mRNA_H-elongata_contig49195.12103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49195.12103.1
Unique NamemRNA_H-elongata_contig49195.12103.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: A0A6H5JAS9_9PHAE (Glyco_18 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAS9_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 7.030e-74
Identity = 133/237 (56.12%), Postives = 158/237 (66.67%), Query Frame = 1
Query:   19 LSIEDLLHMAELLVQEALLRSYHGFVLDIPMSDGIEEFVSAIVRTSERSGIHLLIIQSVRPMAKLSPRHIERLVPLVHRFSLMTYDY-------GAGGGW--ATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGG--TQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDR---DMVDHRATFPTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            LS  DL  MAELLV EA+ R Y G+VLDIP+SDGIEEFVS I R + R G  L++IQSVRP   LS    +RLVPL+HRFSLMTYDY       GA  G     GGVPNSP SW+RECVEA AP G G  LR K L+G+PFYG  N ++ + G     + G +         L WD   +EH++SYR+R    M +H ATFPTL FIQER+ LA ELGVG+A+WELG GMPY+FDLL
Sbjct:  239 LSRADLREMAELLVAEAVQRGYDGYVLDIPLSDGIEEFVSGIERAASRRGEDLILIQSVRPGVSLSAHLTDRLVPLIHRFSLMTYDYRPSDNSQGAFHGHRRGVGGVPNSPLSWVRECVEAFAPRGRGSELRAKTLIGIPFYGYDNGRAITSGDVVSLLTGGK----VLPAGLEWDSEWKEHILSYRERRAEGMQEHVATFPTLAFIQERIDLASELGVGLALWELGQGMPYWFDLL 471          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: W2LN82_PHYPR (GH18 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2LN82_PHYPR)

HSP 1 Score: 126 bits (317), Expect = 9.250e-31
Identity = 77/228 (33.77%), Postives = 121/228 (53.07%), Query Frame = 1
Query:   16 QLSIEDLLHMAELLVQEALLRSYHGFVLDIPMSDGIEEFVSAI---VRTSERSGIHLLIIQSVRPMAKLSPRHIERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGGTQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATF-PTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            +LS ED+  + E +++      + G V +IP+ +G  + +  I    R +++  I +L   S      ++      L PLVHRFS+  YD+ A G       PN+P+ W+++ +E ++P       RQKVLMG+PFYG  N  + +G T      +   D++   + WD  + E   +Y   D   H   F P L F+Q+RL+L QE  VGVA+WELG G+ +F+DLL
Sbjct:  198 RLSSEDVPIIIEKMLELVNEYKFDGMVFEIPVMEGTVDMLQQIGSAFRAADKLLILVLSRSSQEGELPVTHEIFNELAPLVHRFSMNAYDFSAPG-------PNAPYPWLKKTLEKMSPME-----RQKVLMGIPFYGYDNSDAITGSTYI----QSLKDNDVSKIRWDATAHECQHTYTTADTHSHHVVFFPCLQFLQDRLKLFQEKHVGVAIWELGQGLDFFYDLL 409          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: G4ZE89_PHYSP (GH18 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZE89_PHYSP)

HSP 1 Score: 121 bits (303), Expect = 1.290e-30
Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 1
Query:   82 YHGFVLDIPMSDGIEEFVSAIVRTSERSG-IHLLIIQSVRPMAKLSPRH--IERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGGTQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATF-PTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            + G V +IP++ G  + +  + R    +  + +L++       +L   H     L PLVHRFS+  YD+ A G       PN+P+ W+++ +E ++P       RQ++L+GLPFYG  N  + +G T      +   D++   + WD  + E    Y  +D   H   F P L F+Q+RL+L +E GVGVA+WELG G+ +F+DLL
