mRNA_H-elongata_contig4937.12123.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4937.12123.1
Unique NamemRNA_H-elongata_contig4937.12123.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4937.12123.1 vs. uniprot
Match: A0A6H5KR77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR77_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.610e-5
Identity = 83/290 (28.62%), Postives = 114/290 (39.31%), Query Frame = 2 
Query: 1058 SPLSSSEGLIT-PSLAGIPLPPVTSARQRVNFIGKLPPVSG---DDLVIANQDEADKAAALDGKPANTNLPK-----RATISLYSGQLASETCPVVASPFDSGLLSLLSTTSTQRCTDD-----IGCEDSERGTPGEMTR-------GEFTSGTLLRRRLRLSNEDMSEMEV----------------------RTTPPESPKQHQGQEEENATRRLELEVGDER-------LSEGVHGGCSDIGERFPRSDLEHEIDEGTISTG-SSIGEHIQFEQESDLDDSRGLGDD 1774
            SPL+S  GL +  SLAG+P PP+  ARQR+  +G LPPV G     LV+    +A  A   + K       +      AT         S       SP  SG    +S  +T   T +     +G         G+  R       G F++   ++++                                     +PP SPKQHQGQEEE+A R L   +G +R       ++     G  D+G  F  SD   E+ E  I    SS+GE I FEQES    +   GDD
Sbjct:  532 SPLASPRGLASLSSLAGLPPPPMGGARQRLGLLGALPPVGGRGLPSLVLPGGLKASSAPGQERKDVERKADEGGDGESATGGTMEAGCLSSRTSTPPSPSSSGKKISVSAAATSSATKEGSVSSVGAPTHAPAGEGDDDRDGENDGSGRFSTAGAVKKQXXXXXXXXXXXXALLGLGXXXXXXXXXXXXXXXXXTLSPPGSPKQHQGQEEEDAGRALLEGLGGKRGGGTATNVTLAAPVGGLDVGGYFGGSD--EEVSEAEIDGEVSSVGEDISFEQES----AESGGDD 815
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4937.12123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR77_9PHAE1.610e-528.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4937contigH-elongata_contig4937:6755..9670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2874
Cds size1638
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4937.12123.1prot_H-elongata_contig4937.12123.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4937 6906..8543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.6323254-UTR-H-elongata_contig4937:6754..69051622930811.6323254-UTR-H-elongata_contig4937:6754..6905Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4937 6755..6905 +
1691679580.7268186-UTR-H-elongata_contig4937:6754..69051691679580.7268186-UTR-H-elongata_contig4937:6754..6905Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4937 6755..6905 +
