mRNA_H-elongata_contig48970.12069.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48970.12069.1
Unique NamemRNA_H-elongata_contig48970.12069.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: D8LL28_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL28_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.900e-45
Identity = 84/100 (84.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    1 EGFDDAVDDVSYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQ-----FDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            EGFDDAVDDVSYT Y PKKL +G+PHPDPVVEN SMAAVDPPEL Y LKLQ      DVV+SGKLS+LQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV
Sbjct:  110 EGFDDAVDDVSYTVYRPKKLDIGIPHPDPVVENTSMAAVDPPELWYNLKLQELEGESDVVKSGKLSALQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 209
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: A0A0A9X3V8_LYGHE (Protein strawberry notch (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X3V8_LYGHE)

HSP 1 Score: 112 bits (280), Expect = 3.770e-30
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   31 SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            +Y  Y P KLK+G  HPDPVVE+AS+A+V+P +L Y L L  D++ +GKLS+LQLE+I YACQ HE   PDGSR GFFIGDGAGV
Sbjct:   31 TYATYMPSKLKIGKKHPDPVVESASLASVEPVDLWYDLMLPQDIISTGKLSALQLESIIYACQQHEIIWPDGSRGGFFIGDGAGV 115
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: UPI00103C2B51 (protein strawberry notch-like n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103C2B51)

HSP 1 Score: 111 bits (278), Expect = 6.270e-28
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    4 GFDDAVDDV------SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            G ++ VDD       +Y +Y P KLKLG  HPDPVVE AS+++V+P ++ Y L L  + +R+G LS+LQLEA+ YA QAHE +LPDGSRAGF IGDGAGV
Sbjct:   57 GDEEEVDDEEMGVAETYADYMPPKLKLGRKHPDPVVETASLSSVEPVDVTYKLSLPDETIRNGLLSALQLEAVVYASQAHEHKLPDGSRAGFLIGDGAGV 156
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: A0A8J9WME0_9CHLO (Protein strawberry notch homolog 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WME0_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 3.080e-27
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:   10 DDAVDDVSYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            D   + V++T+Y P KL  G PHPDPVVE AS+ AV+PP++ Y L++Q DVV SG LS LQLE+I YACQ HE  LPD SR  FFIGDGAGV
Sbjct:  213 DVGTEGVTFTDYRPAKLPYGKPHPDPVVETASLGAVEPPDVTYQLQIQ-DVVESGALSGLQLESIVYACQRHEQFLPDKSRCAFFIGDGAGV 303
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: T1KFC2_TETUR (Uncharacterized protein n=2 Tax=Tetranychus urticae TaxID=32264 RepID=T1KFC2_TETUR)

HSP 1 Score: 113 bits (282), Expect = 4.200e-27
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   31 SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            +Y +Y P KLK+GL HPD VVE +S+++V PP++ Y L +  DVV  GKLS+LQLEAI YACQ HE  LPDGSRAGF IGDGAGV
Sbjct:  347 TYADYMPSKLKVGLKHPDSVVETSSLSSVRPPDVYYRLAIPEDVVDEGKLSALQLEAIVYACQQHEVTLPDGSRAGFLIGDGAGV 431
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: UPI00067D762C (protein strawberry notch n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067D762C)

HSP 1 Score: 112 bits (281), Expect = 5.720e-27
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    4 GFDDAVDDV------SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            G ++ VDD       +Y +Y P KLKLG  HPDPVVE AS+++V+P ++ Y L L  + +RSG+LS+LQLEAI YA QAHE  LPDGSRAGF IGDGAGV
Sbjct:  163 GDEEEVDDEEMGVAETYADYMPLKLKLGRKHPDPVVETASLSSVEPVDVSYKLSLPDETIRSGQLSALQLEAIVYASQAHEHTLPDGSRAGFLIGDGAGV 262
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: A0A7I1A122_DANPL (protein strawberry notch n=4 Tax=Danaus TaxID=13036 RepID=A0A7I1A122_DANPL)

