mRNA_H-elongata_contig49416.12131.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49416.12131.1
Unique NamemRNA_H-elongata_contig49416.12131.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: D8LNL4_ECTSI (Mitogen-activated protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNL4_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 1.160e-119
Identity = 177/220 (80.45%), Postives = 192/220 (87.27%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQDDRENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFEDVLYYHAECRSLIQPSFVAPTAATTPV 681
            L  NCDLKLCDFGLSRGV D+ E  DLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLI SLIGKP+E D+WFVTNPRARRFMLGLPDT+  +LG KFPD N DA+ LLSKML +DP  RI+VEQALEHPYL+SLH+ A E +A+S VDW+ IE VELTKHNLRLLIFEDVL+YH ECR LIQP+  A TAATTPV
Sbjct:  271 LNANCDLKLCDFGLSRGVHDEHETGDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLITSLIGKPTESDIWFVTNPRARRFMLGLPDTSPVNLGVKFPDVNADAVDLLSKMLILDPNRRISVEQALEHPYLSSLHDDALEPLAESHVDWQCIEAVELTKHNLRLLIFEDVLHYHPECRGLIQPTLDAATAATTPV 490          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: A0A835Z2Y5_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y5_9STRA)

HSP 1 Score: 325 bits (832), Expect = 9.620e-106
Identity = 159/226 (70.35%), Postives = 177/226 (78.32%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQDDRENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFEDVLYYHAECRSLIQPSFVAPTAATTPVPLGNPY 699
            L  NCDLKLCDFGLSRGV  + +  DLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLF GNDYIHQLKLI  LIGKP+E DLWFV+NPRARRFMLGLPDTA ADL  +FP+A+ D I LLS+ML +D A RI+V  AL HPYLASLH+A  E +ADS V+W+ IEEVELTK NL+LLIF DVL+YH EC   +  + V P           PY
Sbjct:  264 LNANCDLKLCDFGLSRGVTGEHDTVDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFPGNDYIHQLKLITKLIGKPAEADLWFVSNPRARRFMLGLPDTAPADLAARFPEASADGIALLSRMLTLDSAKRISVADALAHPYLASLHDATLEPLADSAVNWRDIEEVELTKRNLQLLIFNDVLHYHPECIDQLANANVLPLPTPPNTSPPKPY 489          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: A0A6V1P443_HETAK (Mitogen-activated protein kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P443_HETAK)

HSP 1 Score: 290 bits (741), Expect = 2.910e-92
Identity = 139/205 (67.80%), Postives = 161/205 (78.54%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQDDRE---NCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFEDVLYYHAEC 627
            L  NCDLKLCDFGLSRG+ D+     N DLTEYVVTRWYRAPEIMLSVQ+Y+ AIDVWS+GCIF EMLGRKPLF GNDYIHQLKLI  ++G P+E++L +V NPRA+RFMLGLP T   DL  KFPDAN DA+ LLSKML +DP+ RI V + LEHPYLASLH+   E  AD+ V+W  IE  ELTK NL+ LIFEDV ++H EC
Sbjct:  265 LNANCDLKLCDFGLSRGLNDEETPAANGDLTEYVVTRWYRAPEIMLSVQDYSRAIDVWSIGCIFAEMLGRKPLFPGNDYIHQLKLITKVVGTPTEDELGYVENPRAKRFMLGLPPTPRVDLSTKFPDANADALDLLSKMLILDPSKRINVNECLEHPYLASLHDETLEPTADTNVEWDDIETCELTKKNLQRLIFEDVCHFHPEC 469          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: D8LF66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF66_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 1.600e-81