Sbjct:   10 FDGMVFEIPVTAGTLDMLQQMGRAFRAADKLLILVLSRSTNEGELPVTHELFAELAPLVHRFSMNAYDFSAPG-------PNAPYPWLKKTLEKMSPME-----RQRILLGLPFYGYDNGDAITGSTYI----QSLKDNDVSKIRWDSTAHECQHVYTAQDTGSHHVVFFPCLQFLQDRLKLYKERGVGVAIWELGQGLDFFYDLL 199          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: A0A1S3H3M1_LINUN (chitinase domain-containing protein 1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H3M1_LINUN)

HSP 1 Score: 121 bits (304), Expect = 1.620e-30
Identity = 80/233 (34.33%), Postives = 116/233 (49.79%), Query Frame = 1
Query:    7 VYFQLSIEDLLHMAELLVQEALLRSYHGFVLDIPMSDGIEEFVSAIVRTSERSGIHLLI---IQSVRPMAKLSPRHIERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSG---GTQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATFPTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            +Y +L+ ++L+H  ELL       S + F+         E F       +E   + L++   +        +     E L P++  FSLMTYDY      + G  PNSP SW+R CVE L PE S    R+K+L+GL FYG   +    G   G Q ++        + P L WD  S EH   Y+   +  H   +P+L  I++RL LA ELG G+++WE+G G+ YFFDLL
Sbjct:    1 MYDELTKKELVHFLELLYYIVHSLSCYYFLXXXXXXXXXEHFAEDF--HAENKKVILVLPPPLMQRNSQGMVGVEDFEALAPVMDAFSLMTYDYS--NPMSPG--PNSPLSWMRSCVETLVPE-SASPYRRKILLGLNFYGADYVPGGGGPILGQQFIEILT----KHKPKLVWDATSSEHTFQYKT-GIGSHVVYYPSLQSIKDRLDLANELGTGISIWEIGQGLDYFFDLL 221          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: UPI0003339FF0 (chitinase domain-containing protein 1 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI0003339FF0)

HSP 1 Score: 125 bits (314), Expect = 1.930e-30
Identity = 78/236 (33.05%), Postives = 123/236 (52.12%), Query Frame = 1
Query:   28 EDLLHMAELLVQEALLRSYHGFVLDI------PMSDGIEEFVSAIVRTSERSGIHLLIIQSVRP--------MAKLSPRHIERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGGTQAVDGPE--DDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATFPTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            +++  + + LVQ A  + + GFV+++          G+   ++ +    +++  HLL++ +V P        +   + +  E+L P++  FSLMTYDY      A    PN+P SW+R CV+ L P+      R K+L+GL FYG  +  +     + V G         + P L WD  + EHV  Y+      H   +PTL  +Q RL LAQELGVG+++WELG G+ YF+DLL
Sbjct:  167 DEIEELGKTLVQVAKNQHFDGFVVEVWTQLLGQKQAGLVHMLTHMAEALQQA--HLLLLLAVPPAVTPGTHQLGMFTQQEFEQLAPMLDGFSLMTYDYST----AQQPGPNAPLSWVRACVQVLDPKSKW---RSKILLGLNFYG-VDYSASRDAREPVVGSRYIQMLKEHRPQLMWDGQAAEHVFEYKRSRGGRHVVFYPTLKSVQVRLDLAQELGVGLSIWELGQGLDYFYDLL 392          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: UPI00136227DF (chitinase domain-containing protein 1 isoform X1 n=2 Tax=Hylobates moloch TaxID=81572 RepID=UPI00136227DF)

