mRNA_H-elongata_contig49563.12151.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49563.12151.1
Unique NamemRNA_H-elongata_contig49563.12151.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.310e-52
Identity = 118/221 (53.39%), Postives = 139/221 (62.90%), Query Frame = 1
Query:    1 KSPTSLEEGGGGGLPTLSLIALLVTFCF------LYVGAEIGFGAWIAVVVLREDLAGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLLLA---DDIIWTAVGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALIAALLGPA----------DG--GRPSVLYASCMVISMFLMVLYYAWCSLI 600
            + P  LE   GGG P                   LYVG E+GFGAW+AVVVLR+DLAG+AGAA MASLFW G+  GRLLAI LAV FSA  LL  NL+  ++SS+LL     D  +W A+GA  FGL MAST+PLAMSLLP AG  Y LS KNSS  V+G ALGEMLVPA IA LLGP+          DG  GR   LY +C  IS+ ++ +Y  WCSL+
Sbjct:  275 EQPFRLEGHEGGGKPXXXXXXXXXXXXXXXXXXXLYVGIEVGFGAWVAVVVLRDDLAGQAGAALMASLFWGGITLGRLLAIQLAVPFSAGVLLTVNLVLGLLSSTLLWVIGRDGFVWAAMGAAGFGLSMASTYPLAMSLLPEAG--YALSEKNSSHFVVGGALGEMLVPACIALLLGPSGSSGNSIGDGDGEPGRSDALYGACFAISLLMVAVYGTWCSLL 493          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: D7FS47_ECTSI (Major facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.860e-22
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  310 DDIIWTAVGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALIAALLGPA--------DG----GRPSVLYASCMVISMFLMVLYYAWCSLI 600
            D  +W A+GA  FGL MAST+PLAMSLLP AG  Y LS KNSSR V+G ALGEMLVPA IA LLGP+        DG    GR + LY +C  +S+ L+ +Y +WCSL+
Sbjct:  325 DGAVWAAMGAAGFGLSMASTYPLAMSLLPEAG--YALSEKNSSRFVVGGALGEMLVPACIALLLGPSSSSSNSIGDGDEEPGRSAALYGACFAVSLLLVAVYGSWCSLL 431          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: A0A2E8RUD3_9BACT (MFS domain-containing protein n=5 Tax=Bacteria TaxID=2 RepID=A0A2E8RUD3_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 7.180e-20
Identity = 58/165 (35.15%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    7 PTSLEEGGGGGLPTLSLIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLLL----ADDIIWTAVGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALI 489
            P   +E     +  + L+ L++T  FL+V AE+  G WIA  VL+  LA EA AA +  +FW  +  GRLL+IP++ R     +L  +L+  ++   L++    +  +IW  VG G+FGL +AS FP+ +S+     K+ T+S + +S + +G ALG +++P LI
Sbjct:  195 PKVQQETTSKPIMDIYLLLLIITLFFLFVSAEVSVGGWIATYVLKSHLADEASAADLTFIFWFSLTIGRLLSIPISTRIHVKYILGVDLLLCLIGVGLIMVWPASLKVIW--VGTGIFGLGVASMFPIGISITE---KYLTVSGQITSLLFVGGALGGIVIPWLI 354          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: A0A7C5E4X7_9CHLR (MFS transporter n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5E4X7_9CHLR)

HSP 1 Score: 95.5 bits (236), Expect = 1.100e-19
Identity = 67/163 (41.10%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   16 LEEGGGGGLPTLSLIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLLLADDIIWTAVGAGLFG--LFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALIAAL 498
            + +GG  G     L+AL+V F FLYVGAE+GFG WI    L   +A E  AA + S FW  +  GRLLAIP+A R     +L  +LIG +VS  L+L       AV AG  G  L MAS FP  +SL   A +  T++ + +    +GA+ G M  P +I  L
