mRNA_H-elongata_contig49082.12087.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49082.12087.1
Unique NamemRNA_H-elongata_contig49082.12087.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49082.12087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49082contigH-elongata_contig49082:1912..3894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.6688924-CDS-H-elongata_contig49082:1911..22471622930807.6688924-CDS-H-elongata_contig49082:1911..2247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 1912..2247 -
1691679578.9158063-CDS-H-elongata_contig49082:1911..22471691679578.9158063-CDS-H-elongata_contig49082:1911..2247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 1912..2247 -
1622930807.6837075-CDS-H-elongata_contig49082:3801..38941622930807.6837075-CDS-H-elongata_contig49082:3801..3894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 3802..3894 -
1691679578.9345086-CDS-H-elongata_contig49082:3801..38941691679578.9345086-CDS-H-elongata_contig49082:3801..3894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 3802..3894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49082.12087.1prot_H-elongata_contig49082.12087.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49082 1912..3894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49082.12087.1

>prot_H-elongata_contig49082.12087.1 ID=prot_H-elongata_contig49082.12087.1|Name=mRNA_H-elongata_contig49082.12087.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
VGGSARDATRNTPRDAARKSEQDSARASEVKECPREETPGAEQSSRPPIL
GVGMLKQTATTATLTAAGGCQRRGRAQKKRAKKIKDKMRHLCLEAADATG
AAAAVAARASRHGANLATLTETTRSRVSFDGSPPGGGGGTGDG
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mRNA from alignment at H-elongata_contig49082:1912..3894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49082.12087.1 ID=mRNA_H-elongata_contig49082.12087.1|Name=mRNA_H-elongata_contig49082.12087.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1983bp|location=Sequence derived from alignment at H-elongata_contig49082:1912..3894- (Himanthalia elongata Himel1 dioecious)
GTTGGTGGTAGCGCGAGGGATGCAACGCGAAACACCCCCCGAGACGCCGC
CAGAAAAAGCGAGCAAGATTCGGCTCGAGCCTCGGAGGTGAAGGTAGGGC
CTGCATCCTCCCTCTTCGAAAAAGGAGAGGGGGCGCAAGCTTGGGAAGCT
GCCGGTCGGCCTGGTGTGTGTCGTGTGTAGCTTTTATTACAGTTTTTATG
GTTTATTTGAGTCGTTATTTTTTTTCGTTTGTTTTTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTTATTATTTATTTATTTTCGTTTC
CTTTTTTATGTTTTGTCAAAATGTTTTGTTGCTTTTTGTGATATATATTT
TTTTTATAGATATTGATCCATTTGCCTTGCCTCGCGGTTGCGTGGCTCGC
GAAAAAGGCTTTGAGGGTTTTTTATTTTCGATTCCCCATTAAGGGTAAGG
CGTATCTGCCATCCCCGGGATTGCCTCGGCAAAACCGATTTTAGGACATG
TTATTTAGCTTTCGACCAATCAGAACCCGATTTCAATTGAAATCCGCTGG