HSP 1 Score: 119 bits (298), Expect = 5.040e-30
Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  220 RHIERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSG-----GTQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATFPTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            +  E+L P++  FSLMTYDY      A    PN+P SW+R CV+ L P+      R K+L+GL FYG     S        G + +   +D    + P + WD  + EH   Y+      H   +PTL  +Q RL+LAQELGVGV++WELG G+ YF+DLL
Sbjct:   37 KEFEQLAPVLDGFSLMTYDYST----AHQPGPNAPLSWVRACVQVLDPKSKW---RSKILLGLNFYGMDYATSKDAREPVVGARYIQTLKD----HRPRMVWDSQASEHFFEYKKSRSGRHIVFYPTLKSLQVRLELAQELGVGVSIWELGQGLDYFYDLL 186          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: D0NMM5_PHYIT (GH18 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NMM5_PHYIT)

HSP 1 Score: 119 bits (298), Expect = 7.150e-30
Identity = 69/206 (33.50%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   82 YHGFVLDIPMSDGIEEFVSAIVRTSERSG-IHLLIIQSVRPMAKLSPRH--IERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGGTQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATF-PTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            + G V +IP+  G  + +  I R    +  + +L++       +L   H     L PLVHRFS+  YD+   G       PN+P+ W+++ +E ++P       RQKVLMG+PFYG  N  + +G T      +  +D+    + WD  + E   +Y   +   H   F P L F+Q+RL+L +E  VGVA+WELG G+ +F+DLL
Sbjct:   10 FDGMVFEIPVMQGTVDMLQHIGRAFRAADKLLILVLSRSSKEGELPVTHEIFNELAPLVHRFSMNAYDFSMPG-------PNAPYPWLKKTLEKMSPME-----RQKVLMGIPFYGYDNRDAITGSTYI----QSLTDNEVSKIRWDATAHECQHTYTAVETNSHHVVFFPCLQFLQDRLKLYKEKHVGVAIWELGQGLEFFYDLL 199          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: A0A670IDC8_PODMU (Chitinase domain containing 1 n=5 Tax=Lacertinae TaxID=162266 RepID=A0A670IDC8_PODMU)

HSP 1 Score: 124 bits (310), Expect = 7.500e-30
Identity = 79/225 (35.11%), Postives = 116/225 (51.56%), Query Frame = 1
Query:   55 LVQEALLRSYHGFVLDIPMSDGIEE---FVSAIVRTSE-----RSGIHLLIIQSVRP----MAKLSPRHIERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGGTQAVDGPE--DDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATFPTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            L+Q A   ++ GFV ++    G ++    +  +   SE     R  + L+I  +V P    +   + +  ++L P+V  FSLMTYDY A         PNSP  W+R CV+ L PE      R K+L+GL FYG  +  + S   + + G +  +    + P L WD    EH   Y+      H   +PTL  IQ RL+LA+ELG G+A+WELG G+ YF+DLL
Sbjct:  178 LIQIAKNENFDGFVAEVWSQLGNQKQTGLIHLLTHLSEALHQVRLKLMLVIPPTVMPGTNQLGSFTKKEFDQLAPIVDSFSLMTYDYSAPQRPG----PNSPLPWMRACVQMLDPEAKW---RSKILLGLNFYG-MDYSALSASGEPIIGNKYIEILKEHKPKLVWDEQIAEHYFEYKKSKGGKHAVFYPTLKSIQLRLELAKELGTGIAIWELGQGLDYFYDLL 394          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: A0A0P1AEY4_PLAHL (Ca2: cation antiporter family n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEY4_PLAHL)