HSP 1 Score: 112 bits (281), Expect = 5.730e-27
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    4 GFDDAVDDV------SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            G ++ VDD       +Y +Y P KLKLG  HPDPVVE AS+++V+P ++ Y L L  D +RSG LS+LQLEA+ YA QAHE  LPDG+RAGF IGDGAGV
Sbjct:  218 GEEEEVDDEEMGVAETYADYMPTKLKLGRKHPDPVVETASLSSVEPVDVTYTLSLPDDTIRSGLLSALQLEAVVYASQAHEHTLPDGTRAGFLIGDGAGV 317
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: UPI001C3539A5 (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C3539A5)

HSP 1 Score: 112 bits (280), Expect = 7.640e-27
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    4 GFDDAVDDV------SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            G ++ VDD       +Y +Y P KLKLG  HPDPVVE AS+++V+P ++ Y L L  D VR G LS+LQLEA+ YA QAHE +LPDG+RAGF IGDGAGV
Sbjct:  159 GDEEEVDDEEMGVAETYADYMPPKLKLGRKHPDPVVETASLSSVEPADVTYKLSLPEDTVRGGLLSALQLEAVVYASQAHEHKLPDGTRAGFLIGDGAGV 258
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BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: UPI00188F0BDB (protein strawberry notch isoform X1 n=3 Tax=Manduca sexta TaxID=7130 RepID=UPI00188F0BDB)

HSP 1 Score: 112 bits (280), Expect = 7.810e-27
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    4 GFDDAVDDV------SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            G ++ VDD       +Y +Y P KLKLG  HPDPVVE AS+++V+P ++ Y L L  D VR G LS+LQLEA+ YA QAHE +LPDG+RAGF IGDGAGV
Sbjct:  187 GDEEEVDDEEMGVAETYADYMPPKLKLGRKHPDPVVETASLSSVEPADVTYKLSLPEDTVRGGLLSALQLEAVVYASQAHEHKLPDGTRAGFLIGDGAGV 286
[Close]
BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Match: A0A6A4ISX3_APOLU (AAA_34 domain-containing protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4ISX3_APOLU)

HSP 1 Score: 111 bits (278), Expect = 8.790e-27
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   31 SYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKLQFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV 285
            +Y  Y P KLK+G  HPDPVVE+AS+A+V+P +  Y L+L  D++ +GKLS+LQLE+I YACQ HE   PDGSR GFFIGDGAGV
Sbjct:   31 TYATYMPSKLKIGRKHPDPVVESASLASVEPVDFWYNLQLPQDIISTGKLSALQLESIIYACQQHEIFWPDGSRGGFFIGDGAGV 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48970.12069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL28_ECTSI3.900e-4584.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A0A9X3V8_LYGHE3.770e-3063.53Protein strawberry notch (Fragment) n=1 Tax=Lygus ... [more]
UPI00103C2B516.270e-2857.00protein strawberry notch-like n=1 Tax=Ostrinia fur... [more]
A0A8J9WME0_9CHLO3.080e-2761.96Protein strawberry notch homolog 1 n=1 Tax=Coccomy... [more]
T1KFC2_TETUR4.200e-2764.71Uncharacterized protein n=2 Tax=Tetranychus urtica... [more]
UPI00067D762C5.720e-2759.00protein strawberry notch n=1 Tax=Amyelois transite... [more]
A0A7I1A122_DANPL5.730e-2758.00protein strawberry notch n=4 Tax=Danaus TaxID=1303... [more]
UPI001C3539A57.640e-2758.00Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
UPI00188F0BDB7.810e-2758.00protein strawberry notch isoform X1 n=3 Tax=Manduc... [more]
A0A6A4ISX3_APOLU8.790e-2762.35AAA_34 domain-containing protein n=1 Tax=Apolygus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48970contigH-elongata_contig48970:3337..4073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D8LL28
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-27_000880.1
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.6999843-CDS-H-elongata_contig48970:3336..34891622930805.6999843-CDS-H-elongata_contig48970:3336..3489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48970 3337..3489 +
1691679578.034649-CDS-H-elongata_contig48970:3336..34891691679578.034649-CDS-H-elongata_contig48970:3336..3489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48970 3337..3489 +
1622930805.7172956-CDS-H-elongata_contig48970:3941..40731622930805.7172956-CDS-H-elongata_contig48970:3941..4073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48970 3942..4073 +
1691679578.046773-CDS-H-elongata_contig48970:3941..40731691679578.046773-CDS-H-elongata_contig48970:3941..4073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48970 3942..4073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48970.12069.1prot_H-elongata_contig48970.12069.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48970 3337..4073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48970.12069.1

