mRNA_H-elongata_contig4937.12122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4937.12122.1
Unique NamemRNA_H-elongata_contig4937.12122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4937.12122.1 vs. uniprot
Match: D7FU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU29_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 4.960e-15
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 LGVLEVYVEQLSPSTCDVDGVVHALQEAHPRHLGSDVVSMTQLKRLVARLLQNGKPHLPGQY 189
            + ++EV +EQLSP T DV GVV ALQ+ HP HLG D+VS+ QL+RLV RLL  G+ HLPG+Y
Sbjct:   31 IAIVEVQIEQLSPKTFDVSGVVDALQKKHPCHLGPDMVSVNQLERLVWRLLSEGRAHLPGEY 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4937.12122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU29_ECTSI4.960e-1561.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4937contigH-elongata_contig4937:5966..6707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.5656776-CDS-H-elongata_contig4937:5965..60941622930811.5656776-CDS-H-elongata_contig4937:5965..6094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 5966..6094 +
1691679580.7018783-CDS-H-elongata_contig4937:5965..60941691679580.7018783-CDS-H-elongata_contig4937:5965..6094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 5966..6094 +
1622930811.5835462-CDS-H-elongata_contig4937:6437..67071622930811.5835462-CDS-H-elongata_contig4937:6437..6707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 6438..6707 +
1691679580.7154486-CDS-H-elongata_contig4937:6437..67071691679580.7154486-CDS-H-elongata_contig4937:6437..6707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 6438..6707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4937.12122.1prot_H-elongata_contig4937.12122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4937 5966..6707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4937.12122.1

>prot_H-elongata_contig4937.12122.1 ID=prot_H-elongata_contig4937.12122.1|Name=mRNA_H-elongata_contig4937.12122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
ELGVLEVYVEQLSPSTCDVDGVVHALQEAHPRHLGSDVVSMTQLKRLVAR
LLQNGKPHLPGQYSTSAREKKREAPLEEVRKISADEPLLAKPFILGAEIS
GKNHIGASKLIPAPAPGVYSDFSCRESSSVDGA
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mRNA from alignment at H-elongata_contig4937:5966..6707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4937.12122.1 ID=mRNA_H-elongata_contig4937.12122.1|Name=mRNA_H-elongata_contig4937.12122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at H-elongata_contig4937:5966..6707+ (Himanthalia elongata Himel1 dioecious)
GAATTAGGAGTCCTAGAGGTTTATGTGGAGCAGCTCTCGCCTTCAACGTG
CGATGTGGACGGCGTCGTACATGCCCTCCAGGAGGCACATCCCCGCCATC
TAGGCTCCGACGTGGTGTCTATGACTCAGGTCCGTAAGCACCATTGGAAA
AATGTTCCCGCAAGACTAGACTTCGTCACGAAGCTTTCTCGTGGCAGCAT
GTCTGTTACCGGCACGACAGGCTCTGATAGCTCTGATAGTCTCTCATGTT
AATATTATTAATAGTACTAATAGTGTGACCTGCAGTATGAAGAACAAGAA
GCTGTGCGCGACAAATCTTGGCGCGATCTTCGCTGACGAACTCAAGAATA
GCCGCCATAGCCGCCATAGCCGCCATATCACCTGTAACCCGATACTATAA
ACTATAAATATTACATTTGAGAACCAAATATTGCCAGATGCACGCCGCGC
CCTCGTTTCGACCTCTCGCCAGTTGAAGCGTTTGGTCGCTCGGCTCCTTC
AAAACGGCAAGCCACACTTACCTGGGCAGTACTCGACCAGCGCGAGGGAG
AAGAAGAGGGAGGCACCCTTGGAGGAAGTTCGAAAGATCTCCGCTGACGA
ACCTCTTCTCGCGAAGCCTTTTATTCTCGGGGCGGAGATCAGCGGTAAAA
ACCACATCGGGGCTTCTAAACTGATTCCAGCTCCAGCCCCGGGCGTCTAT
AGTGACTTTTCTTGTCGTGAGTCTTCCAGCGTCGACGGCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig4937:5966..6707+

>mRNA_H-elongata_contig4937.12122.1 ID=mRNA_H-elongata_contig4937.12122.1|Name=mRNA_H-elongata_contig4937.12122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig4937:5966..6707+ (Himanthalia elongata Himel1 dioecious)
GAATTAGGAGTCCTAGAGGTTTATGTGGAGCAGCTCTCGCCTTCAACGTG
CGATGTGGACGGCGTCGTACATGCCCTCCAGGAGGCACATCCCCGCCATC
TAGGCTCCGACGTGGTGTCTATGACTCAGGAATTAGGAGTCCTAGAGGTT
TATGTGGAGCAGCTCTCGCCTTCAACGTGCGATGTGGACGGCGTCGTACA
TGCCCTCCAGGAGGCACATCCCCGCCATCTAGGCTCCGACGTGGTGTCTA
TGACTCAGTTGAAGCGTTTGGTCGCTCGGCTCCTTCAAAACGGCAAGCCA
CACTTACCTGGGCAGTACTCGACCAGCGCGAGGGAGAAGAAGAGGGAGGC
ACCCTTGGAGGAAGTTCGAAAGATCTCCGCTGACGAACCTCTTCTCGCGA
AGCCTTTTATTCTCGGGGCGGAGATCAGCGGTAAAAACCACATCGGGGCT
TCTAAACTGATTCCAGCTCCAGCCCCGGGCGTCTATAGTGACTTTTCTTG
TCGTGAGTCTTCCAGCGTCGACGGCGCCTTGAAGCGTTTGGTCGCTCGGC
TCCTTCAAAACGGCAAGCCACACTTACCTGGGCAGTACTCGACCAGCGCG
AGGGAGAAGAAGAGGGAGGCACCCTTGGAGGAAGTTCGAAAGATCTCCGC
TGACGAACCTCTTCTCGCGAAGCCTTTTATTCTCGGGGCGGAGATCAGCG
GTAAAAACCACATCGGGGCTTCTAAACTGATTCCAGCTCCAGCCCCGGGC
GTCTATAGTGACTTTTCTTGTCGTGAGTCTTCCAGCGTCGACGGCGCC
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