Identity = 141/268 (52.61%), Postives = 183/268 (68.28%), Query Frame = 1
Query:    1 VRLRRNALAQNCDLKLCDFGLSRGVQDDRENCDLT--EYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIE-------------EVELTKHNLRLLIFEDVLYYHAECRSLIQPSF-VAPTAATTPVPLGNPYLPANNTTRADKGGESTGVA 756
            +R  R  L  NCDLK+ DF LSRG Q +    DL     ++T+WY APEI+L+ Q Y+E++D+WSVGCIF EML R+PLF G D+I  L  I++LIGKP+E DLWFVTNPRA+R ML LPD+  ++LG +FP A+ DA+ LLS+ML +DP  RI+ E+ALEHPYLA LH+ ++E IA+ PVD K IE             +VELTKHNLR LI EDVL++H EC  LIQP+  VA  AA TPV  G+    +++    D  G S+G+A
Sbjct:  256 LRPSRVMLNANCDLKISDFELSRGAQSEHNTADLPFLSEIMTQWYCAPEILLAAQIYDESVDLWSVGCIFAEMLRRRPLFVGLDHIGVLTGISALIGKPTEPDLWFVTNPRAKRCMLALPDSPPSNLGVEFPTASSDAVDLLSRMLVLDPNERISAEEALEHPYLAELHDVSSEPIAEIPVDVKPIEAFKFAPSTSCRSPKVELTKHNLRSLILEDVLHFHPECEDLIQPTLAVAGEAAATPVSDGDGSRSSSSPRSNDARGSSSGLA 523          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: W7U818_9STRA (Mitogen-activated protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U818_9STRA)

HSP 1 Score: 263 bits (673), Expect = 9.500e-81
Identity = 134/218 (61.47%), Postives = 159/218 (72.94%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQD--DRENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLP----DTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFEDVLYYHAECRSLIQPSFVA 657
            L  NCDLK+CDFGLSRGV     +E  DLTEYVVTRWYRAPEIMLS   Y  AIDVW+VGCIFGEMLGRKPLF GNDYIHQLKLI  L+G PS E+L FVTN +ARRFML LP     +  ++L  K+PDA+P+A+ LL KML IDPA RITV +ALE PYLASLH+   E +ADS V W  IE  EL+K NL+  I ED++ +H E +  ++   +A
Sbjct:  301 LNSNCDLKICDFGLSRGVMPVGTQEASDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKLVGTPSAEELAFVTNHKARRFMLNLPKEPQSSLPSNLKSKYPDASPEALSLLRKMLVIDPAKRITVAEALEQPYLASLHDPVVETMADSDVHWGDIESCELSKVNLQRQILEDMIRFHPEAKPFLRDRRIA 518          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: A0A4D9D8Z4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8Z4_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.490e-77
Identity = 134/218 (61.47%), Postives = 159/218 (72.94%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQD--DRENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLP----DTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFEDVLYYHAECRSLIQPSFVA 657
            L  NCDLK+CDFGLSRGV     +E  DLTEYVVTRWYRAPEIMLS   Y  AIDVW+VGCIFGEMLGRKPLF GNDYIHQLKLI  L+G PS E+L FVTN +ARRFML LP     +  ++L  K+PDA+P+A+ LL KML IDPA RITV +ALE PYLASLH+   E +ADS V W  IE  EL+K NL+  I ED++ +H E +  ++   +A
Sbjct:  317 LNSNCDLKICDFGLSRGVMPVGTQEASDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKLVGTPSAEELVFVTNHKARRFMLNLPKESQSSLPSNLKSKYPDASPEALSLLRKMLVIDPAKRITVAEALEQPYLASLHDPVVETMADSDVHWGDIESCELSKVNLQRQILEDMIRFHPEAKPFLRDRRIA 534          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: A0A7S2CTH5_9STRA (Mitogen-activated protein kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTH5_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.350e-77