HSP 1 Score: 124 bits (310), Expect = 9.950e-30
Identity = 72/206 (34.95%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   82 YHGFVLDIPMSDGIEEFVSAIVRTSERSG-IHLLIIQSVRPMAKLSPRH--IERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGGTQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATF-PTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            + G V +IP+ +G  + +  I R    +  + +L++       +L   H     L PLVHRFS+  YDY   G       PN+P++W+ + ++ ++P       RQKVLMGLPFYG  N  + +G T      +  S++    + WD  + E   SY       H   F P L F+Q+RL+L +E  VGVA+WELG G+ YF+DLL
Sbjct:  224 FDGIVFEIPVQEGTVDMLQQIGRAFRAANKLLILVLSRCSQEGELPVTHEMFNELAPLVHRFSINAYDYSMPG-------PNAPYTWLEKTLKNMSPME-----RQKVLMGLPFYGYDNTDAITGSTYI----QSLSENEISEIRWDAKAHECHHSYSAAQTRSHHVVFYPCLQFLQDRLKLFREQHVGVAIWELGQGLEYFYDLL 413          
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Match: UPI0018D61A7A (chitinase domain-containing protein 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D61A7A)

HSP 1 Score: 123 bits (309), Expect = 1.060e-29
Identity = 78/217 (35.94%), Postives = 110/217 (50.69%), Query Frame = 1
Query:   76 RSYHGFVLDIPMSDG------IEEFVSAIVRTSERSGIHLLIIQSVRPMAK----LSPRHIERLVPLVHRFSLMTYDYGAGGGWATGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGGTQ---AVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATFPTLTFIQERLQLAQELGVGVAVWELGHGMPYFFDLL 687
            +S+ G VL++    G      ++  V  I      S + L+++     MA      S    + L P+V  FSLMTYDY +    A    PNSP  W+R CV+ +AP+   +  R K+L+GL FYG      +  G Q   A+ GP          L W+    EHV  Y+      H+  +P+L  IQ RLQLAQELG G+++WELG G+ YF+DLL
Sbjct:  190 QSFDGIVLEVWSQLGGQAKTELQHLVVDIADAMHNSHMKLVLVIPPPVMASGPGMFSSSDFKTLYPVVDEFSLMTYDYSS----AQSPGPNSPIDWVRSCVKEIAPDNEADQ-RSKILLGLNFYG------YDYGPQSAEAIIGPRYLDLLKKHKLKWNTAQAEHVFDYKKDGPWVHQVYYPSLKSIQVRLQLAQELGTGISIWELGQGLDYFYDLL 395          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49195.12103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAS9_9PHAE7.030e-7456.12Glyco_18 domain-containing protein n=2 Tax=Ectocar... [more]
W2LN82_PHYPR9.250e-3133.77GH18 domain-containing protein n=10 Tax=Phytophtho... [more]
G4ZE89_PHYSP1.290e-3033.50GH18 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A1S3H3M1_LINUN1.620e-3034.33chitinase domain-containing protein 1-like n=1 Tax... [more]
UPI0003339FF01.930e-3033.05chitinase domain-containing protein 1 n=1 Tax=Echi... [more]
UPI00136227DF5.040e-3040.37chitinase domain-containing protein 1 isoform X1 n... [more]
D0NMM5_PHYIT7.150e-3033.50GH18 domain-containing protein n=2 Tax=Phytophthor... [more]
A0A670IDC8_PODMU7.500e-3035.11Chitinase domain containing 1 n=5 Tax=Lacertinae T... [more]
A0A0P1AEY4_PLAHL9.950e-3034.95Ca2: cation antiporter family n=1 Tax=Plasmopara h... [more]
