mRNA_H-elongata_contig49216.12106.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: A0A6H5JDR1_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDR1_9PHAE) HSP 1 Score: 221 bits (562), Expect = 6.270e-69 Identity = 114/229 (49.78%), Postives = 143/229 (62.45%), Query Frame = 1
Query: 4 ITTCAALGCEEPASQRCSICKSVRYCSRECQRQHWTME-HKETCAGMASRRYSELTGLDPFQAHPSVGRSSVGIVTICDSQVQPDTILPHQLPPVA--GGNGWEPCPVPNILGVPIVMKRISPCQCEICAGGRSPVAPWPQPTMQVATRLAIEAHTGLAPRRWMGSGDNHLGIVAVARIDYHDFGVHDWAILDDYICGPVLDSWGMDPPERDVRLAAVCNTRAYADYVA 681
+ TCAA GC E SQRCS CK+ +YCSRECQR+ W + HK+ C +A +R G +A GRS+VGIV+I D QV + +LP G GWE CPV N+LGVP+ + ++ PC C IC G S + P+P QVATRLAIE H GLAP +W G NHLG VAVAR+D DF V DW +LDDYIC + WGM+P ER L VC+++A+A Y A
Sbjct: 1 MNTCAAPGCMELTSQRCSSCKTAKYCSRECQRRDWIVGGHKDRCRELARQR-----GATDSEAALQ-GRSTVGIVSIFDQQVSNSIMSLEELPTAGAPGAQGWELCPVVNMLGVPLAIMKVCPCACHICLRGNSQI---PEPRNQVATRLAIEPHNGLAPPKWQGGPHNHLGTVAVARMDLRDFTVEDWRVLDDYICNTIFGVWGMEPSERIQLLPRVCSSQAFARYTA 220
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: A0A3M7S325_BRAPC (Ectomycorrhiza-upregulated zf-MYND domain-containing n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7S325_BRAPC) HSP 1 Score: 63.9 bits (154), Expect = 7.670e-9 Identity = 54/216 (25.00%), Postives = 93/216 (43.06%), Query Frame = 1
Query: 31 EEPASQRCSICKSVRYCSRECQRQHWTMEHKETCAGMASRRYSELTGLDPFQAHPSVGRSSVGIVTICDSQVQPDTILPHQLPPVAGGNGWEPCPVPNILGVPIVMKRISPCQCEICAGGRSPVAPWPQPTMQVATRLAIEAHTGLAPRRW-MGSGDNHLGIVAVARIDYHDFGVHDWAILDDYICGPVLDSWGMDPPERDVRLAAVCNTRAYADY 675
+E A RC CKS+ YCS+ECQ+ W HK C A + S IV + +V + ++ P NGW PC + ++G+P+++KR +P QP ++ ++ +GLA W MG G++A A+++ DF V + L YI ++D +G + + + N +++ +Y
Sbjct: 17 QENARFRCGNCKSIWYCSKECQKTDWK-NHKPNCNYDAEKLIS--------------------IVVVNGDEVFDQKVPKFEVDPT---NGWIPCVITEMIGIPVMVKRWAPYT--------------KQPHRELGIFYMVDPVSGLAGTEWQMG-----CGVIAFAQMNKTDFPVQLFWDLYSYIY-TLMDYYGDENFDYEKFKKNQLNYKSFREY 188
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: A0A813J335_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J335_POLGL) HSP 1 Score: 59.7 bits (143), Expect = 4.840e-7 Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 1
Query: 301 WEPCPVPNILGVPIVMKRISPCQC---EICAGGRSPVAPWPQPTMQVATRLAIEAHTGLAPRRWM-----GSGDNHLGIVAVARIDYHDFGVHDWAILDDYIC 585
++P P+P +LGVP++++R+ P E+ ++ A +V+ L + +TG+ P W G L V VAR D F DWA+LDDYIC
Sbjct: 23 FQPAPIPRLLGVPLLVRRLVPTHSAAEEVEMLNKAVAASKAVEVEEVSPWLMADPNTGMPPVEWQDPWQPGGALGPLTEVLVAREDQLPFTAEDWAVLDDYIC 125
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: A0A6J0B4Y6_NEOLC (ankyrin repeat and MYND domain-containing protein 2 n=2 Tax=Diprioninae TaxID=410274 RepID=A0A6J0B4Y6_NEOLC) HSP 1 Score: 58.9 bits (141), Expect = 1.580e-6 Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 4 ITTCAALGCEEPASQRCSICKSVRYCSRECQRQHWTMEHKETCAGMASRRYSELTGLDPFQAHPSV 201
I C G EE A+++CS CK+V+YC RECQR HW M HK++CA + +LT +D Q +V
Sbjct: 334 IQVCVTCG-EEKATKKCSKCKAVQYCDRECQRLHWFM-HKKSCARLGQISSVKLTDIDKAQVANAV 397
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: UPI000626BD24 (ankyrin repeat and MYND domain-containing protein 2 n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000626BD24) HSP 1 Score: 57.8 bits (138), Expect = 3.870e-6 Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 13 CAALGCEEPASQRCSICKSVRYCSRECQRQHWTMEHKETCAGMASRRYSELTGLDPFQAHPSV 201
C G EE A+++CS CK+V+YC RECQR HW M HK++CA + +LT +D Q +V
Sbjct: 337 CVTCG-EEKATKKCSKCKAVQYCDRECQRLHWFM-HKKSCARLGQSSSIKLTDVDRAQVANAV 397