Identity = 120/196 (61.22%), Postives = 143/196 (72.96%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQDDR--ENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFED 603
            L  NCDLKLCDFGLSRG+ +       +LTEYVVTRWYRAPEIMLS Q+Y+ AIDVWSVGCIFGEML RKP+F G+DYIHQLKLI  L+G P+E +LWFVTN +A RF+L LP     DL   FP+A  + + LLSKML +DPA RI+VE AL HPYLA + +   EA+A  PVDW  +E  EL + NL  L+ ED
Sbjct:  148 LNANCDLKLCDFGLSRGLLEGEGTSGANLTEYVVTRWYRAPEIMLSCQDYSCAIDVWSVGCIFGEMLARKPMFPGSDYIHQLKLIMKLVGTPTESELWFVTNQKANRFVLSLPKYDKEDLSKSFPNAEREGLDLLSKMLLLDPARRISVEDALAHPYLAEVRDVDCEAVAPGPVDWGDVETCELNRDNLMRLLVED 343          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: A0A8K1CNY7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNY7_PYTOL)

HSP 1 Score: 239 bits (610), Expect = 2.850e-73
Identity = 117/201 (58.21%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQDDRENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFEDVLYYHAE 624
            L  NCDLK+CDFGL+RGV+ D EN DLTEYVVTRWYRAPEIMLS + Y +AID+WS GCIF E+LGRKPLF G+DYIHQL++I   +G P+E++L FVT+ +ARRFM   P          FP A P AI LL KML  DPA RI+VE ALEHPYL SLH    E +ADS   +   E+ EL K  L+ LI E++  +H E
Sbjct:  216 LNSNCDLKVCDFGLARGVEPDEENMDLTEYVVTRWYRAPEIMLSTKEYTKAIDIWSTGCIFAELLGRKPLFPGDDYIHQLQIICEKLGTPTEDELHFVTSEKARRFMKNQPMQPGVPFARVFPTAKPAAIDLLEKMLVFDPAKRISVEDALEHPYLESLHNVEDEPVADSAFSF-DFEKEELHKERLQELILEEITKFHPE 415          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: A0A662XYQ4_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYQ4_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.460e-72
Identity = 114/193 (59.07%), Postives = 137/193 (70.98%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQDDRENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFE 600
            L  NCDLK+CDFGLSRGV  + +N +LTEYVVTRWYRAPEIMLS + Y +AID+WS GCIF E+LGR PLF G+DYIHQL++I   IG P EEDL FV + RA+RFM   P          FP A P+AI LL +ML  DPA RI+VE+ALEHPYLASLH    E +ADS   +   E+ +LT+  L+ LIFE
Sbjct:   15 LNSNCDLKVCDFGLSRGVAPEEDNMELTEYVVTRWYRAPEIMLSSREYTKAIDIWSTGCIFAELLGRTPLFPGDDYIHQLQIICDKIGTPREEDLHFVVSERAKRFMRSQPMRPGVPFAKLFPKAAPEAIDLLQRMLVFDPAKRISVEEALEHPYLASLHNLEDEPVADSVFSF-DFEKEDLTEARLKELIFE 206          
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Match: A0A067CUZ6_SAPPC (Mitogen-activated protein kinase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CUZ6_SAPPC)

HSP 1 Score: 235 bits (600), Expect = 2.400e-72
Identity = 113/201 (56.22%), Postives = 145/201 (72.14%), Query Frame = 1
Query:   22 LAQNCDLKLCDFGLSRGVQDDRENCDLTEYVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEEDLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPASRITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFEDVLYYHAE 624
            L  NCDLK+CDFGL+RGV+ D +N +LTEYVVTRWYRAPEIMLS + Y +AID+WS GCIF E+LGRKP+F G+DYIHQL++I   +G PSEE+L FVT+ +ARRFM G P+     L   FP+A  +A+ LL KML  DP  RI+VE+ALEHPYL SLH    E  +  P  +   E+ +LTK  L+ LIF +V ++H +
