mRNA_H-elongata_contig49515.12142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49515.12142.1
Unique NamemRNA_H-elongata_contig49515.12142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49515.12142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49515contigH-elongata_contig49515:863..3015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1478
Cds size1476
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49515.12142.1prot_H-elongata_contig49515.12142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49515 865..3015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.474835-CDS-H-elongata_contig49515:864..14391622930814.474835-CDS-H-elongata_contig49515:864..1439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49515 865..1439 -
1691679581.6864123-CDS-H-elongata_contig49515:864..14391691679581.6864123-CDS-H-elongata_contig49515:864..1439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49515 865..1439 -
1622930814.494441-CDS-H-elongata_contig49515:1768..20481622930814.494441-CDS-H-elongata_contig49515:1768..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49515 1769..2048 -
1691679581.6981144-CDS-H-elongata_contig49515:1768..20481691679581.6981144-CDS-H-elongata_contig49515:1768..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49515 1769..2048 -
1622930814.512563-CDS-H-elongata_contig49515:2394..30151622930814.512563-CDS-H-elongata_contig49515:2394..3015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49515 2395..3015 -
1691679581.710342-CDS-H-elongata_contig49515:2394..30151691679581.710342-CDS-H-elongata_contig49515:2394..3015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49515 2395..3015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49515.12142.1

>prot_H-elongata_contig49515.12142.1 ID=prot_H-elongata_contig49515.12142.1|Name=mRNA_H-elongata_contig49515.12142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=492bp
AEQDKSEVGEVTERVTEERTADAPPPAAPAKSDPVPEVPGEADPDADDPS
PKDSPTGERDVPTEGIDTDAATSVPTAADAESATESAAEETVADVSEGAE
VAVADVAPASISETTGPDVAVKAEDAASGAVEGSVEDDAIPETKTSAPIP
APAPVVAAVTAPEVEASKPKVVGVILPEAEVTKVNEVTKVKEAAPDLTAA
VVSKAVETPATKPDEPTVNALPAPTVNEEMKEMQPRLPSVASMVAQIEAA
QEKTVQSISVPEEAVILAEIPVVASKTPVVAAETLAEVADAPTAVYGAKP
ASAVKVEPPAVVIKTHDVTSAANVTVKTAAAELATPVVPAAAETAVGDAP
KKVEGVAAVVTPEVEVKVPEGVAAGKPDVAVETPAVAVERTVVIGATPEV
AAKTLAVPADIPAVTAEMPDVTSETPKIPPKTPTGTAEMPAVLEESSAMA
TKMPTVATEAPAMDAEVPDLTAATPATPAETRDVATKTPEAL
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mRNA from alignment at H-elongata_contig49515:863..3015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49515.12142.1 ID=mRNA_H-elongata_contig49515.12142.1|Name=mRNA_H-elongata_contig49515.12142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2153bp|location=Sequence derived from alignment at H-elongata_contig49515:863..3015- (Himanthalia elongata Himel1 dioecious)