1622930811.662436-UTR-H-elongata_contig4937:8543..95791622930811.662436-UTR-H-elongata_contig4937:8543..9579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4937 8544..9579 +
1691679580.7450938-UTR-H-elongata_contig4937:8543..95791691679580.7450938-UTR-H-elongata_contig4937:8543..9579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4937 8544..9579 +
1622930811.6783593-UTR-H-elongata_contig4937:9621..96701622930811.6783593-UTR-H-elongata_contig4937:9621..9670Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4937 9622..9670 +
1691679580.7630546-UTR-H-elongata_contig4937:9621..96701691679580.7630546-UTR-H-elongata_contig4937:9621..9670Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4937 9622..9670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.648899-CDS-H-elongata_contig4937:6905..85431622930811.648899-CDS-H-elongata_contig4937:6905..8543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 6906..8543 +
1691679580.734697-CDS-H-elongata_contig4937:6905..85431691679580.734697-CDS-H-elongata_contig4937:6905..8543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 6906..8543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4937.12123.1

>prot_H-elongata_contig4937.12123.1 ID=prot_H-elongata_contig4937.12123.1|Name=mRNA_H-elongata_contig4937.12123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=546bp
MEEEAGRKGDTKRGIDVFEANDPAHETHGQSEAPTKKHMEEQLDTYELKN
HVESPGAIATSSSVSSLKHENSLNVEGRDKSQVQDNIPDHDISVGFSGEH
GEDYKKAWAIGANYARSFATKENDAKQTLDAPDEGGTREAAMHDSQAVVT
VGSATRDALDDNGDVVRNTTPVNRTVIPVTEAEGKSRSNVSNTVEGQDKN
EGEGQETIEEEGQEKIEGEGQEKNGEEGQDKNEEEGQFDAEVVAPRTERC
RDQGDDDATPILPPQPPPSIGLGDGLDALGDGDGEYSPTMPSSFAWSRGS
TQSPLSSSEGLITPSLAGIPLPPVTSARQRVNFIGKLPPVSGDDLVIANQ
DEADKAAALDGKPANTNLPKRATISLYSGQLASETCPVVASPFDSGLLSL
LSTTSTQRCTDDIGCEDSERGTPGEMTRGEFTSGTLLRRRLRLSNEDMSE
MEVRTTPPESPKQHQGQEEENATRRLELEVGDERLSEGVHGGCSDIGERF
PRSDLEHEIDEGTISTGSSIGEHIQFEQESDLDDSRGLGDDVLWP*
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mRNA from alignment at H-elongata_contig4937:6755..9670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4937.12123.1 ID=mRNA_H-elongata_contig4937.12123.1|Name=mRNA_H-elongata_contig4937.12123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2916bp|location=Sequence derived from alignment at H-elongata_contig4937:6755..9670+ (Himanthalia elongata Himel1 dioecious)