Sbjct:  200 VSQGGPAGQVNHRLVALIVLFFFLYVGAEVGFGGWIYTFALDARVADETIAAYLTSAFWGALTVGRLLAIPIAARVRPRYILLGDLIGCLVSIGLILLWPHSLAAVWAGTLGIGLGMASVFPTTISL---AERRMTVTGQVTGWFFVGASAGAMFWPWIIGQL 359          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: A0A3N5KUA6_9PROT (MFS transporter n=1 Tax=Zetaproteobacteria bacterium TaxID=2026807 RepID=A0A3N5KUA6_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 1.440e-18
Identity = 64/160 (40.00%), Postives = 91/160 (56.88%), Query Frame = 1
Query:   16 LEEGGGGGLPTLSLIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLLLADDIIWTAVGAGL--FGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALI 489
            +  GG        L+AL+V F FLY GAEI FG WI    +   L+ +A AA + S FW  +  GRL+A+PLAVRF A  +L A+ +G + S ++LL      +A  AG    GL MAS FP A+SL  A G+   ++ + +    +GA+ G M++P LI
Sbjct:  199 ISTGGVASRANGRLVALIVAFFFLYTGAEIAFGGWIYSYAVALRLSSDAVAAYLTSTFWGALTLGRLVAVPLAVRFPAHTILLADCLGCLTSLAILLLGSHSLSATFAGTCGLGLSMASIFPAALSL--AQGRM-RITGQVTGWFFVGASAGGMVLPWLI 355          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: A0A1F4Q6Z1_9BACT (MFS domain-containing protein n=1 Tax=candidate division NC10 bacterium RBG_16_65_8 TaxID=1801657 RepID=A0A1F4Q6Z1_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 2.890e-18
Identity = 68/166 (40.96%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    4 SPTSLEEGGGGGLPTLS--LIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSS-LLLADDIIW-TAVGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALI 489
            SP + E   G     ++  L+AL+V F FLY GAEI FG WI    +   L+ +A AA + S FW  +  GRLLA+PLAVRF +  +L  + IG + S + LLL    +W T VG    GL MAS FP A+SL  A G+   ++ + +    +GA+ G M++P LI
Sbjct:  201 SPAAPEMSTGRAADKVNGRLVALIVVFFFLYTGAEIAFGGWIYSYAVALRLSSDAVAAYLTSTFWGSLTLGRLLAVPLAVRFPSRSILLIDCIGCLTSLAILLLGSHSLWATFVGTCGVGLSMASIFPAALSL--AQGRM-RITGQVTGWFFVGASAGGMVLPWLI 363          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: A0A5A9NJ29_9TELE (Sodium-dependent glucose transporter 1 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NJ29_9TELE)

HSP 1 Score: 84.3 bits (207), Expect = 1.550e-15
Identity = 63/168 (37.50%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   52 SLIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAG--EAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLLLA----DDIIWTAVGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALIAALLGPADGGRPSVLY 537
            +LI LL  F F YVG+E+ +G++I      +D AG  +A AA + SLFW     GR LAI +A       L+   L+G  VSS LL+     D ++WT     L G+ M++ FP  +S +    ++ T++ ++++  V+GAALGEM++PAL+A LLG     +P ++Y
Sbjct:  275 TLIFLLSMFFFFYVGSEVAYGSFI--FTYAKDYAGMDQARAAGLNSLFWGTFAVGRGLAIFIAACLRPGTLILLCLVGTTVSSLLLVVFSRNDPVLWTCTA--LLGISMSTIFPSGISWVE---QYTTVTGRSAAVFVVGAALGEMVLPALVALLLGHVQN-QPLLMY 434          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: UPI000784D564 (MFS transporter n=1 Tax=Anaerolinea thermolimosa TaxID=229919 RepID=UPI000784D564)

HSP 1 Score: 84.0 bits (206), Expect = 1.570e-15
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 1
Query:   55 LIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLLLADDIIWTAVGAGLFG--LFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALIAALLGP 507