GCGGAGCAAGATAAATCCGAGGTGGGTGAGGTCACGGAGAGAGTCACAGA
GGAACGTACCGCCGACGCTCCACCGCCAGCCGCGCCGGCAAAATCTGATC
CGGTTCCCGAGGTCCCTGGCGAAGCGGATCCGGACGCCGACGATCCTTCT
CCAAAGGATTCGCCTACAGGAGAACGAGACGTGCCCACGGAGGGAATCGA
TACTGACGCTGCCACTTCGGTTCCTACAGCAGCTGACGCTGAATCTGCTA
CCGAGAGCGCCGCGGAGGAAACAGTGGCTGACGTCTCCGAAGGCGCCGAA
GTTGCGGTCGCCGACGTCGCTCCCGCTTCCATTTCCGAAACGACCGGGCC
TGACGTGGCGGTGAAGGCAGAGGACGCTGCTTCTGGTGCCGTCGAAGGCT
CAGTCGAGGACGACGCCATCCCCGAGACGAAGACGAGTGCGCCCATCCCT
GCGCCGGCGCCGGTGGTCGCGGCTGTGACAGCGCCTGAGGTCGAAGCTTC
CAAACCCAAGGTTGTTGGGGTGATCTTGCCGGAGGCCGAGGTAACAAAAG
TTAACGAGGTGACCAAGGTCAAGGAGGCAGCGCCGGATTTAACTGCGGCT
GTCGTGTCTAAGGCGGTCGAGGTGAGCGCGTCTCGAATGGGCGTACAAAT
ACAGTTAAGGGGGGAGCCAAACGAAGCCTTTCTTGAAGACATGCCCCTGT
TGTGTTTCATCTTGTACACGGTATGCTTTTATGATGCTGCCGCGTGCCTT
TCTCTCGCGCCTTTCTCTCGCGCACCACTCGAAAAAAAAATAGATTCACT
AAACCGCATTGCGGTTTCGGGGTTTTATTCCCTCCCCTAGAAGCTCAATA
GCGATCACTAGTCGTGGTGGGCCCTTGCTTCTTTTTCACCGTTCTTCAAA
TACCCTCACGCGCTGCTGTTTCGTCCACCCGTGGTCTGGTGCGCGTTATG
CGGCGGGTCTTACGAAGACCCCGGCCACGAAGCCGGATGAGCCGACTGTG
AACGCTCTGCCGGCGCCGACAGTAAACGAGGAGATGAAGGAGATGCAACC
CAGACTTCCGTCCGTAGCGAGCATGGTGGCCCAGATCGAGGCCGCGCAGG
AGAAGACTGTACAGTCCATATCGGTGCCGGAGGAGGCTGTTATTCTTGCC
GAGATCCCCGTCGTTGCTTCCAAGACCCCCGTCGTTGCTGCCGAGACACT
CGCCGAGGTTGCCGATGCACCCACAGCCGTCTACGGTGCAAAGCCCGGTG
AGCTAAGTGTCCATGAGGTGATGGTACGATTGATCATGCAACGTGGCTTC
GGGCCGTCGGACTGTGCTACTCACAGCCGCGTGCCCCTTCACTCGCAGTT
GATTCGTGTCGCGGGAAACGGCCGGCGAGGCGAGAAGATGGGATGACACG
ACAGAAGTTTTGATGATATAGCGCGAAAGCGAGGCATAAAAATGCGCCAA
CCTGTTCCCCCCCCCCCCCCCACAAACCTGAGCAACCGTAAGTGCTGCGT
GATTCCTGTTGAACCATGCATTTGGGTTAGAAACCTCGCTCGCCATCGTT
TGCCCTACTTTGTAAAAACGGAACAGCCTCTGCGGTGAAGGTAGAGCCCC
CTGCTGTGGTGATCAAGACGCATGATGTCACCAGCGCCGCCAACGTGACT
GTGAAAACGGCAGCGGCAGAACTCGCTACGCCAGTGGTCCCCGCAGCTGC
CGAGACCGCCGTGGGTGACGCGCCGAAGAAAGTCGAAGGTGTTGCAGCCG
TGGTCACGCCGGAGGTCGAAGTAAAAGTACCCGAGGGCGTTGCGGCGGGA
AAGCCTGACGTGGCCGTCGAGACGCCTGCTGTGGCTGTCGAGAGAACCGT
TGTGATCGGCGCGACGCCCGAAGTCGCTGCCAAGACGCTCGCTGTGCCTG
CCGATATACCCGCTGTTACTGCCGAGATGCCCGATGTAACTTCCGAGACG
CCCAAAATCCCTCCCAAGACACCCACTGGAACTGCCGAGATGCCCGCTGT
GCTTGAGGAGTCGTCCGCTATGGCTACGAAGATGCCTACTGTGGCTACTG
AGGCGCCAGCTATGGATGCTGAAGTTCCCGACTTGACAGCCGCGACCCCT
GCTACACCTGCTGAGACGCGCGATGTGGCTACCAAGACGCCTGAAGCTCT
TGT
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Coding sequence (CDS) from alignment at H-elongata_contig49515:863..3015-

>mRNA_H-elongata_contig49515.12142.1 ID=mRNA_H-elongata_contig49515.12142.1|Name=mRNA_H-elongata_contig49515.12142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2952bp|location=Sequence derived from alignment at H-elongata_contig49515:863..3015- (Himanthalia elongata Himel1 dioecious)
GCGGAGCAAGATAAATCCGAGGTGGGTGAGGTCACGGAGAGAGTCACAGA
GGAACGTACCGCCGACGCTCCACCGCCAGCCGCGCCGGCAAAATCTGATC
CGGTTCCCGAGGTCCCTGGCGAAGCGGATCCGGACGCCGACGATCCTTCT
CCAAAGGATTCGCCTACAGGAGAACGAGACGTGCCCACGGAGGGAATCGA