ACAGGAGAGCGGCGCCAAAACGTCGAGACAAATCCGCCTGCCTGGACCTG
TGGCTCCAAGAAATCTAGCCGACGTTGGAAATTTCCGTCTCCAGAAGGAC
GGAGATGAAGACGATGGAGGTGGATCTATCCCATTCCATCCCATACGGTA
TATGGAAGAAGAAGCCGGACGAAAGGGAGACACGAAGCGTGGAATTGATG
TGTTCGAAGCAAATGACCCCGCTCACGAGACACACGGACAGTCAGAGGCA
CCCACAAAAAAGCATATGGAAGAGCAGCTTGACACGTACGAATTGAAGAA
CCACGTGGAATCTCCGGGCGCCATCGCGACCTCTAGCTCCGTCTCGAGTT
TGAAGCATGAAAACTCCCTTAACGTGGAAGGTCGGGACAAGAGCCAAGTC
CAGGATAATATTCCAGATCATGATATTTCGGTGGGTTTCTCCGGAGAACA
CGGCGAAGACTACAAGAAGGCGTGGGCGATTGGAGCTAATTACGCGCGAA
GCTTCGCGACGAAAGAAAATGATGCTAAGCAGACGTTGGACGCACCCGAT
GAAGGAGGAACGAGGGAAGCGGCGATGCATGACTCGCAAGCCGTCGTCAC
TGTTGGTTCAGCCACAAGAGACGCTTTAGACGATAACGGCGACGTTGTAC
GGAACACTACCCCTGTAAATCGTACCGTAATACCGGTGACTGAAGCTGAG
GGGAAGAGTCGAAGCAACGTCTCTAACACCGTGGAAGGTCAGGACAAGAA
CGAGGGAGAAGGTCAGGAGACGATCGAGGAAGAAGGTCAGGAGAAGATCG
AGGGAGAAGGTCAGGAGAAGAACGGGGAAGAAGGTCAGGACAAGAACGAG
GAAGAAGGACAGTTCGATGCCGAGGTCGTGGCTCCGAGAACAGAACGATG
CCGAGACCAAGGTGATGATGATGCCACACCCATACTTCCGCCGCAGCCAC
CGCCTTCGATTGGCCTTGGTGATGGTTTAGACGCCCTCGGCGATGGTGAC
GGTGAATATTCACCGACGATGCCGTCATCTTTTGCGTGGTCTCGTGGCTC
AACTCAGTCTCCCCTTTCTTCGTCAGAAGGTCTGATCACCCCTTCTCTCG
CGGGAATTCCGCTTCCGCCCGTCACCAGTGCGCGGCAGCGAGTGAATTTT
ATCGGGAAACTACCCCCTGTTAGCGGAGATGATCTAGTAATAGCCAATCA
GGACGAAGCCGACAAAGCTGCTGCATTGGATGGGAAACCGGCAAACACGA
ATTTGCCCAAACGAGCGACCATATCGCTATATTCCGGACAACTAGCCTCG
GAAACTTGCCCCGTTGTCGCCTCGCCATTTGATTCCGGTCTTCTTTCGCT
TCTATCGACCACAAGCACTCAAAGGTGCACAGACGACATCGGCTGTGAAG
ACAGTGAAAGGGGTACACCGGGGGAAATGACAAGGGGAGAGTTTACCAGC
GGAACTTTGCTAAGGAGACGTCTGAGACTATCGAACGAAGATATGTCGGA
GATGGAAGTGAGGACCACTCCTCCCGAAAGCCCGAAACAGCACCAGGGTC
AAGAGGAGGAAAATGCCACCAGGAGATTAGAGTTGGAGGTCGGTGATGAG
CGATTGAGTGAGGGTGTGCATGGGGGCTGCAGCGATATCGGCGAAAGGTT
TCCGCGCTCGGACTTGGAACATGAGATCGACGAAGGAACCATCAGCACTG
GTAGCAGTATCGGCGAGCACATACAGTTCGAGCAGGAGAGTGACTTGGAC
GACAGCCGCGGTCTTGGTGACGATGTGCTTTGGCCATGAAGATTATAAGG
CACTCGTCCAGCCGCAATTCGCGGGATCGCTCAAGGGGTTTACAAATTCG
GCCGGGAAAATGGCAGCCTTACACGAACCGTAACATGTATTTTTCGGTTT
CACCATAGCCGCGCGAATAACTGCAAAACGTCTATTACGTTGTGAGGTCA
GATATACTGCATACCACGGTATTGAAGACCCTTGATGTCACATGGTCCAT
GAAGCTATGCTCCAGCACAGAAGCAAAACGAAATTATGTATGAATGTATT
ATGGTACTGCGTCCGTAAAATAGAAGGGCGAATGCCAAAACGTACTATAT
TTTGATTCGGTGTCGAGGGGTTAGTACTACTATTATTATTACTAGTATTA