            L+ALLV F FLYVGAE  FG W+    +   L  E  AA + SLFW  +  GRLLAIP+A R     +L  +L G ++S  ++       TA+  G  G  +FMAS FP  ++L   A +   ++ K +S   +GA+ G M +P +I  L  P
Sbjct:  213 LLALLVMFFFLYVGAESSFGGWVYTYTINMGLGTETSAAYLTSLFWGALTIGRLLAIPIASRLRPGVMLGIDLAGCLLSLGIINLFSYSPTALIIGTIGTGIFMASIFPTLINL---AQQKMQITGKITSWFFVGASSGGMFLPWIIGQLFIP 362          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: A0A7C4QAR2_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4QAR2_9CHLR)

HSP 1 Score: 84.0 bits (206), Expect = 1.990e-15
Identity = 64/164 (39.02%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   34 GGLPTLSLIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLLL----ADDIIWTA-VGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALIAALLGPA 510
            GG+    L+ALL    F YVGAE+GFGAW+     R  LA  A AA + S FW  + AGRLL+IPLA R     LL A L G + S         +  ++W A +G G     MA+ FP  M+    A +   L+ + +S   IG +LG M +P LI   + PA
Sbjct:  274 GGVSRYGLVALLTACFFFYVGAEMGFGAWVYTYAERMGLADAASAAYLTSAFWGALTAGRLLSIPLAARLRPRTLLAAALSGCLASVGAAWLWPGSPALLWAAALGTGFS---MATIFPTLMAF---ASRRLALTGQITSFFFIGGSLGGMFLPWLIGQWVEPA 431          
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Match: G3NTB9_GASAC (Major facilitator superfamily domain containing 4B n=2 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3NTB9_GASAC)

HSP 1 Score: 83.6 bits (205), Expect = 2.930e-15
Identity = 64/169 (37.87%), Postives = 100/169 (59.17%), Query Frame = 1
Query:   49 LSLIALLVTFCFLYVGAEIGFGAWIAVVVLREDLAG--EAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSLL--LADDIIWTAVGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVIGAALGEMLVPALIAALLGPADGGRPSVLYAS 543
            ++LIALL  F F YVGAE+ +G++I      +D AG   + AA + SLFW    A R LAI  A       ++  +L+G+ +SS LL   + + +   V +GL+G  MA+TFP  +S +    ++ TL+ + ++  V+GAALGEM++PAL+  LLG     +P ++Y S
Sbjct:  213 VALIALLFXFFFSYVGAEVAYGSFI--FTFAKDYAGMNPSEAAGLNSLFWAAFAACRGLAIFFAACMYPGTMILLSLVGSTLSSLLLCLFSKERVALWVCSGLYGASMATTFPSGISWVE---QYTTLTGRTAAAFVVGAALGEMVLPALVGFLLGKFHD-QPVLMYLS 375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49563.12151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9W6_9PHAE1.310e-5253.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS47_ECTSI1.860e-2255.96Major facilitator superfamily sugar transporter n=... [more]
A0A2E8RUD3_9BACT7.180e-2035.15MFS domain-containing protein n=5 Tax=Bacteria Tax... [more]
A0A7C5E4X7_9CHLR1.100e-1941.10MFS transporter n=1 Tax=Anaerolineae bacterium Tax... [more]
A0A3N5KUA6_9PROT1.440e-1840.00MFS transporter n=1 Tax=Zetaproteobacteria bacteri... [more]
A0A1F4Q6Z1_9BACT2.890e-1840.96MFS domain-containing protein n=1 Tax=candidate di... [more]
A0A5A9NJ29_9TELE1.550e-1537.50Sodium-dependent glucose transporter 1 n=1 Tax=Tri... [more]
UPI000784D5641.570e-1538.56MFS transporter n=1 Tax=Anaerolinea thermolimosa T... [more]
A0A7C4QAR2_9CHLR1.990e-1539.02MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
G3NTB9_GASAC2.930e-1537.87Major facilitator superfamily domain containing 4B... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49563contigH-elongata_contig49563:2336..3757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score83.2