TACTGACGCTGCCACTTCGGTTCCTACAGCAGCTGACGCTGAATCTGCTA
CCGAGAGCGCCGCGGAGGAAACAGTGGCTGACGTCTCCGAAGGCGCCGAA
GTTGCGGTCGCCGACGTCGCTCCCGCTTCCATTTCCGAAACGACCGGGCC
TGACGTGGCGGTGAAGGCAGAGGACGCTGCTTCTGGTGCCGTCGAAGGCT
CAGTCGAGGACGACGCCATCCCCGAGACGAAGACGAGTGCGCCCATCCCT
GCGCCGGCGCCGGTGGTCGCGGCTGTGACAGCGCCTGAGGTCGAAGCTTC
CAAACCCAAGGTTGTTGGGGTGATCTTGCCGGAGGCCGAGGTAACAAAAG
TTAACGAGGTGACCAAGGTCAAGGAGGCAGCGCCGGATTTAACTGCGGCT
GTCGTGTCTAAGGCGGTCGAGGCGGAGCAAGATAAATCCGAGGTGGGTGA
GGTCACGGAGAGAGTCACAGAGGAACGTACCGCCGACGCTCCACCGCCAG
CCGCGCCGGCAAAATCTGATCCGGTTCCCGAGGTCCCTGGCGAAGCGGAT
CCGGACGCCGACGATCCTTCTCCAAAGGATTCGCCTACAGGAGAACGAGA
CGTGCCCACGGAGGGAATCGATACTGACGCTGCCACTTCGGTTCCTACAG
CAGCTGACGCTGAATCTGCTACCGAGAGCGCCGCGGAGGAAACAGTGGCT
GACGTCTCCGAAGGCGCCGAAGTTGCGGTCGCCGACGTCGCTCCCGCTTC
CATTTCCGAAACGACCGGGCCTGACGTGGCGGTGAAGGCAGAGGACGCTG
CTTCTGGTGCCGTCGAAGGCTCAGTCGAGGACGACGCCATCCCCGAGACG
AAGACGAGTGCGCCCATCCCTGCGCCGGCGCCGGTGGTCGCGGCTGTGAC
AGCGCCTGAGGTCGAAGCTTCCAAACCCAAGGTTGTTGGGGTGATCTTGC
CGGAGGCCGAGGTAACAAAAGTTAACGAGGTGACCAAGGTCAAGGAGGCA
GCGCCGGATTTAACTGCGGCTGTCGTGTCTAAGGCGGTCGAGACCCCGGC
CACGAAGCCGGATGAGCCGACTGTGAACGCTCTGCCGGCGCCGACAGTAA
ACGAGGAGATGAAGGAGATGCAACCCAGACTTCCGTCCGTAGCGAGCATG
GTGGCCCAGATCGAGGCCGCGCAGGAGAAGACTGTACAGTCCATATCGGT
GCCGGAGGAGGCTGTTATTCTTGCCGAGATCCCCGTCGTTGCTTCCAAGA
CCCCCGTCGTTGCTGCCGAGACACTCGCCGAGGTTGCCGATGCACCCACA
GCCGTCTACGGTGCAAAGCCCGACCCCGGCCACGAAGCCGGATGAGCCGA
CTGTGAACGCTCTGCCGGCGCCGACAGTAAACGAGGAGATGAAGGAGATG
CAACCCAGACTTCCGTCCGTAGCGAGCATGGTGGCCCAGATCGAGGCCGC
GCAGGAGAAGACTGTACAGTCCATATCGGTGCCGGAGGAGGCTGTTATTC
TTGCCGAGATCCCCGTCGTTGCTTCCAAGACCCCCGTCGTTGCTGCCGAG
ACACTCGCCGAGGTTGCCGATGCACCCACAGCCGTCTACGGTGCAAAGCC
CGCCTCTGCGGTGAAGGTAGAGCCCCCTGCTGTGGTGATCAAGACGCATG
ATGTCACCAGCGCCGCCAACGTGACTGTGAAAACGGCAGCGGCAGAACTC
GCTACGCCAGTGGTCCCCGCAGCTGCCGAGACCGCCGTGGGTGACGCGCC
GAAGAAAGTCGAAGGTGTTGCAGCCGTGGTCACGCCGGAGGTCGAAGTAA
AAGTACCCGAGGGCGTTGCGGCGGGAAAGCCTGACGTGGCCGTCGAGACG
CCTGCTGTGGCTGTCGAGAGAACCGTTGTGATCGGCGCGACGCCCGAAGT
CGCTGCCAAGACGCTCGCTGTGCCTGCCGATATACCCGCTGTTACTGCCG
AGATGCCCGATGTAACTTCCGAGACGCCCAAAATCCCTCCCAAGACACCC
ACTGGAACTGCCGAGATGCCCGCTGTGCTTGAGGAGTCGTCCGCTATGGC
TACGAAGATGCCTACTGTGGCTACTGAGGCGCCAGCTATGGATGCTGAAG
TTCCCGACTTGACAGCCGCGACCCCTGCTACACCTGCTGAGACGCGCGAT
GTGGCTACCAAGACGCCTGAAGCTCTTCCTCTGCGGTGAAGGTAGAGCCC
CCTGCTGTGGTGATCAAGACGCATGATGTCACCAGCGCCGCCAACGTGAC
TGTGAAAACGGCAGCGGCAGAACTCGCTACGCCAGTGGTCCCCGCAGCTG
CCGAGACCGCCGTGGGTGACGCGCCGAAGAAAGTCGAAGGTGTTGCAGCC
GTGGTCACGCCGGAGGTCGAAGTAAAAGTACCCGAGGGCGTTGCGGCGGG
AAAGCCTGACGTGGCCGTCGAGACGCCTGCTGTGGCTGTCGAGAGAACCG
TTGTGATCGGCGCGACGCCCGAAGTCGCTGCCAAGACGCTCGCTGTGCCT
GCCGATATACCCGCTGTTACTGCCGAGATGCCCGATGTAACTTCCGAGAC
GCCCAAAATCCCTCCCAAGACACCCACTGGAACTGCCGAGATGCCCGCTG
TGCTTGAGGAGTCGTCCGCTATGGCTACGAAGATGCCTACTGTGGCTACT
GAGGCGCCAGCTATGGATGCTGAAGTTCCCGACTTGACAGCCGCGACCCC
TGCTACACCTGCTGAGACGCGCGATGTGGCTACCAAGACGCCTGAAGCTC
TT
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