mRNA_H-elongata_contig48908.12062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48908.12062.1
Unique NamemRNA_H-elongata_contig48908.12062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A6H5KY88_9PHAE (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY88_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.180e-32
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFLCTPDGRLCVLDMGLMTEV EDQRYALLEYVSHLTAKDYEATL DLI+LGFIP+EIG DP+K
Sbjct:  632 GNFLCTPDGRLCVLDMGLMTEVGEDQRYALLEYVSHLTAKDYEATLYDLIVLGFIPEEIGQDPEK 696          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A835Z5E1_9STRA (Protein kinase:ABC1 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.460e-28
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFLCTPDGRL +LD GLMTEV E QRYALLEYVSHLTAKDY+ATL DLI LGFIP+EIGDDP K
Sbjct:  379 GNFLCTPDGRLVILDYGLMTEVTEAQRYALLEYVSHLTAKDYDATLTDLITLGFIPREIGDDPAK 443          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A7S2V6P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6P2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.660e-24
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFL TPDGRLC+LD GLMTE+ ED+R AL+EYV+HL  K+YE TL DL+ LGFIPKEI DDP+K
Sbjct:  528 GNFLLTPDGRLCILDYGLMTEIPEDRRLALIEYVAHLNGKEYEETLGDLVTLGFIPKEIQDDPEK 592          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A7S1JC13_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JC13_9EUGL)

HSP 1 Score: 103 bits (257), Expect = 3.080e-24
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFL TPDG+LCVLD GLMT++ EDQRY +LEY++HL+AKDY+ATL DLI LGFIP E+ +DP+K
Sbjct:  642 GNFLRTPDGKLCVLDYGLMTDITEDQRYGILEYIAHLSAKDYDATLTDLIGLGFIPPEMDEDPQK 706          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A7S1JAV4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JAV4_9EUGL)

HSP 1 Score: 103 bits (257), Expect = 3.090e-24
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFL TPDG+LCVLD GLMT++ EDQRY +LEY++HL+AKDY+ATL DLI LGFIP E+ +DP+K
Sbjct:  510 GNFLRTPDGKLCVLDYGLMTDITEDQRYGILEYIAHLSAKDYDATLTDLIGLGFIPPEMDEDPQK 574          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A7S4D969_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D969_HETAK)

HSP 1 Score: 101 bits (252), Expect = 1.460e-23
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFL TPDGRLCVLD GLMTEV ED+R AL+EY++HL A+D+EA+L DL +LGFIPKEI  DP K
Sbjct:  525 GNFLLTPDGRLCVLDYGLMTEVEEDRRLALIEYITHLNARDWEASLTDLTVLGFIPKEIDADPAK 589          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: D7FSM3_ECTSI (ABC1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM3_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.090e-23
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFL   DG LCVLD GLMTEV E+Q YALLEYV HL AKDY ATL DLI+LGFI  E+GDDP+K
Sbjct:  453 GNFLLQDDGTLCVLDFGLMTEVTEEQSYALLEYVIHLIAKDYPATLEDLIVLGFISPEVGDDPEK 517          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A0G4ES84_VITBC (Protein kinase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ES84_VITBC)

HSP 1 Score: 99.8 bits (247), Expect = 6.950e-23
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFL T DGRLCVLD GLMTE+  DQR AL+EYV+HL+A+DY+  LNDLI LGFIP EIG DP+K
Sbjct:  510 GNFLRTADGRLCVLDFGLMTEIKPDQRVALVEYVAHLSARDYDKALNDLITLGFIPPEIGADPEK 574          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: A0A0G4GGM9_VITBC (Protein kinase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GGM9_VITBC)

HSP 1 Score: 99.8 bits (247), Expect = 6.960e-23
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPK 198
            GNFL TPDGRLC+LD GL+TE+ EDQR AL+EYV+HL+AKDY ATL DL  LGFIPKE+ +DP+
Sbjct:  560 GNFLRTPDGRLCMLDFGLVTEIEEDQRLALVEYVAHLSAKDYNATLGDLCRLGFIPKEVYEDPQ 623          
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Match: W7U1Q9_9STRA (Unusual protein kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Q9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.440e-21
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    7 GNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLNDLIILGFIPKEIGDDPKK 201
            GNFL TPDGRL +LD GL+TE+  D+R AL+EYV+HLTA+D+EAT+ DL+ LGFIP+EI DD KK
Sbjct:  616 GNFLVTPDGRLAILDHGLVTEIDADRRLALIEYVAHLTAQDWEATVCDLVRLGFIPQEIADDKKK 680          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48908.12062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY88_9PHAE6.180e-3290.77ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5E1_9STRA1.460e-2884.62Protein kinase:ABC1 family n=1 Tax=Tribonema minus... [more]
A0A7S2V6P2_9STRA1.660e-2472.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1JC13_9EUGL3.080e-2470.77Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1JAV4_9EUGL3.090e-2470.77Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4D969_HETAK1.460e-2372.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FSM3_ECTSI5.090e-2373.85ABC1-like n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A0G4ES84_VITBC6.950e-2372.31Protein kinase domain-containing protein n=2 Tax=V... [more]
A0A0G4GGM9_VITBC6.960e-2371.88Protein kinase domain-containing protein n=2 Tax=V... [more]
W7U1Q9_9STRA5.440e-2167.69Unusual protein kinase n=2 Tax=Monodopsidaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48908contigH-elongata_contig48908:324..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue4e-27
Seed eggNOG ortholog2880.D8LK12
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.8319714-CDS-H-elongata_contig48908:323..4551622930804.8319714-CDS-H-elongata_contig48908:323..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48908 324..455 -
1691679577.6548605-CDS-H-elongata_contig48908:323..4551691679577.6548605-CDS-H-elongata_contig48908:323..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48908 324..455 -
1622930804.8454344-CDS-H-elongata_contig48908:1144..12131622930804.8454344-CDS-H-elongata_contig48908:1144..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48908 1145..1213 -
1691679577.6669157-CDS-H-elongata_contig48908:1144..12131691679577.6669157-CDS-H-elongata_contig48908:1144..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48908 1145..1213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48908.12062.1prot_H-elongata_contig48908.12062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48908 324..1213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48908.12062.1