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog69293.ENSGACP00000008587
Preferred nameKIAA1919
KEGG koko:K08175
KEGG TC2.A.1.7
GOsGO:0003674,GO:0005215,GO:0005355,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0015144,GO:0015145,GO:0015149,GO:0015749,GO:0022857,GO:0034219,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:1904659
EggNOG free text desc.Major facilitator superfamily domain containing 4B
EggNOG OGs28Z0Q@1,2R5UW@2759,38BCW@33154,3BHS8@33208,3D1D3@33213,4846H@7711,48X24@7742,49VFB@7898
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons4
Model size600
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49563.12151.1prot_H-elongata_contig49563.12151.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49563 2336..3757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.7684326-CDS-H-elongata_contig49563:2335..25261622930815.7684326-CDS-H-elongata_contig49563:2335..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 2336..2526 -
1691679582.2500196-CDS-H-elongata_contig49563:2335..25261691679582.2500196-CDS-H-elongata_contig49563:2335..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 2336..2526 -
1622930815.7847347-CDS-H-elongata_contig49563:2842..29421622930815.7847347-CDS-H-elongata_contig49563:2842..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 2843..2942 -
1691679582.2675793-CDS-H-elongata_contig49563:2842..29421691679582.2675793-CDS-H-elongata_contig49563:2842..2942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 2843..2942 -
1622930815.7999036-CDS-H-elongata_contig49563:3157..32841622930815.7999036-CDS-H-elongata_contig49563:3157..3284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 3158..3284 -
1691679582.2754664-CDS-H-elongata_contig49563:3157..32841691679582.2754664-CDS-H-elongata_contig49563:3157..3284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 3158..3284 -
1622930815.8162782-CDS-H-elongata_contig49563:3575..37571622930815.8162782-CDS-H-elongata_contig49563:3575..3757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 3576..3757 -
1691679582.283052-CDS-H-elongata_contig49563:3575..37571691679582.283052-CDS-H-elongata_contig49563:3575..3757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49563 3576..3757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49563.12151.1

>prot_H-elongata_contig49563.12151.1 ID=prot_H-elongata_contig49563.12151.1|Name=mRNA_H-elongata_contig49563.12151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
KSPTSLEEGGGGGLPTLSLIALLVTFCFLYVGAEIGFGAWIAVVVLREDL
AGEAGAASMASLFWTGMMAGRLLAIPLAVRFSADCLLWANLIGAVVSSSL
LLADDIIWTAVGAGLFGLFMASTFPLAMSLLPAAGKWYTLSAKNSSRMVI
GAALGEMLVPALIAALLGPADGGRPSVLYASCMVISMFLMVLYYAWCSLI
back to top

mRNA from alignment at H-elongata_contig49563:2336..3757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49563.12151.1 ID=mRNA_H-elongata_contig49563.12151.1|Name=mRNA_H-elongata_contig49563.12151.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1422bp|location=Sequence derived from alignment at H-elongata_contig49563:2336..3757- (Himanthalia elongata Himel1 dioecious)