UPI0018D61A7A1.060e-2935.94chitinase domain-containing protein 1-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49195contigH-elongata_contig49195:10..2320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.0
Seed ortholog evalue1.1e-60
Seed eggNOG ortholog2880.D7FL31
Preferred nameCHID1
KEGG rclassRC02795
KEGG koko:K03046,ko:K17525
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
GOsGO:0000323,GO:0001817,GO:0001818,GO:0002576,GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005775,GO:0005794,GO:0005802,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006954,GO:0008061,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016798,GO:0017144,GO:0030246,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032101,GO:0032102,GO:0032940,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046348,GO:0046903,GO:0048519,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0065007,GO:0070013,GO:0070492,GO:0071704,GO:0080134,GO:0097367,GO:0097708,GO:0098791,GO:1900015,GO:1900016,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.chitinase activity
EggNOG OGsKOG2091@1,KOG2091@2759
EC2.7.7.6
COG Functional cat.P
CAZyGH18
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400,ko04091
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionchitinase-domain containing protein
Ec32 orthologEc-05_006850.1
Exons5
Model size690
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49195.12103.1prot_H-elongata_contig49195.12103.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49195 10..2320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.428478-CDS-H-elongata_contig49195:9..891622930809.428478-CDS-H-elongata_contig49195:9..89Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 10..89 +
1691679579.618459-CDS-H-elongata_contig49195:9..891691679579.618459-CDS-H-elongata_contig49195:9..89Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 10..89 +
1622930809.4474518-CDS-H-elongata_contig49195:394..5031622930809.4474518-CDS-H-elongata_contig49195:394..503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 395..503 +
1691679579.6311567-CDS-H-elongata_contig49195:394..5031691679579.6311567-CDS-H-elongata_contig49195:394..503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 395..503 +
1622930809.4695756-CDS-H-elongata_contig49195:951..12031622930809.4695756-CDS-H-elongata_contig49195:951..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 952..1203 +
1691679579.6415336-CDS-H-elongata_contig49195:951..12031691679579.6415336-CDS-H-elongata_contig49195:951..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 952..1203 +
1622930809.48859-CDS-H-elongata_contig49195:1528..16871622930809.48859-CDS-H-elongata_contig49195:1528..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 1529..1687 +