Sbjct:  176 LNSNCDLKVCDFGLARGVEPDEDNMELTEYVVTRWYRAPEIMLSTKEYTKAIDIWSTGCIFAELLGRKPMFPGDDYIHQLQIICDKLGTPSEEELHFVTSEKARRFMKGQPNKPKIPLDKLFPNAKANALDLLDKMLVFDPTKRISVEEALEHPYLESLHNNDDEPKSTKPFSF-DFEKEQLTKRRLQELIFGEVCHFHPD 375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49416.12131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNL4_ECTSI1.160e-11980.45Mitogen-activated protein kinase n=2 Tax=Ectocarpu... [more]
A0A835Z2Y5_9STRA9.620e-10670.35Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A6V1P443_HETAK2.910e-9267.80Mitogen-activated protein kinase n=1 Tax=Heterosig... [more]
D8LF66_ECTSI1.600e-8152.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7U818_9STRA9.500e-8161.47Mitogen-activated protein kinase n=1 Tax=Nannochlo... [more]
A0A4D9D8Z4_9STRA1.490e-7761.47Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2CTH5_9STRA2.350e-7761.22Mitogen-activated protein kinase n=1 Tax=Florencie... [more]
A0A8K1CNY7_PYTOL2.850e-7358.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XYQ4_9STRA1.460e-7259.07Protein kinase domain-containing protein (Fragment... [more]
A0A067CUZ6_SAPPC2.400e-7256.22Mitogen-activated protein kinase n=3 Tax=Saprolegn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49416contigH-elongata_contig49416:1373..3822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.3
Seed ortholog evalue7.2e-69
Seed eggNOG ortholog2880.D8LF66
KEGG koko:K04371,ko:K14512
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04075,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04075,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
EggNOG free text desc.MAP kinase activity
EggNOG OGsKOG0660@1,KOG0660@2759
EC2.7.11.24
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size756
Cds size756
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49416.12131.1prot_H-elongata_contig49416.12131.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49416 1373..3822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.041424-CDS-H-elongata_contig49416:1372..15701622930813.041424-CDS-H-elongata_contig49416:1372..1570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 1373..1570 -
1691679581.2142336-CDS-H-elongata_contig49416:1372..15701691679581.2142336-CDS-H-elongata_contig49416:1372..1570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 1373..1570 -
1622930813.0614588-CDS-H-elongata_contig49416:2291..25231622930813.0614588-CDS-H-elongata_contig49416:2291..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 2292..2523 -
1691679581.2334435-CDS-H-elongata_contig49416:2291..25231691679581.2334435-CDS-H-elongata_contig49416:2291..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 2292..2523 -
1622930813.0827324-CDS-H-elongata_contig49416:2936..31551622930813.0827324-CDS-H-elongata_contig49416:2936..3155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 2937..3155 -
