mRNA_H-elongata_contig49543.12145.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49543.12145.1
Unique NamemRNA_H-elongata_contig49543.12145.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49543.12145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49543contigH-elongata_contig49543:500..863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size366
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.8033695-UTR-H-elongata_contig49543:499..5511622930814.8033695-UTR-H-elongata_contig49543:499..551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49543 500..551 +
1691679581.766914-UTR-H-elongata_contig49543:499..5511691679581.766914-UTR-H-elongata_contig49543:499..551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49543 500..551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.820488-CDS-H-elongata_contig49543:551..8631622930814.820488-CDS-H-elongata_contig49543:551..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49543 552..863 +
1691679581.7761104-CDS-H-elongata_contig49543:551..8631691679581.7761104-CDS-H-elongata_contig49543:551..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49543 552..863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49543.12145.1prot_H-elongata_contig49543.12145.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49543 552..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49543.12145.1

>prot_H-elongata_contig49543.12145.1 ID=prot_H-elongata_contig49543.12145.1|Name=mRNA_H-elongata_contig49543.12145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MILLIQLIHLGSATRLILILSKRYFDCGFYSSSIYFAFVSLPQSSSANHQ
DGCIGPIAIASRCKQEQMKQSTKTSRERGRFLSNSSPQIEKRENDCLAPR
GADA
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mRNA from alignment at H-elongata_contig49543:500..863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49543.12145.1 ID=mRNA_H-elongata_contig49543.12145.1|Name=mRNA_H-elongata_contig49543.12145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=364bp|location=Sequence derived from alignment at H-elongata_contig49543:500..863+ (Himanthalia elongata Himel1 dioecious)
TTACTAAATAAACGTACTGGACAGGAACTTACAGGTGATTTGATTTGTTT
GTATGATACTATTAATACAACTAATACACCTGGGGTCGGCAACGCGACTA
ATACTCATACTAAGTAAAAGGTATTTTGATTGCGGTTTTTATTCTAGTAG
TATTTATTTTGCCTTTGTCTCCCTCCCCCAGTCGTCTTCAGCGAACCATC
AGGACGGGTGCATCGGCCCAATCGCCATAGCTTCAAGGTGCAAACAAGAA
CAAATGAAGCAAAGCACCAAAACTTCCCGAGAACGTGGTCGATTTCTATC
GAATAGCTCCCCGCAAATAGAGAAGCGAGAAAATGATTGCTTAGCCCCGC
GTGGGGCGGACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig49543:500..863+

>mRNA_H-elongata_contig49543.12145.1 ID=mRNA_H-elongata_contig49543.12145.1|Name=mRNA_H-elongata_contig49543.12145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig49543:500..863+ (Himanthalia elongata Himel1 dioecious)
ATGATACTATTAATACAACTAATACACCTGGGGTCGGCAACGCGACTAAT
ACTCATACTAAGTAAAAGGTATTTTGATTGCGGTTTTTATTCTAGTAGTA
TTTATTTTGCCTTTGTCTCCCTCCCCCAGTCGTCTTCAGCGAACCATCAG
GACGGGTGCATCGGCCCAATCGCCATAGCTTCAAGGTGCAAACAAGAACA
AATGAAGCAAAGCACCAAAACTTCCCGAGAACGTGGTCGATTTCTATCGA
ATAGCTCCCCGCAAATAGAGAAGCGAGAAAATGATTGCTTAGCCCCGCGT
GGGGCGGACGCGATGATACTATTAATACAACTAATACACCTGGGGTCGGC
AACGCGACTAATACTCATACTAAGTAAAAGGTATTTTGATTGCGGTTTTT
ATTCTAGTAGTATTTATTTTGCCTTTGTCTCCCTCCCCCAGTCGTCTTCA
GCGAACCATCAGGACGGGTGCATCGGCCCAATCGCCATAGCTTCAAGGTG
CAAACAAGAACAAATGAAGCAAAGCACCAAAACTTCCCGAGAACGTGGTC
GATTTCTATCGAATAGCTCCCCGCAAATAGAGAAGCGAGAAAATGATTGC
TTAGCCCCGCGTGGGGCGGACGCG
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