1691679579.6520884-CDS-H-elongata_contig49195:1528..16871691679579.6520884-CDS-H-elongata_contig49195:1528..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 1529..1687 +
1622930809.5101876-CDS-H-elongata_contig49195:2230..23201622930809.5101876-CDS-H-elongata_contig49195:2230..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 2231..2320 +
1691679579.6623-CDS-H-elongata_contig49195:2230..23201691679579.6623-CDS-H-elongata_contig49195:2230..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49195 2231..2320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49195.12103.1

>prot_H-elongata_contig49195.12103.1 ID=prot_H-elongata_contig49195.12103.1|Name=mRNA_H-elongata_contig49195.12103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MCVYFQLSIEDLLHMAELLVQEALLRSYHGFVLDIPMSDGIEEFVSAIVR
TSERSGIHLLIIQSVRPMAKLSPRHIERLVPLVHRFSLMTYDYGAGGGWA
TGGVPNSPFSWIRECVEALAPEGSGEGLRQKVLMGLPFYGETNLKSFSGG
TQAVDGPEDDSDSNTPSLYWDLMSREHVISYRDRDMVDHRATFPTLTFIQ
ERLQLAQELGVGVAVWELGHGMPYFFDLL*
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mRNA from alignment at H-elongata_contig49195:10..2320+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49195.12103.1 ID=mRNA_H-elongata_contig49195.12103.1|Name=mRNA_H-elongata_contig49195.12103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2311bp|location=Sequence derived from alignment at H-elongata_contig49195:10..2320+ (Himanthalia elongata Himel1 dioecious)
ATGTGCGTGTATTTTCAGCTCTCCATCGAGGACTTGCTGCACATGGCGGA GTTGCTAGTGCAAGAAGCGTTGCTGCGAAGGTGAGAAGGCGCCATCGCCA TCCCCATGTATGTTTTGCATTTGAAGGAGAGGAGAGGGATGGGACACCCG GGGGAGGAGAGCTGCCGCGTTGTTGATATTGGTTCTAGCGTTGGTGCTAC CATTGATTCCAGCGGGGAATGCCACGCAACCTGTAGCCGAGAAATCACCC CCTCCTGCCCCGCACGTGGCTGGCGAGTTATGAGGCAACCACGCTTACGT GACGGCCAGCTTCCGTGATTTTTACAATGCTCGTTGTGGACGTGCCCCCC CCCCTCCAACCTCCCTTTCAACCCGTCATTCGAAGTTACCACGGGTTCGT CTTGGATATCCCCATGTCGGATGGAATCGAGGAATTCGTGTCGGCGATAG TCAGGACCAGCGAGCGCAGCGGCATTCACCTCTTGATTATTCAGGTAGGT TTGTGCTATTCGCGAGCGTGCCTCCCGCTCGCGTGTGTGTATTTGAATCA ATGGTGGGGGGGGGAGGGGAGCAATCAACGGGTATCTTCTGTATGCATTC GGTTTTGTTTGTATTTTGGCATATATCCATGCTTTACTTGTTGCTCTACC ATTTTGACGTCCGTATGTATGTGTATTACGCGAGATAAGCCCTATTTACG AGCGACGGTAATTACGCCCTGATGACTTGCGAAGGGCTAAGGAATGTGTC CTTCGGCGCCATTTTTTTGCGTTCGCGCTTCTAGTAGGGATCCACTGGGA TTTCTCTCCCGGTATCTCTCTATTCTAGTCCAGTTGAGCTCTTTAAGCGA CAATCAGACTCTGTACGGCCTTTTCCAGTCATCACCCCGCGGACGACGAC CCTTTCTCTCGTTTTATCCTTTATGACAATGACAAACTGCAGTCTGTTCG CCCGATGGCGAAGCTGTCGCCCCGCCATATCGAGAGGCTAGTCCCCTTAG TCCACCGCTTCTCGCTCATGACCTACGACTACGGTGCGGGCGGTGGGTGG GCTACTGGAGGGGTTCCCAACAGCCCCTTCTCTTGGATAAGGGAGTGTGT CGAGGCGTTGGCGCCCGAGGGTTCAGGTGAAGGTCTGCGACAGAAGGTGT TGATGGGGCTGCCGTTCTACGGTGAGACTAATCTTAAAAGCTTCGTGAAA CGCGCGAACTGATGTTTTTCGCTAGGAGATGTTTTATCCCTGGAAGGCGT TCTTCGGTATTTTTGTAGGGGCTCAGGTTTTCTGACGTAGGGATTGTTCT