>prot_H-elongata_contig48970.12069.1 ID=prot_H-elongata_contig48970.12069.1|Name=mRNA_H-elongata_contig48970.12069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
EGFDDAVDDVSYTNYEPKKLKLGLPHPDPVVENASMAAVDPPELCYILKL
QFDVVRSGKLSSLQLEAIAYACQAHETRLPDGSRAGFFIGDGAGV
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mRNA from alignment at H-elongata_contig48970:3337..4073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48970.12069.1 ID=mRNA_H-elongata_contig48970.12069.1|Name=mRNA_H-elongata_contig48970.12069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=737bp|location=Sequence derived from alignment at H-elongata_contig48970:3337..4073+ (Himanthalia elongata Himel1 dioecious)
GAGGGCTTCGACGATGCCGTCGACGACGTTTCCTACACGAACTACGAGCC
GAAGAAGCTCAAGCTGGGGCTGCCACACCCAGACCCCGTGGTGGAGAACG
CCTCCATGGCGGCGGTGGATCCGCCGGAGCTGTGCTACATACTCAAGCTT
CAGGTGGGTGGGTTCTTGCTCTGTTGGTTTGATATGTTGCAACGGATGAT
AGCCCCCCCCCCGCTGCGCCCCTCCATCTTCCGCCTCTTTGTGACGTCAC
AATACACCTTAGGTTGGATATATAACGCGTACCACTCGATGGGTCAACGA
GATGGATGTTTGGACCACTCGGCAACCACGATTGGAAAAAACCCCTGTGG
TACCACTCTCGATGCCGTCCCGCCCATGCTGAAGCCCCAATCCTCCAAGT
GACGAATCTTCTTAGCAGCGTTTAAACGAAAATCGTCGTTCGCCCCTCTA
GTTTGGTCCCCGCCGTTTCTCTTGTCGCCCAGAAATCAAATGTGTTGATG
CCTTGGATACAAAAGACGGGTTGATCATCAATCATTCAGGGGAGGGGGGG
GGGTTCTTCCTTTTTTTCCCGAATATTGCCCCGCCCGCAGAATCTTGAGG
GAGAGTTCGACGTGGTGAGGTCTGGAAAGCTGTCCTCGTTGCAGCTCGAG
GCCATCGCCTACGCATGCCAGGCGCACGAGACCCGGCTTCCCGACGGCAG
TCGCGCGGGATTCTTCATCGGTGACGGCGCTGGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig48970:3337..4073+

>mRNA_H-elongata_contig48970.12069.1 ID=mRNA_H-elongata_contig48970.12069.1|Name=mRNA_H-elongata_contig48970.12069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig48970:3337..4073+ (Himanthalia elongata Himel1 dioecious)
GAGGGCTTCGACGATGCCGTCGACGACGTTTCCTACACGAACTACGAGCC
GAAGAAGCTCAAGCTGGGGCTGCCACACCCAGACCCCGTGGTGGAGAACG
CCTCCATGGCGGCGGTGGATCCGCCGGAGCTGTGCTACATACTCAAGCTT
CAGGAGGGCTTCGACGATGCCGTCGACGACGTTTCCTACACGAACTACGA
GCCGAAGAAGCTCAAGCTGGGGCTGCCACACCCAGACCCCGTGGTGGAGA
ACGCCTCCATGGCGGCGGTGGATCCGCCGGAGCTGTGCTACATACTCAAG
CTTCAGTTCGACGTGGTGAGGTCTGGAAAGCTGTCCTCGTTGCAGCTCGA
GGCCATCGCCTACGCATGCCAGGCGCACGAGACCCGGCTTCCCGACGGCA
GTCGCGCGGGATTCTTCATCGGTGACGGCGCTGGGGTGTTCGACGTGGTG
AGGTCTGGAAAGCTGTCCTCGTTGCAGCTCGAGGCCATCGCCTACGCATG
CCAGGCGCACGAGACCCGGCTTCCCGACGGCAGTCGCGCGGGATTCTTCA
TCGGTGACGGCGCTGGGGTG
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