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: A0A4Y9ZBL4_9AGAM (MYND-type domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9ZBL4_9AGAM) HSP 1 Score: 57.8 bits (138), Expect = 3.920e-6 Identity = 55/181 (30.39%), Postives = 74/181 (40.88%), Query Frame = 1
Query: 13 CAALGCEEPASQRCSICKSVRYCSRECQRQHWTMEHKETCAGMASRRYSELTGLDPFQAHPSVGRSSV--GIVTICDS-QVQPDTILPHQLPPVAG-GNGWEPCPVPNILGVPIVM---KRISPCQCEICAGGRSPVAPWPQPTMQVATRLAIEAHTGLAPRRWMGSGDNHLGIVAVARID 534
C+ L + RCS CKSV YCS+ECQ HW HK TC +P P G + GIV C+ ++Q P Q+PP PV ++G+PI++ R SP E A + Q+ T + IE G A W ++G V V R D
Sbjct: 14 CSILPKDSTPFSRCSRCKSVAYCSKECQLAHWKT-HKATCD-------------EPAPVVPPAGPNEPVRGIVVACEGDRMQRSIFTPVQIPPSHDIYQLGSISPVSVLIGMPIIVWRHLRQSPFDIERSAALDN----------QIITYIMIEPDNGFAAPIWQ----ENVGTVTVMRQD 166
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: UPI000E6E5BA5 (ankyrin repeat and MYND domain-containing protein 2-like n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E5BA5) HSP 1 Score: 57.4 bits (137), Expect = 5.100e-6 Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 4 ITTCAALGCEEPASQRCSICKSVRYCSRECQRQHWTMEHKETCAGMASRRYSELT 168
+TTC G ++PA ++CS C++V+YC RECQR HW M HK+ CA +A S T
Sbjct: 321 VTTCFTCGLQKPA-KKCSKCRAVQYCDRECQRLHWFM-HKKACARLAQMPASNTT 373
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: E9ICU3_SOLIN (MYND-type domain-containing protein (Fragment) n=20 Tax=Formicidae TaxID=36668 RepID=E9ICU3_SOLIN) HSP 1 Score: 56.6 bits (135), Expect = 9.450e-6 Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 31 EEPASQRCSICKSVRYCSRECQRQHWTMEHKETCA--GMASRRYSELTGLDPFQAHPSVG 204
E+ A+++CS CK+V+YC RECQR HW M HK+ CA G + +LT +D Q +VG
Sbjct: 340 EDKATKKCSKCKAVQYCDRECQRLHWFM-HKKACARLGQSPANNGKLTDVDKEQISNAVG 398
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: A0A2K3MVH0_TRIPR (Ubiquitin carboxyl-terminal hydrolase 19-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MVH0_TRIPR) HSP 1 Score: 56.2 bits (134), Expect = 1.470e-5 Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 28 CEEPASQRCSICKSVRYCSRECQRQHWTMEHKETC--AGMASRRYSELTGLDPFQAHPSVGRSS 213
C S++CS CKSVRYCS ECQ+ HW HKE C G+ + + T F+A +VG+SS
Sbjct: 77 CASRGSKQCSRCKSVRYCSTECQQSHWNSGHKEKCKNVGVLNSGQNGTTN-GGFKASAAVGKSS 139
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Match: A0A2K1LAL7_PHYPA (MYND-type domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LAL7_PHYPA) HSP 1 Score: 55.5 bits (132), Expect = 1.520e-5 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query: 28 CEEPASQRCSICKSVRYCSRECQRQHWTMEHKETC 132
C++P +RCS CKS+ YCSRECQ +HW+ EHK C
Sbjct: 216 CQKPTKRRCSRCKSISYCSRECQVKHWSEEHKFQC 250 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49216.12106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49216.12106.1 >prot_H-elongata_contig49216.12106.1 ID=prot_H-elongata_contig49216.12106.1|Name=mRNA_H-elongata_contig49216.12106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp MITTCAALGCEEPASQRCSICKSVRYCSRECQRQHWTMEHKETCAGMASRback to top mRNA from alignment at H-elongata_contig49216:551..2689- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49216.12106.1 ID=mRNA_H-elongata_contig49216.12106.1|Name=mRNA_H-elongata_contig49216.12106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2139bp|location=Sequence derived from alignment at H-elongata_contig49216:551..2689- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49216:551..2689- >mRNA_H-elongata_contig49216.12106.1 ID=mRNA_H-elongata_contig49216.12106.1|Name=mRNA_H-elongata_contig49216.12106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig49216:551..2689- (Himanthalia elongata Himel1 dioecious)back to top |