1691679581.2434402-CDS-H-elongata_contig49416:2936..31551691679581.2434402-CDS-H-elongata_contig49416:2936..3155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 2937..3155 -
1622930813.1019313-CDS-H-elongata_contig49416:3715..38221622930813.1019313-CDS-H-elongata_contig49416:3715..3822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 3716..3822 -
1691679581.2546852-CDS-H-elongata_contig49416:3715..38221691679581.2546852-CDS-H-elongata_contig49416:3715..3822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49416 3716..3822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49416.12131.1

>prot_H-elongata_contig49416.12131.1 ID=prot_H-elongata_contig49416.12131.1|Name=mRNA_H-elongata_contig49416.12131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
VRLRRNALAQNCDLKLCDFGLSRGVQDDRENCDLTEYVVTRWYRAPEIML
SVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLIASLIGKPSEE
DLWFVTNPRARRFMLGLPDTAAADLGHKFPDANPDAIHLLSKMLNIDPAS
RITVEQALEHPYLASLHEAAAEAIADSPVDWKGIEEVELTKHNLRLLIFE
DVLYYHAECRSLIQPSFVAPTAATTPVPLGNPYLPANNTTRADKGGESTG
VA
back to top

mRNA from alignment at H-elongata_contig49416:1373..3822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49416.12131.1 ID=mRNA_H-elongata_contig49416.12131.1|Name=mRNA_H-elongata_contig49416.12131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2450bp|location=Sequence derived from alignment at H-elongata_contig49416:1373..3822- (Himanthalia elongata Himel1 dioecious)
GTGCGATTGCGACGTAATGCGCTTGCCCAGAACTGCGACCTGAAGCTCTG CGACTTCGGGCTTTCGAGGGGAGTTCAGGACGACCGCGAGAACTGCGATC TCACAGAGTAAGCGTTTGTCCCGCCTTAATATATATACATATGTATATAG ATGTGATTTATTTATTTTTTGAGTCGACGTGTTAAGGAGCACAGAACCGT TCGTGGTGATGGCTTTCGAGCCCACTTCGGGTGTGTTGAAATGATCTCCT TGAAAAATTATGTCGGGGACATTTGGCAGTTGGAGTGTAGTGGAGCGATG TAATCAAGACAAGCACCGGCCTTATAGTTGTTTGTCATTGCTGTGCTGTA TGCCGATTAGTTTAATTAGTTCAAAAGGGTGTCTTGCTATACAAAAATCG GTGCACTAGAGCAGGTAGATTGGTAACGAGGGCAGCGCGGAGTGTCGCAT ATAGTCCAAACGGCATGACTATACTCCCGCCGAGGGCATGGTGGAGGAAG AATTCGTCTTGCGCGTTATTCTAGGAGAGCTCATAGCAATGCTGTAGGAC GATGCGCCGCGCACGAAGGCAAAATCCGACTGTTGATAATTGGAGCCGGC TGCTTGCTTCCGCTGCGCGCGGCTGTGTGCTGTGCTGTGTTGTAATGTGA TGGGACGTGGGGTGAAGATACGTCGTTACCCGCTGGTATCGCGCTCCGGA GATCATGCTGTCCGTCCAAAACTATAACGAGGCCATCGACGTCTGGAGTG TGGGTTGTATCTTCGGAGAGATGTTGGGGAGGAAGCCTCTTTTCGCTGGC AACGACTACATCCATCAGCTCAAGCTCATCGCGTCGCTGATCGGGAAGCC GTCTGAGGAGGACCTGTGGTTTGTCACCAATCCGAGGTGGGGACAGGGGG GACACGGCGCAGCGGGAAAGGTTAGGTTACCCTTTTCAAGTACAACACAC GATAGGCTGCGAGAATTAGAGGGTTTCAGATAAACGAATGCTCTGACTCA TGGAACGTTGCTCTACATCTCCATCCTGTTGTACAGTGTTTTCGGGGGTG GGGGGTTTTGGGGGGGGGGGGGGTCTGGTTTTTTGGGGGGGGGGGGGGGG GGGGGGGCGGTGTCGTTCGAATTACGAGACACATATTCGAGAGTCTGGTG ATGGGCGGGAAATTTCACGCTGCAGCACGGAACTTGTATCCTTGTACTTG CATACAGCATGCCGCGTCGCGATTCCACTTTCTTTCACTTCCGGTTTGCC ATTGTTATTTCCTTCCTTTCCTGCCTTTTCTGCCTTTCCTTCCCCGCAGA GCGAGGCGCTTTATGCTCGGCCTGCCAGACACCGCCGCGGCCGACCTCGG GCACAAGTTTCCCGACGCCAATCCCGACGCGATCCACTTGCTATCGAAAA