AAGTTTAATACCCGCCCTTACAAACCTTTTGTTTGTCGATGATGTATCCA
TCATAGTATAGGGAGAATATATAACCCTCCTGTACGCATACAACTGTTTT
CGTGTACTTCCCTGAGCTGCAATATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTAAAATAATAAAAAAGTACCACTCTCTCTCTTCTGTC
GATGAATTATATACTGTATAAAGTACACATTATAGGCTATTCAACACGCT
ATTCGATTCTGAATAGTACTGTACAGTGTTGTATATGTTATCAATCCCAA
CTGTGCTGTACTGTACTGTGCTGTACTGTACAGTACAGTATATATATACA
CATAGTATAATCTAGTAATAATATTACCCCAGTGCAACGTAGTCCATCCC
GCCTATCATCAGCCCATCTATAACGCTCCCCGGTTAGTTAACGCCTCATT
TCGTTTTTTTTCTATTATTATAGTGGTGCAAGGTGAGTACTCCTTCTAGA
CCTGCTAAACTACACTTGTATAATGGCTGAAGTTTTGCTTACTCCCGCTC
TCTCATTCTATACTGTACTATAATATATTATACTATACTATAATATACTA
TACTATACTGTAATATACTATACTATACTGTAATATACTATACTATACTA
CACTACACTATACTACACTATACTAAAGTATGTTATACTATCCTTTCCGC
GCTACAAAATATTTAACTATAGAGCCTATACAAATGGTTGTGTGGATGTT
TACCAGGGTCCTTAATTTAATATATATATATATACATATTTATATACATA
CATAGATATATATACATATATACACAATTGTTCTCACACTATAGAGATTG
GGCATTGTGTTGTTCTCAGCCCCCCTTGTGGTGTATTTAACAATACTGCA
TATATTTTCGCCTTTCGCACCTTAGCGGGAGCTCAAACACGCACACACAC
GCACTATGCACACAGAGAGAACAGGTGTTAATGTTAATGTTATCGTTGTC
AAATATATATCACCGCTCTTCCTTTGCGTCGCTTTTGTTTCTTCCAGGAG
TGTCCCCGGGAGGAAACGCCGGGGGCTGAGCAGTCGAGCAGGCCCCCGAT
CCTCGGCGTCGGTATGCTAAAACAGACGGCTACGACTGCAACTTTGACCG
CCGCCGGTGGTTGCCAGAGGCGAGGCCGCGCGCAGAAGAAACGGGCGAAG
AAGATCAAGGATAAGATGCGACACCTCTGCCTCGAGGCAGCAGACGCAAC
AGGTGCAGCAGCAGCGGTAGCAGCGCGCGCCTCGAGGCATGGCGCCAACC
TCGCGACTCTGACAGAGACAACGAGATCCCGTGTTTCTTTCGATGGGTCT
CCGCCAGGCGGCGGCGGTGGAACTGGTGACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig49082:1912..3894-

>mRNA_H-elongata_contig49082.12087.1 ID=mRNA_H-elongata_contig49082.12087.1|Name=mRNA_H-elongata_contig49082.12087.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig49082:1912..3894- (Himanthalia elongata Himel1 dioecious)
GTTGGTGGTAGCGCGAGGGATGCAACGCGAAACACCCCCCGAGACGCCGC
CAGAAAAAGCGAGCAAGATTCGGCTCGAGCCTCGGAGGTGAAGGTTGGTG
GTAGCGCGAGGGATGCAACGCGAAACACCCCCCGAGACGCCGCCAGAAAA
AGCGAGCAAGATTCGGCTCGAGCCTCGGAGGTGAAGGAGTGTCCCCGGGA
GGAAACGCCGGGGGCTGAGCAGTCGAGCAGGCCCCCGATCCTCGGCGTCG
GTATGCTAAAACAGACGGCTACGACTGCAACTTTGACCGCCGCCGGTGGT
TGCCAGAGGCGAGGCCGCGCGCAGAAGAAACGGGCGAAGAAGATCAAGGA
TAAGATGCGACACCTCTGCCTCGAGGCAGCAGACGCAACAGGTGCAGCAG
CAGCGGTAGCAGCGCGCGCCTCGAGGCATGGCGCCAACCTCGCGACTCTG
ACAGAGACAACGAGATCCCGTGTTTCTTTCGATGGGTCTCCGCCAGGCGG
CGGCGGTGGAACTGGTGACGGCGAGTGTCCCCGGGAGGAAACGCCGGGGG
CTGAGCAGTCGAGCAGGCCCCCGATCCTCGGCGTCGGTATGCTAAAACAG
ACGGCTACGACTGCAACTTTGACCGCCGCCGGTGGTTGCCAGAGGCGAGG
CCGCGCGCAGAAGAAACGGGCGAAGAAGATCAAGGATAAGATGCGACACC
TCTGCCTCGAGGCAGCAGACGCAACAGGTGCAGCAGCAGCGGTAGCAGCG
CGCGCCTCGAGGCATGGCGCCAACCTCGCGACTCTGACAGAGACAACGAG
ATCCCGTGTTTCTTTCGATGGGTCTCCGCCAGGCGGCGGCGGTGGAACTG
GTGACGGC
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