLGMALNGVPFFSPLTARGTDTVNPLPGEVATNDTLFDKCAGSLQTTTGAYGYRVMPPCLHGDIFSVSERGGYDPALALIGFGSPDLAIDETLPPESPLLGFAMDGRRLYGPFDATRSLAWGLDVCNGRWEVGGRYKETTGRVSDNRTYTYRATPEFPYLIGC 870
P+G+A+NG+PFFSP T+ G D V +FD C G T TGAY Y MP +F V E G P S ++G A DG +YGP D NG G + GR+ D + Y Y AT +FPY IGC
Sbjct: 105 PIGVAINGIPFFSPYTSDGLDAVET---------EVFDDCDGH-PTQTGAYHYHKMPSSC---VFDVIE-------------GQP-----------SSVIGVAFDGFLIYGPNDE-----------NGVTLTSGDLNDCHGRIVDGK-YRYHATSDFPYTIGC 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49575.12152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49575.12152.1 >prot_H-elongata_contig49575.12152.1 ID=prot_H-elongata_contig49575.12152.1|Name=mRNA_H-elongata_contig49575.12152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=536bp MDLLMAVILSAVSPSGATWTTSSSDYNDAPFIKDGAKPACPTHLFDADLVback to top mRNA from alignment at H-elongata_contig49575:632..4076+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49575.12152.1 ID=mRNA_H-elongata_contig49575.12152.1|Name=mRNA_H-elongata_contig49575.12152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3445bp|location=Sequence derived from alignment at H-elongata_contig49575:632..4076+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49575:632..4076+ >mRNA_H-elongata_contig49575.12152.1 ID=mRNA_H-elongata_contig49575.12152.1|Name=mRNA_H-elongata_contig49575.12152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3216bp|location=Sequence derived from alignment at H-elongata_contig49575:632..4076+ (Himanthalia elongata Himel1 dioecious)back to top |