CGGCGGTATTTTCAAAGCCCCGCTGATAGCCATGGATTGCCGCGCGGAAA TAACGCCGGAAGCGTCACGCGGCATATATCGAGCCGATAGCCATGTCTCC AATTTACCCTCTCTCCCAACGAAAATGACCGCGCAGGCTATGATAACGGG CAAGACGTTGGCTACGACGCCGCAATATCGATCCTTGGGGGAAAACGATC CGCGAGGACCGAGGGCCAGAGCGGCGGTACCCAAGCCGTGGACGGGCCGG AGGACGATAGCGACAGCAACACGCCGTCCTTGTACTGGGACCTTATGTCG AGGGAGCACGTGATCTCTTATCGTGATCGCGACATGGTGGACCACCGAGC CACGTTTCCAACCCTGACGTTTATTCAGGTGGGCGCGACAAGAGGCGGGC GGCGCGCTACGGACAGATAAAACAAAGGGTTGGGATGAACTCTTATGTGT GTGTGTTTTTTTTGAAGAAAAACTCTTGTCGACGCCTTTTGTTGTGGCGA TGGTGGTGGTCGATTTGCCGTTAACACCCGGCACGGGACGGCACGGATGA TGTGCCGCGGGGGGTTTGTGCCCCCGTGAGTTTGATCATTTGTTTGGAGT CACCCTTGAGACTGTGTATTGTGCGCTTATACCCGCGAGCCGATGTATCA GACAAAAAGGCAAGCCGTATCGCGGGACAAACATAATATGGTTCATTTCG TTTGGGGTGGATGCTAAACAAAACACCCGGAAATCTCGGCGGCACGGAAG GGGAGGGCACGCGGCGTTTGTACACCACCGCGGCACGTTTGCGGGCCCCA TCCCCATCGAGGAGACAAAGGAGTCCGCCGCCACCTGTTTATGATATCGT AGCCATCCCGTATACTCTTCGCGTGAATAAAATGTTCGTATTTGTACCGT GGCTGACGTCGTTGCCGACAGGAGCGACTCCAGCTGGCGCAGGAGCTTGG TGTTGGCGTGGCCGTGTGGGAGCTCGGCCATGGTATGCCCTATTTCTTCG ACCTCCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig49195:10..2320+

>mRNA_H-elongata_contig49195.12103.1 ID=mRNA_H-elongata_contig49195.12103.1|Name=mRNA_H-elongata_contig49195.12103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig49195:10..2320+ (Himanthalia elongata Himel1 dioecious)
ATGTGCGTGTATTTTCAGCTCTCCATCGAGGACTTGCTGCACATGGCGGA
GTTGCTAGTGCAAGAAGCGTTGCTGCGAAGATGTGCGTGTATTTTCAGCT
CTCCATCGAGGACTTGCTGCACATGGCGGAGTTGCTAGTGCAAGAAGCGT
TGCTGCGAAGTTACCACGGGTTCGTCTTGGATATCCCCATGTCGGATGGA
ATCGAGGAATTCGTGTCGGCGATAGTCAGGACCAGCGAGCGCAGCGGCAT
TCACCTCTTGATTATTCAGTTACCACGGGTTCGTCTTGGATATCCCCATG
TCGGATGGAATCGAGGAATTCGTGTCGGCGATAGTCAGGACCAGCGAGCG
CAGCGGCATTCACCTCTTGATTATTCAGTCTGTTCGCCCGATGGCGAAGC
TGTCGCCCCGCCATATCGAGAGGCTAGTCCCCTTAGTCCACCGCTTCTCG
CTCATGACCTACGACTACGGTGCGGGCGGTGGGTGGGCTACTGGAGGGGT
TCCCAACAGCCCCTTCTCTTGGATAAGGGAGTGTGTCGAGGCGTTGGCGC
CCGAGGGTTCAGGTGAAGGTCTGCGACAGAAGGTGTTGATGGGGCTGCCG
TTCTACGGTGAGACTAATCTTAAAAGCTTCTCTGTTCGCCCGATGGCGAA
GCTGTCGCCCCGCCATATCGAGAGGCTAGTCCCCTTAGTCCACCGCTTCT
CGCTCATGACCTACGACTACGGTGCGGGCGGTGGGTGGGCTACTGGAGGG
GTTCCCAACAGCCCCTTCTCTTGGATAAGGGAGTGTGTCGAGGCGTTGGC
GCCCGAGGGTTCAGGTGAAGGTCTGCGACAGAAGGTGTTGATGGGGCTGC
CGTTCTACGGTGAGACTAATCTTAAAAGCTTCAGCGGCGGTACCCAAGCC
GTGGACGGGCCGGAGGACGATAGCGACAGCAACACGCCGTCCTTGTACTG
GGACCTTATGTCGAGGGAGCACGTGATCTCTTATCGTGATCGCGACATGG
TGGACCACCGAGCCACGTTTCCAACCCTGACGTTTATTCAGAGCGGCGGT
ACCCAAGCCGTGGACGGGCCGGAGGACGATAGCGACAGCAACACGCCGTC
CTTGTACTGGGACCTTATGTCGAGGGAGCACGTGATCTCTTATCGTGATC
GCGACATGGTGGACCACCGAGCCACGTTTCCAACCCTGACGTTTATTCAG
GAGCGACTCCAGCTGGCGCAGGAGCTTGGTGTTGGCGTGGCCGTGTGGGA
GCTCGGCCATGGTATGCCCTATTTCTTCGACCTCCTGTAAGAGCGACTCC
AGCTGGCGCAGGAGCTTGGTGTTGGCGTGGCCGTGTGGGAGCTCGGCCAT
GGTATGCCCTATTTCTTCGACCTCCTGTAA
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