TGCTCAACATTGATCCCGCGAGTCGCATCACCGTGGAGCAGGCCCTCGAG CACCCTTACCTTGCTTCTTTGCACGAGGCGGCAGCTGAGGCGATCGCTGA CAGTCCCGTAGACTGGAAGGGCATAGAAGAGGTAAGGCCGGGTCTTATCG GAATACAAAAAATTAAATTTCCAGCCGATTTAATTAAAATCGGGCTCTGA TTGGTCGAAAGCTAAGTAACGCCTAGCCTTCGTCCAATCAGAGCCCGATT CAAATATAAATCGGCTGGAATTTAAACTTTTGTGATCCGTTAATACCCGC CCTAATATTGTAATGATGATTATTATTGTATTTGGAAGGGAGGTGGGAGG CAGGTCGGATCCTGTGATAGCCATACCCACAGCCTGTTTTATTTGCCGAG TTTAGTTTTAGAGAAGAAATTGCCCTAATTTGGAGGTAAGCATCACTTGC CACTGTCATCCTTTCTGAATGCAATGCCAGACAAGCTGAAGTCGTGTTGG TTCCTTCGATGGCAGGGGTTGAAAGCTTTTGTGATGAGGCCTGGATTGTG CTGACAGTTTGCGGCTTTCCGCACCGCCGAGGACGAGGGTGCTGGACGTT GAGGCAAAGCCGTCGCTGTGTTCTTCGCTATTTATATATTTATTTTTCCC CGCCAAAGCGCCCTCTTGCCTACAGTATACATGATCGCGTCTGTTTACAT ATGGACAAATGAACGGATCCGCGCCACACTCGCGAAATGTTGCTCAAAAC CGCGGATCTTGAGGAAATTGGCGTGAAGATAAATTGATGTGCACGCAGCA ACCACTTTTTGACATTTCATCCGTACAATCATGTATTCCTATATTGATCC AGGTGGAATTGACCAAGCACAACCTGCGCCTCCTCATCTTTGAGGACGTC CTGTATTACCACGCAGAGTGTAGGAGCCTCATACAGCCCAGCTTCGTGGC CCCTACAGCGGCCACGACCCCTGTCCCCCTCGGGAATCCATATCTTCCCG CTAACAACACCACCCGCGCCGATAAAGGGGGCGAATCAACAGGCGTCGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig49416:1373..3822-

>mRNA_H-elongata_contig49416.12131.1 ID=mRNA_H-elongata_contig49416.12131.1|Name=mRNA_H-elongata_contig49416.12131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig49416:1373..3822- (Himanthalia elongata Himel1 dioecious)
GTGCGATTGCGACGTAATGCGCTTGCCCAGAACTGCGACCTGAAGCTCTG
CGACTTCGGGCTTTCGAGGGGAGTTCAGGACGACCGCGAGAACTGCGATC
TCACAGAGTGCGATTGCGACGTAATGCGCTTGCCCAGAACTGCGACCTGA
AGCTCTGCGACTTCGGGCTTTCGAGGGGAGTTCAGGACGACCGCGAGAAC
TGCGATCTCACAGAATACGTCGTTACCCGCTGGTATCGCGCTCCGGAGAT
CATGCTGTCCGTCCAAAACTATAACGAGGCCATCGACGTCTGGAGTGTGG
GTTGTATCTTCGGAGAGATGTTGGGGAGGAAGCCTCTTTTCGCTGGCAAC
GACTACATCCATCAGCTCAAGCTCATCGCGTCGCTGATCGGGAAGCCGTC
TGAGGAGGACCTGTGGTTTGTCACCAATCCGAGATACGTCGTTACCCGCT
GGTATCGCGCTCCGGAGATCATGCTGTCCGTCCAAAACTATAACGAGGCC
ATCGACGTCTGGAGTGTGGGTTGTATCTTCGGAGAGATGTTGGGGAGGAA
GCCTCTTTTCGCTGGCAACGACTACATCCATCAGCTCAAGCTCATCGCGT
CGCTGATCGGGAAGCCGTCTGAGGAGGACCTGTGGTTTGTCACCAATCCG
AGAGCGAGGCGCTTTATGCTCGGCCTGCCAGACACCGCCGCGGCCGACCT
CGGGCACAAGTTTCCCGACGCCAATCCCGACGCGATCCACTTGCTATCGA
AAATGCTCAACATTGATCCCGCGAGTCGCATCACCGTGGAGCAGGCCCTC
GAGCACCCTTACCTTGCTTCTTTGCACGAGGCGGCAGCTGAGGCGATCGC
TGACAGTCCCGTAGACTGGAAGGGCATAGAAGAGAGCGAGGCGCTTTATG
CTCGGCCTGCCAGACACCGCCGCGGCCGACCTCGGGCACAAGTTTCCCGA
CGCCAATCCCGACGCGATCCACTTGCTATCGAAAATGCTCAACATTGATC
CCGCGAGTCGCATCACCGTGGAGCAGGCCCTCGAGCACCCTTACCTTGCT
TCTTTGCACGAGGCGGCAGCTGAGGCGATCGCTGACAGTCCCGTAGACTG
GAAGGGCATAGAAGAGGTGGAATTGACCAAGCACAACCTGCGCCTCCTCA
TCTTTGAGGACGTCCTGTATTACCACGCAGAGTGTAGGAGCCTCATACAG
CCCAGCTTCGTGGCCCCTACAGCGGCCACGACCCCTGTCCCCCTCGGGAA
TCCATATCTTCCCGCTAACAACACCACCCGCGCCGATAAAGGGGGCGAAT
CAACAGGCGTCGCTGTGGAATTGACCAAGCACAACCTGCGCCTCCTCATC
TTTGAGGACGTCCTGTATTACCACGCAGAGTGTAGGAGCCTCATACAGCC
CAGCTTCGTGGCCCCTACAGCGGCCACGACCCCTGTCCCCCTCGGGAATC
CATATCTTCCCGCTAACAACACCACCCGCGCCGATAAAGGGGGCGAATCA
ACAGGCGTCGCT
back to top