>prot_H-elongata_contig48908.12062.1 ID=prot_H-elongata_contig48908.12062.1|Name=mRNA_H-elongata_contig48908.12062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MQGNFLCTPDGRLCVLDMGLMTEVAEDQRYALLEYVSHLTAKDYEATLND
LIILGFIPKEIGDDPKK
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mRNA from alignment at H-elongata_contig48908:324..1213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48908.12062.1 ID=mRNA_H-elongata_contig48908.12062.1|Name=mRNA_H-elongata_contig48908.12062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=890bp|location=Sequence derived from alignment at H-elongata_contig48908:324..1213- (Himanthalia elongata Himel1 dioecious)
ATGCAGGGGAACTTCCTCTGCACGCCGGACGGGAGACTGTGCGTTCTCGA CATGGGTCTCATGACCGAGGTGCTTTGCTTTGCAGTAATAGTATTTATAG TACGTGGATCTCGTCACTCGTAGAGCCCATCAATAGCTGTGCCTGCGGTA TTCCCGAGGGTGAATGACAGTCTCATGACAGTCTTGCTAGCTCGATTGAT ACTGCTGGGGAGCACGCCGAGGTCGGTACTGCATTGAAATCTGCATCGGT TACAGCATCGATCATTGTATCGATTACTGCATTGATTACTGCATTAATTA CTGTATTTATTACTGTGATTATTCCATCGATTACTGCATTGCTTACTGTA TATATTACTGTATATATTACTGTATTGATTACTGCATTAATTACTGCATT GATTACTGTATCGATTTCTGTATCGATTACTGCATCGATTACTGCATTAA TTACTGCATCGATTATTCGAGAATAAAAAATCGTACGGTAGCACCACGCC GGCATACATCGATACTTACAGATATTAAATACCAGGTAGTTGATAACAGG TTCATGGGAAAATATGTACGACAGCTCGATCGGCGATAGGTCACAAGTCC CCTATGAGACCCCCCCCCCAACTCCCCCCATTCAACTTCACTACCAACCC CTCTTCCACCTGTCGTTGTCTACCAAACCCGTCTATACACGCTGATGTGC CTCGTGGTTCATGTGTCCCGTGGGCGTGTGGCATATGCCCCTGCCGCCAT GTTCACAGGTTGCCGAGGACCAACGGTACGCCCTGCTGGAGTACGTGTCT CACCTGACCGCCAAGGATTACGAGGCGACGCTGAACGACCTAATCATCCT AGGGTTCATTCCGAAGGAGATCGGAGACGATCCGAAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig48908:324..1213-

>mRNA_H-elongata_contig48908.12062.1 ID=mRNA_H-elongata_contig48908.12062.1|Name=mRNA_H-elongata_contig48908.12062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig48908:324..1213- (Himanthalia elongata Himel1 dioecious)
ATGCAGGGGAACTTCCTCTGCACGCCGGACGGGAGACTGTGCGTTCTCGA
CATGGGTCTCATGACCGAGATGCAGGGGAACTTCCTCTGCACGCCGGACG
GGAGACTGTGCGTTCTCGACATGGGTCTCATGACCGAGGTTGCCGAGGAC
CAACGGTACGCCCTGCTGGAGTACGTGTCTCACCTGACCGCCAAGGATTA
CGAGGCGACGCTGAACGACCTAATCATCCTAGGGTTCATTCCGAAGGAGA
TCGGAGACGATCCGAAAAAGGTTGCCGAGGACCAACGGTACGCCCTGCTG
GAGTACGTGTCTCACCTGACCGCCAAGGATTACGAGGCGACGCTGAACGA
CCTAATCATCCTAGGGTTCATTCCGAAGGAGATCGGAGACGATCCGAAAA
AG
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