mRNA_H-elongata_contig48495.12006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48495.12006.1
Unique NamemRNA_H-elongata_contig48495.12006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 207 bits (528), Expect = 1.670e-58
Identity = 124/349 (35.53%), Postives = 190/349 (54.44%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQ---------------------------LEAKGFQRSQADLCVFRWILH--GVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKT-SIIPSVAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            +P ++ EA  S+EWP+WK AI +EM    + G + +V+ PK   ++G++ VF+ K + +  IE YK RLVAQGF QV GI + ++ +     ASI ++L + A   WE  Q+DV  AYL  ++EEEIY++ P    +  K+                           L + G  RS+ D CVF W+ +   V+++ I + VDD  +A  TK       RE+ + F ++DL    + LG  + RDR+V TL+  QH YI  +  RF +    S+   +  G  LS    P T  + E+M+ IPYRE++G+L++AA  TRPDI++A   L +F  NPG  HW AA++  +
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFR 457          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 203 bits (517), Expect = 3.520e-55
Identity = 124/349 (35.53%), Postives = 188/349 (53.87%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQ---------------------------LEAKGFQRSQADLCVFRWILH--GVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKT-SIIPSVAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            +P ++ EA  S+EWP+WK AIA+EM    + G + +V+ PK   ++G++ VF+ K + +  IE YK RLVAQGF QV GI + ++ +     ASIR++L + A   WE  Q+DV  AYL  ++EEEIY+  P    +  K+                           L + G  RS+ D CVF W+ +   V+++ I + VDD  +A  TK       RE+ + F ++DL    + LG  + RDR+  TL+  Q  YI  +  RF +    S+   +  G  LS    P T  + E+M+ IPYRE +G+L++AA  TRPDI++A   L +F  NPG  HW AA++  +
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFR 1267          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA)

HSP 1 Score: 188 bits (477), Expect = 8.740e-54
Identity = 119/332 (35.84%), Postives = 174/332 (52.41%), Query Frame = 1
Query:   28 ASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELP---EAYRDSRKQLE----------------------AKGFQRSQADLCVF-RWILHGVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKTSIIPS-VAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAA 942
            AS +  QW+ A+  E+      G W +V R      +G R VF +K D+  R+ +YK RLVA+GF+Q  GI + ++ S      SIR+VL + AA  +   QLD D A+L +E+++ +Y+E+P   E  RD + QL                         GF+   AD CV+ +   +G + V +  YVDD+++A+ T  D ++    L + F + +L  A + LG  I  D   GTL   Q +YI  + +RFG      + +  A G  LSK  SP TDAE   MR  PYR ++G L++  T TRPDI+F A QL +F +NPG  HW AA
Sbjct:    2 ASDDAAQWREAMDAELLSHERNGTWTLVPRGTANRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCL--YVDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFGQENAKPVDNPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENPGQQHWNAA 331          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 192 bits (487), Expect = 3.620e-53
Identity = 130/352 (36.93%), Postives = 185/352 (52.56%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELP-----------------------EAYRDSRKQLEAK----GFQRSQADLCVFRWILHG----VVVVAIVVYVDDLLVASATKRDEKQAVRELCSC-FPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKT-SIIPSVAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            EP T+ EA+AS EWPQW+ AI  E+      G W++ ++P G  V+G+  VFK K D    I KYK RLVAQGF Q+ G+ Y  + +     +SIR++  + A   WE  Q+DV  AYL  ++EEEI+++ P                       +A R   K+L A     GF RS  D  VF    HG    + +VA  V VDDL +A A   DE   ++      F +TDL    + LG  I RDR   T++  Q  YI T+  RF +    S+  ++    SL+   SP T  + ++MR I YRE +G+L++AA  TRPD+S+A   L +F  NPG  HW AA++ ++
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVF--FRHGPNGEIAIVA--VSVDDLAIA-ANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMR 375          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A5N6M1Y8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Y8_9ASTR)

HSP 1 Score: 190 bits (482), Expect = 3.640e-52