CGGTTATTACCAAGCAAGGTACCTACTAGCTATTAGCGGCAATATAATCG
ACATGTTGTTGCTGATCACACATTTAGCAGAAGATCAACCGGATTTGGTT
GCCTTCTGCTCGTGGTCAGCTGAACAGGGTAAATCATTTCCCCCTATCTC
CTTTCGCGCCTGAGAATTTGGTCTCTCGAGACGGGTTCAGCAGTCCCGTC
CCGCGTCAGCCTGCTCATTCTCCCAACCCAGGCTGAATCTGGTTCTTACT
CCCGAGATCCTCTCGATCCTCCCGTTTTTGGCGACGGCGTTCATCGCTAC
CGTCAACCGCCATCGGGTCAATCCCAATTTCATCAGGCCACTCAATTGCG
CACCAATGGCGTTTACCACGGAGAGTCCAGGGGCACCGAGCCAGCAGTCC
TCAAGATAGCTCGAGTAACGGGTGGGAGAAGAGTATTGGAAATAGTACAG
TAGGCATATACTAGGCATTACTACGTAGTACAGTATATAATAGACATGAC
ATGACATGTGGGAGAAAAGTATTGAAAAAAAGAAGAGTATTGAATCGACA
CCTAGTGCGATTTCGGAAATCGAGAGACATCAATATTGTCTACATCCTGC
GCGTTCATCGCCCATATTTCCGAGACGAGACCGAGACGAGACCAGTTACA
AGTGGTGGATATGGAGACGAGACCAGTTACAAGTGGTGGATATGGGTGGA
TATGGAGACGAGACCAGTTACAAGTGGTGGATATGGGACAGCGATATAAT
TCCGCCGATATTCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig4937:6755..9670+

>mRNA_H-elongata_contig4937.12123.1 ID=mRNA_H-elongata_contig4937.12123.1|Name=mRNA_H-elongata_contig4937.12123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3276bp|location=Sequence derived from alignment at H-elongata_contig4937:6755..9670+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAGAAGCCGGACGAAAGGGAGACACGAAGCGTGGAATTGATGT
GTTCGAAGCAAATGACCCCGCTCACGAGACACACGGACAGTCAGAGGCAC
CCACAAAAAAGCATATGGAAGAGCAGCTTGACACGTACGAATTGAAGAAC
CACGTGGAATCTCCGGGCGCCATCGCGACCTCTAGCTCCGTCTCGAGTTT
GAAGCATGAAAACTCCCTTAACGTGGAAGGTCGGGACAAGAGCCAAGTCC
AGGATAATATTCCAGATCATGATATTTCGGTGGGTTTCTCCGGAGAACAC
GGCGAAGACTACAAGAAGGCGTGGGCGATTGGAGCTAATTACGCGCGAAG
CTTCGCGACGAAAGAAAATGATGCTAAGCAGACGTTGGACGCACCCGATG
AAGGAGGAACGAGGGAAGCGGCGATGCATGACTCGCAAGCCGTCGTCACT
GTTGGTTCAGCCACAAGAGACGCTTTAGACGATAACGGCGACGTTGTACG
GAACACTACCCCTGTAAATCGTACCGTAATACCGGTGACTGAAGCTGAGG
GGAAGAGTCGAAGCAACGTCTCTAACACCGTGGAAGGTCAGGACAAGAAC
GAGGGAGAAGGTCAGGAGACGATCGAGGAAGAAGGTCAGGAGAAGATCGA
GGGAGAAGGTCAGGAGAAGAACGGGGAAGAAGGTCAGGACAAGAACGAGG
AAGAAGGACAGTTCGATGCCGAGGTCGTGGCTCCGAGAACAGAACGATGC
CGAGACCAAGGTGATGATGATGCCACACCCATACTTCCGCCGCAGCCACC
GCCTTCGATTGGCCTTGGTGATGGTTTAGACGCCCTCGGCGATGGTGACG
GTGAATATTCACCGACGATGCCGTCATCTTTTGCGTGGTCTCGTGGCTCA
ACTCAGTCTCCCCTTTCTTCGTCAGAAGGTCTGATCACCCCTTCTCTCGC
GGGAATTCCGCTTCCGCCCGTCACCAGTGCGCGGCAGCGAGTGAATTTTA
TCGGGAAACTACCCCCTGTTAGCGGAGATGATCTAGTAATAGCCAATCAG
GACGAAGCCGACAAAGCTGCTGCATTGGATGGGAAACCGGCAAACACGAA
