mRNA_H-elongata_contig4937.12121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4937.12121.1
Unique NamemRNA_H-elongata_contig4937.12121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4937.12121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4937contigH-elongata_contig4937:2171..3542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size257
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4937.12121.1prot_H-elongata_contig4937.12121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4937 2171..3542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.485871-CDS-H-elongata_contig4937:2170..23381622930811.485871-CDS-H-elongata_contig4937:2170..2338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 2171..2338 -
1691679580.6538522-CDS-H-elongata_contig4937:2170..23381691679580.6538522-CDS-H-elongata_contig4937:2170..2338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 2171..2338 -
1622930811.5010533-CDS-H-elongata_contig4937:2788..28391622930811.5010533-CDS-H-elongata_contig4937:2788..2839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 2789..2839 -
1691679580.6706412-CDS-H-elongata_contig4937:2788..28391691679580.6706412-CDS-H-elongata_contig4937:2788..2839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 2789..2839 -
1622930811.5182383-CDS-H-elongata_contig4937:3506..35421622930811.5182383-CDS-H-elongata_contig4937:3506..3542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 3507..3542 -
1691679580.6894934-CDS-H-elongata_contig4937:3506..35421691679580.6894934-CDS-H-elongata_contig4937:3506..3542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4937 3507..3542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4937.12121.1

>prot_H-elongata_contig4937.12121.1 ID=prot_H-elongata_contig4937.12121.1|Name=mRNA_H-elongata_contig4937.12121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
ENQKREEAKQAQEKAKKAKKAEEVSRKVQEIEEGEEVNKAVELAALQAAA
RTAEAEQLREGQKHFAAVSLSALSKAFETGVNKAQ
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mRNA from alignment at H-elongata_contig4937:2171..3542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4937.12121.1 ID=mRNA_H-elongata_contig4937.12121.1|Name=mRNA_H-elongata_contig4937.12121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1372bp|location=Sequence derived from alignment at H-elongata_contig4937:2171..3542- (Himanthalia elongata Himel1 dioecious)
GAGAACCAAAAGCGAGAGGAAGCCAAGCAGGCGCAGGTACGGACTCCAAG
AAGTGTCCGTCTTTCTCTTTGCACTTTGCACTCTGCTGTATGTTTGCCGT
CTCGGTCTGACATGTTCTATGTTTGCCGTCTCGGTCTGGCATGTTCTATT
AAGTACTACTATTAGTAATACCAATACAAATTTCATGATTGATACCACGT
ACTGTTGTACGCCAATGTCTCTAGCGTTGGGTGAGCTCTGGCACGTATCG
CCAAAATTCATATCCGCAATTGAATATTTTATCGAATGGAGCCTCGTAGT
CCCACCAAACATGTATTTCATTCGATCCCCATGACTTTTGAGGATGGCCA
ACTAGAGCTAATTATATGAGACATGACACCATTATGACCATCGTTATGAC
CATGATCAAACATCATCACGAAGTAGATCCCAGTAGATCCAAATAAATAT
CGATAATTGAATAAAACTGTGGGACGGGTTATCGATCCATTACGCCATTA
TGCTTAGTGTACCGAACGTCGAGGACTCCAGTAGAGGATTATATTAATAG
TAGAGCTATATTATCTTGTACTATATTGCTCTTCTTGAAATATCTTGAGT
TTTGTTGTATTATCTCGAATTACCCGCAGTGGCCTCACACAAAAACACTC
CACGCGTCGCAAACGTCGATATGGACGGTGGATTCGTTTTTCGATGTTGT
CAGGAGAAGGCTAAGAAGGCTAAGAAGGCGGAGGAGGTGTCTCGAAAGGT
TCAGGTGAAGGAGAAAGTAGTGGGACAAAGTATTGGAACAAGAGACCAAG
TTGAGGGGGAGGGGGAGAGGGTTTCGCGATGGTATAGATTCAGACGACGG
CAGTGAAGAGAGGAGAGATGGTATAGATGGTATAGATGGTATAGATATAG
AGAGATGGTAAAGATATAGAGAGATGGTAAAGAAAGATGGTATAGATTCA
GGCCACAGTAGTAAAGAGGGGAGAGATATGGTATAGATGGTACATATAGT
ACTCTTGGTTAGATCCGTCGACTTGGGTGTCCGCTGTTTCTTGTGATGTT
CGAGCTGTTCGGTTGTTGCTTGGGTTTGATCCCATCCCATCCGATGCGAT
GCGATGCGATCCTTGAGCTGCCCGTACTGCTCTCGTTGACTTTTGATGCG
AATCATGGATGGTGCCAAGTTATTTCTATATCATGTATCCATAAAAAATT
GAAGGAGATAGAAGAAGGCGAGGAAGTGAACAAAGCGGTGGAGCTGGCTG
CCCTTCAGGCAGCGGCGAGGACCGCTGAAGCCGAACAACTGCGAGAGGGG
CAAAAACATTTCGCCGCAGTATCATTATCAGCATTGTCAAAGGCATTCGA
GACAGGAGTCAATAAAGCCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig4937:2171..3542-

>mRNA_H-elongata_contig4937.12121.1 ID=mRNA_H-elongata_contig4937.12121.1|Name=mRNA_H-elongata_contig4937.12121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig4937:2171..3542- (Himanthalia elongata Himel1 dioecious)
GAGAACCAAAAGCGAGAGGAAGCCAAGCAGGCGCAGGAGAACCAAAAGCG
AGAGGAAGCCAAGCAGGCGCAGGAGAAGGCTAAGAAGGCTAAGAAGGCGG
AGGAGGTGTCTCGAAAGGTTCAGGAGAAGGCTAAGAAGGCTAAGAAGGCG
GAGGAGGTGTCTCGAAAGGTTCAGGAGATAGAAGAAGGCGAGGAAGTGAA
CAAAGCGGTGGAGCTGGCTGCCCTTCAGGCAGCGGCGAGGACCGCTGAAG
CCGAACAACTGCGAGAGGGGCAAAAACATTTCGCCGCAGTATCATTATCA
GCATTGTCAAAGGCATTCGAGACAGGAGTCAATAAAGCCCAGGAGATAGA
AGAAGGCGAGGAAGTGAACAAAGCGGTGGAGCTGGCTGCCCTTCAGGCAG
CGGCGAGGACCGCTGAAGCCGAACAACTGCGAGAGGGGCAAAAACATTTC
GCCGCAGTATCATTATCAGCATTGTCAAAGGCATTCGAGACAGGAGTCAA
TAAAGCCCAG
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