Identity = 113/349 (32.38%), Postives = 190/349 (54.44%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQ---------------------------LEAKGFQRSQADLCVFRWILHGVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKTSIIPSVAG---GKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            +PTT  +A    +  QW  A+  E+       VW + + P G   +G + V+K K+D +  IE+YK RLVA+G+ Q +GI Y+++ S    + S+R+V+ ++A    E  Q+DV  A+L  ++ E+++++ PE +    K+                           ++   F ++Q D C++  I  G   V +V+YVDD+L+AS       ++ R L + F + DL  ASY +G  I R+R++GTL   Q  YI+ + +RF + + S  PSVA    G +      P+++AE+++MR IPY  +VG+L++A   TRPDI++    L ++  NPG  HW+AA+K L+
Sbjct:  109 DPTTFKDAMNCDQSTQWLDAMKDELKSMKTNNVWTLTELPTGAKPVGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNPGLDHWKAAKKVLR 454          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 194 bits (494), Expect = 4.000e-52
Identity = 121/349 (34.67%), Postives = 185/349 (53.01%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQ---------------------------LEAKGFQRSQADLCVFRWILH--GVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKT-SIIPSVAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            +P ++ EA  S+EWP+W  AIA+EM    + G + +V+ PK   ++G++ VF+ K + +  IE YK RLVAQGF QV GI + ++ +     ASIR++L + A   WE  Q+DV   YL  ++EEEIY+  P    +  K+                           L + G  RS+ D C+F W+ +   V+++ I + VDD  +A  TK       RE+   F ++DL    + LG  + RDR+  TL+  Q  YI  +  RF +    S+   +  G  LS    P T  + E+M+ IPYRE +G+L++AA  TRPDI++A   L +F  NPG  HW AA++  +
Sbjct:  744 DPASLNEAMQSTEWPKWTEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCIF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISMHFEMSDLGEMHWILGIEVRRDRDARTLSLSQCAYIDMILARFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMKNPGRPHWEAAKRVFR 1090          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A2N9E297_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9E297_FAGSY)

HSP 1 Score: 191 bits (485), Expect = 3.320e-51
Identity = 115/323 (35.60%), Postives = 176/323 (54.49%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAY---RDSRKQLEAKGFQRSQADLCVFRWILHGVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKTSIIPSVAG-GKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            EP +  EA +S    +W  A+  E +      VW++V  P G+  +G + V K K   D  I+KYK RLVA+G+ Q KG+ YEK+ S     +SI ++L M+A+L  E  Q+DV  A+L  E++EEI+++ P  +      RK++ + GF   + D CV+     G  ++ + +Y DD+L+    K   K     L S F + D+  AS+ LG  I RDR+   L   Q  YI+ + ERF +     I +  G   SLS    P+T AE+E M ++PY   +G+L++A   TRPDI FA   + +F  N GP HW+A ++ L+
Sbjct:  394 EPRSYDEAMSSPACNEWMTAMKEENESMRTNQVWELVDLPPGRKSIGNKWVLKIKRKADGSIDKYKARLVAKGYTQKKGVDYEKTFSPVVRFSSIHLILAMVASLNLELHQMDVKTAFLNGELDEEIFIDQPIGFVVKGQKRKEVISNGFLMIEEDHCVYVKRSKGSFII-LSLYADDILLIGNNKEFIKTIKEWLSSTFEMKDMGEASFVLGVKILRDRSRKLLGLSQETYIRKVLERFHMQDCKPIDTPVGKSDSLSSEMCPKTQAEIESMARVPYANAIGSLMYAMLCTRPDICFAVGLVNRFQSNRGPAHWKAVKRILR 715          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 192 bits (487), Expect = 3.600e-51
Identity = 123/348 (35.34%), Postives = 187/348 (53.74%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQ---------------------------LEAKGFQRSQADLCVFRWILHGVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKTSI--IPSVAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            +P++  +A  SS+  +W  A+  E+       VW +V  P G   +G + VFK K D   +IE+YK RLVA+GF Q +GI Y+++ S    + S R+V+ ++A   +E  Q+DV  A+L  ++ E++Y+  P  ++ S K+                           + + GF+ +  D C++  I  G  ++ +V+YVDD+L+AS      ++  R L   F + DL  AS+ LG  I RDR+ G L   Q  YI  + ERF ++  S    P V G K LSKL  PQ D E  EM++IPY   VG+L++A   TRPDI+FA   L +F  +PG  HWRAA+K L+
Sbjct:  479 DPSSYSQAIQSSQSTKWIDAMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGIDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPNGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCSAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLR 824          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 184 bits (466), Expect = 3.850e-51