TTTGCCCAAACGAGCGACCATATCGCTATATTCCGGACAACTAGCCTCGG
AAACTTGCCCCGTTGTCGCCTCGCCATTTGATTCCGGTCTTCTTTCGCTT
CTATCGACCACAAGCACTCAAAGGTGCACAGACGACATCGGCTGTGAAGA
CAGTGAAAGGGGTACACCGGGGGAAATGACAAGGGGAGAGTTTACCAGCG
GAACTTTGCTAAGGAGACGTCTGAGACTATCGAACGAAGATATGTCGGAG
ATGGAAGTGAGGACCACTCCTCCCGAAAGCCCGAAACAGCACCAGGGTCA
AGAGGAGGAAAATGCCACCAGGAGATTAGAGTTGGAGGTCGGTGATGAGC
GATTGAGTGAGGGTGTGCATGGGGGCTGCAGCGATATCGGCGAAAGGTTT
CCGCGCTCGGACTTGGAACATGAGATCGACGAAGGAACCATCAGCACTGG
TAGCAGTATCGGCGAGCACATACAGTTCGAGCAGGAGAGTGACTTGGACG
ACAGCCGCGGTCTTGGTGACGATGTGCTTTGGCCATGAATGGAAGAAGAA
GCCGGACGAAAGGGAGACACGAAGCGTGGAATTGATGTGTTCGAAGCAAA
TGACCCCGCTCACGAGACACACGGACAGTCAGAGGCACCCACAAAAAAGC
ATATGGAAGAGCAGCTTGACACGTACGAATTGAAGAACCACGTGGAATCT
CCGGGCGCCATCGCGACCTCTAGCTCCGTCTCGAGTTTGAAGCATGAAAA
CTCCCTTAACGTGGAAGGTCGGGACAAGAGCCAAGTCCAGGATAATATTC
CAGATCATGATATTTCGGTGGGTTTCTCCGGAGAACACGGCGAAGACTAC
AAGAAGGCGTGGGCGATTGGAGCTAATTACGCGCGAAGCTTCGCGACGAA
AGAAAATGATGCTAAGCAGACGTTGGACGCACCCGATGAAGGAGGAACGA
GGGAAGCGGCGATGCATGACTCGCAAGCCGTCGTCACTGTTGGTTCAGCC
ACAAGAGACGCTTTAGACGATAACGGCGACGTTGTACGGAACACTACCCC
TGTAAATCGTACCGTAATACCGGTGACTGAAGCTGAGGGGAAGAGTCGAA
GCAACGTCTCTAACACCGTGGAAGGTCAGGACAAGAACGAGGGAGAAGGT
CAGGAGACGATCGAGGAAGAAGGTCAGGAGAAGATCGAGGGAGAAGGTCA
GGAGAAGAACGGGGAAGAAGGTCAGGACAAGAACGAGGAAGAAGGACAGT
TCGATGCCGAGGTCGTGGCTCCGAGAACAGAACGATGCCGAGACCAAGGT
GATGATGATGCCACACCCATACTTCCGCCGCAGCCACCGCCTTCGATTGG
CCTTGGTGATGGTTTAGACGCCCTCGGCGATGGTGACGGTGAATATTCAC
CGACGATGCCGTCATCTTTTGCGTGGTCTCGTGGCTCAACTCAGTCTCCC
CTTTCTTCGTCAGAAGGTCTGATCACCCCTTCTCTCGCGGGAATTCCGCT
TCCGCCCGTCACCAGTGCGCGGCAGCGAGTGAATTTTATCGGGAAACTAC
CCCCTGTTAGCGGAGATGATCTAGTAATAGCCAATCAGGACGAAGCCGAC
AAAGCTGCTGCATTGGATGGGAAACCGGCAAACACGAATTTGCCCAAACG
AGCGACCATATCGCTATATTCCGGACAACTAGCCTCGGAAACTTGCCCCG
TTGTCGCCTCGCCATTTGATTCCGGTCTTCTTTCGCTTCTATCGACCACA
AGCACTCAAAGGTGCACAGACGACATCGGCTGTGAAGACAGTGAAAGGGG
TACACCGGGGGAAATGACAAGGGGAGAGTTTACCAGCGGAACTTTGCTAA
GGAGACGTCTGAGACTATCGAACGAAGATATGTCGGAGATGGAAGTGAGG
ACCACTCCTCCCGAAAGCCCGAAACAGCACCAGGGTCAAGAGGAGGAAAA
TGCCACCAGGAGATTAGAGTTGGAGGTCGGTGATGAGCGATTGAGTGAGG
GTGTGCATGGGGGCTGCAGCGATATCGGCGAAAGGTTTCCGCGCTCGGAC
TTGGAACATGAGATCGACGAAGGAACCATCAGCACTGGTAGCAGTATCGG
CGAGCACATACAGTTCGAGCAGGAGAGTGACTTGGACGACAGCCGCGGTC
TTGGTGACGATGTGCTTTGGCCATGA
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