AAATCCCCAACGTCGCTTGAAGAAGGAGGGGGGGGGGGGCTACCGACGCT TTCCCTCATTGCCCTCCTAGTGACTTTTTGTTTTCTTTACGTCGGAGCCG AGATCGGATTCGGCGCTTGGATCGCAGTGGTGGTGCTGCGCGAAGATCTG GCAGGAGAAGCGGGCGCTGCATCTATGGCCAGGTGTGGAAAGGCTGCAAG ACGATATTACGTGGGCACAATAACGTGGCTCTACCTTCGGGCGACAAATT TCGCGTCTGGTCGATGTCTCGCTTGCGCAGCGTTCTCTTCGGTCGCTAGA GTTACGCTGTTCAGCTTCGTTGCTTCTGCTACTAAAGATACAAAATAGGT TTAAACCGGACCTTGGGACACGTGGTCCTGGATAGAATTGCCTTGCAATT CCCTCTCTGCAGCCCCTCGGGACGATCTCCAACACAGTGCTTCGTTGCGT CCGCCTTTGTTTCTTCACTCTAGCCTATTTTGGACAGGCATGATGGCAGG GAGGTTACTCGCTATTCCGCTGGCCGTTCGTTTCTCCGCCGACTGTCTCC TGTGGGCGAATCTTATCGGGGCTGTTGTGTCTTCCTCGCTCCTGTTAGCT GTTGGGAAGGCGAGTCACGAGCTCAACATTTGACTGAATTATATAATATT ATAGTAGCGTGGTATGAGGTCTCTGGTCCTTCCTAGATATGTGACCGAGT AAGACTCCTTCCTGTTTCTATTTTTGCCATAACAGGATGAACGGCTGCCT GACTGAAACAAAATGTGCCTCCTTCTATCTATGTCTCAACATGTCACGAT TTTTTGCTGCTATAGGACGATATTATTTGGACTGCGGTTGGGGCAGGATT ATTTGGGCTCTTCATGGCCTCTACCTTCCCGCTTGCTATGTCACTGCTGC CAGCCGCAGGCAAGTGTTCTACACAACACGACGGAATTATAAACGCTCGA GTCTAGAAAAAAACAACGATCGTCTAGTGAATTTGTGAACTTGTTTGGCC AATTACACTTGCCGATTCCAAATCCAGCATGGCCAGGTCTGTCTGTAGGA TATAATGTCGGCATGAACATCGCGAGGAAGATGGCATTAATGGTCGTCGT CAGTGATATTCTGGCAGAACACAAGAAGAGTGCCACCACGATCGTTCAAA TGTCCTCCCGGCATAACCGACATGGAGCTATGTACACATACTTTCCCAAC CCCGTTGAAATTCTACCCTCGGCGGATGCAGGGTACACTCTTTCTGCCAA GAATTCCTCGCGCATGGTCATCGGCGCCGCGCTTGGTGAAATGCTAGTGC CTGCCCTCATCGCTGCCCTTCTAGGCCCCGCTGACGGGGGGCGACCAAGC GTACTGTACGCGTCATGTATGGTGATATCAATGTTTCTGATGGTTTTGTA TTACGCGTGGTGCAGTCTCATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig49563:2336..3757-

>mRNA_H-elongata_contig49563.12151.1 ID=mRNA_H-elongata_contig49563.12151.1|Name=mRNA_H-elongata_contig49563.12151.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig49563:2336..3757- (Himanthalia elongata Himel1 dioecious)
AAATCCCCAACGTCGCTTGAAGAAGGAGGGGGGGGGGGGCTACCGACGCT
TTCCCTCATTGCCCTCCTAGTGACTTTTTGTTTTCTTTACGTCGGAGCCG
AGATCGGATTCGGCGCTTGGATCGCAGTGGTGGTGCTGCGCGAAGATCTG
GCAGGAGAAGCGGGCGCTGCATCTATGGCCAGAAATCCCCAACGTCGCTT
GAAGAAGGAGGGGGGGGGGGGCTACCGACGCTTTCCCTCATTGCCCTCCT
AGTGACTTTTTGTTTTCTTTACGTCGGAGCCGAGATCGGATTCGGCGCTT
GGATCGCAGTGGTGGTGCTGCGCGAAGATCTGGCAGGAGAAGCGGGCGCT
GCATCTATGGCCAGCCTATTTTGGACAGGCATGATGGCAGGGAGGTTACT
CGCTATTCCGCTGGCCGTTCGTTTCTCCGCCGACTGTCTCCTGTGGGCGA
ATCTTATCGGGGCTGTTGTGTCTTCCTCGCTCCTGTTAGCTCCTATTTTG
GACAGGCATGATGGCAGGGAGGTTACTCGCTATTCCGCTGGCCGTTCGTT
TCTCCGCCGACTGTCTCCTGTGGGCGAATCTTATCGGGGCTGTTGTGTCT
TCCTCGCTCCTGTTAGCTGACGATATTATTTGGACTGCGGTTGGGGCAGG
ATTATTTGGGCTCTTCATGGCCTCTACCTTCCCGCTTGCTATGTCACTGC
TGCCAGCCGCAGGCAAGTGACGATATTATTTGGACTGCGGTTGGGGCAGG
ATTATTTGGGCTCTTCATGGCCTCTACCTTCCCGCTTGCTATGTCACTGC
TGCCAGCCGCAGGCAAGTGGTACACTCTTTCTGCCAAGAATTCCTCGCGC
ATGGTCATCGGCGCCGCGCTTGGTGAAATGCTAGTGCCTGCCCTCATCGC
TGCCCTTCTAGGCCCCGCTGACGGGGGGCGACCAAGCGTACTGTACGCGT
CATGTATGGTGATATCAATGTTTCTGATGGTTTTGTATTACGCGTGGTGC
AGTCTCATTGGTACACTCTTTCTGCCAAGAATTCCTCGCGCATGGTCATC
GGCGCCGCGCTTGGTGAAATGCTAGTGCCTGCCCTCATCGCTGCCCTTCT
AGGCCCCGCTGACGGGGGGCGACCAAGCGTACTGTACGCGTCATGTATGG
TGATATCAATGTTTCTGATGGTTTTGTATTACGCGTGGTGCAGTCTCATT
back to top