Identity = 109/347 (31.41%), Postives = 183/347 (52.74%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQ---------------------------LEAKGFQRSQADLCVFRWILHGVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKTS-IIPSVAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            +P++  EA  S +  +W  A+  E++      VW++V+   G   +G + V+K K+D +  +E++K RLVA+G+ Q +GI Y+++ S    + S+R+V+ ++A    E  Q+DV  A+L  E+ E++Y+  PE ++   K+                           ++  GF  +Q D C +   + G     +V+YVDD+L+AS +     ++ R L S F + DL  ASY +G  I RDR  GTL   Q  YI  +  R+ +   S ++  V  G        P+T+ E E+MR IPY  +VG++++A   TRPDI++ A  L ++  NPG  HW+A +K L+
Sbjct:   35 DPSSYNEAITSDQSSEWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLR 380          
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Match: A0A401H1G1_9APHY (Integrase catalytic domain-containing protein n=7 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H1G1_9APHY)

HSP 1 Score: 191 bits (486), Expect = 4.800e-51
Identity = 117/346 (33.82%), Postives = 181/346 (52.31%), Query Frame = 1
Query:    1 EPTTMGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKRKIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAALGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQLEAK--------------------------GFQRSQADLCVFRWILHGVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRGASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKT-SIIPSVAGGKSLSKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFNDNPGPTHWRAAQKALK 957
            +P T  +A  S +  +W++A   E+    A   W +V  P GK  +G+  VFK K + D  +E+YK RLVA+G+ Q  G  Y +  + T  Q ++R++L + AA   E   +D+  A+L  ++EEEIY++ PE +     ++  +                          GF R Q+D  ++ +I   V ++ + V++DD+ +AS +K+     V+EL S F + DL    + LG  I RDR   T++  Q QYI  M ER+G++   S+   +  G  LSK  +PQT  E E M ++PY   VGAL++ A  TRPDI FA   L +FN NPGP HW A +   +
Sbjct:  883 DPRTYKQAMGSPDADKWQQAANEEIVSLMANNTWDIVPLPPGKRAIGSGWVFKVKHNADGSVERYKGRLVAKGYSQRPGFDYTEVFAPTFRQPALRLILALAAAEDLELHSVDISSAFLNGDLEEEIYMQQPEGFHQGGPEMVCRLNKSLYGLKQGARQWNKKLHEVLTKMGFTRLQSDRSIYVYIREDVRII-VPVFIDDMTLASKSKKALDDTVKELKSYFKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLERYGLSDCKSVSTPMNPGAELSKALAPQTQEEAEYMHKVPYLSAVGALMYLAITTRPDIMFAIGCLARFNANPGPAHWIAVKHVFR 1227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48495.12006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GP19_9APHY1.670e-5835.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GN13_9APHY3.520e-5535.53Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A6A3JRZ2_9STRA8.740e-5435.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZVS1_9AGAM3.620e-5336.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6M1Y8_9ASTR3.640e-5232.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H6Z2_9APHY4.000e-5234.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9E297_FAGSY3.320e-5135.60Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HDZ1_FAGSY3.600e-5135.34RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A5N6NCI1_9ASTR3.850e-5131.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H1G1_9APHY4.800e-5133.82Integrase catalytic domain-containing protein n=7 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48495contigH-elongata_contig48495:476..1507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score181.0
Seed ortholog evalue8.5e-43
Seed eggNOG ortholog37682.EMT12132
Preferred nameEIF3A
KEGG koko:K03254
KEGG Pathwayko03013,map03013
GOsGO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0005886,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
EggNOG OGs37Q3Y@33090,3GCXB@35493,3IB7X@38820,3KQFG@4447,COG0513@1,COG2801@1,KOG0017@2759,KOG0342@2759,KOG2072@1,KOG2072@2759
COG Functional cat.J
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size957
Cds size945
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48495.12006.1prot_H-elongata_contig48495.12006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48495 476..1495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930798.9573586-CDS-H-elongata_contig48495:475..10091622930798.9573586-CDS-H-elongata_contig48495:475..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48495 476..1009 -
1691679575.2374368-CDS-H-elongata_contig48495:475..10091691679575.2374368-CDS-H-elongata_contig48495:475..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48495 476..1009 -
1622930798.9732647-CDS-H-elongata_contig48495:1084..14951622930798.9732647-CDS-H-elongata_contig48495:1084..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48495 1085..1495 -
1691679575.252291-CDS-H-elongata_contig48495:1084..14951691679575.252291-CDS-H-elongata_contig48495:1084..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48495 1085..1495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930798.9945877-UTR-H-elongata_contig48495:1495..15071622930798.9945877-UTR-H-elongata_contig48495:1495..1507Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48495 1496..1507 -
1691679575.2669833-UTR-H-elongata_contig48495:1495..15071691679575.2669833-UTR-H-elongata_contig48495:1495..1507Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48495 1496..1507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48495.12006.1

>prot_H-elongata_contig48495.12006.1 ID=prot_H-elongata_contig48495.12006.1|Name=mRNA_H-elongata_contig48495.12006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp
MGEAQASSEWPQWKRAIAREMDGKTARGVWQVVQRPKGKTVLGTRVVFKR
KIDKDERIEKYKCRLVAQGFRQVKGIHYEKSSSRTPVQASIRMVLGMIAA
LGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKQLEAKGFQRSQADL
CVFRWILHGVVVVAIVVYVDDLLVASATKRDEKQAVRELCSCFPITDLRG
ASYYLGCHITRDRNVGTLTFDQHQYIQTMAERFGVTKTSIIPSVAGGKSL
SKLDSPQTDAEVEEMRQIPYREIVGALVWAATMTRPDISFAAHQLEKFND
NPGPTHWRAAQKALK
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mRNA from alignment at H-elongata_contig48495:476..1507-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48495.12006.1 ID=mRNA_H-elongata_contig48495.12006.1|Name=mRNA_H-elongata_contig48495.12006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-elongata_contig48495:476..1507- (Himanthalia elongata Himel1 dioecious)
GAGCCGACAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATG GAAAAGGGCGATCGCGCGCGAGATGGATGGGAAAACTGCTCGAGGCGTAT GGCAGGTGGTGCAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTA GTTTTCAAGCGCAAAATCGACAAGGATGAAAGGATCGAGAAGTACAAATG TCGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACATTACGAGA AATCCTCCTCTCGGACTCCTGTGCAGGCCAGCATTAGAATGGTACTGGGC ATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGC CTACCTGGAGGCCGAAGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGG CATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTAC GGACTCGTCCACGCCGGGCTGCCGTGGTAAAAACAGTTCGGGATCGAGCT CGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCTATGCGTGTTCCGGT GGATTCTCCACGGGGTAGTGGTAGTCGCTATTGTGGTCTACGTCGACGAC CTGCTGGTTGCTAGTGCGACGAAACGTGACGAGAAGCAAGCGGTCAGGGA ACTGTGCTCCTGTTTCCCCATCACGGATCTGAGGGGGGCTTCGTATTACC TGGGATGCCACATCACGCGGGACCGGAACGTCGGGACACTGACGTTCGAC CAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGTGACGAAGAC CAGCATCATTCCGTCCGTGGCAGGAGGAAAATCCCTTTCGAAATTAGACA GCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCCCTACCGA GAAATCGTTGGGGCGCTAGTGTGGGCAGCGACGATGACCAGGCCCGACAT TTCATTCGCTGCGCACCAACTGGAAAAATTCAACGACAATCCGGGACCGA CACACTGGAGGGCAGCCCAGAAAGCGCTGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig48495:476..1507-

>mRNA_H-elongata_contig48495.12006.1 ID=mRNA_H-elongata_contig48495.12006.1|Name=mRNA_H-elongata_contig48495.12006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig48495:476..1507- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGAAAACTGCTCGAGGCGTATGGCAGGTGGTGC
AGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGC
AAAATCGACAAGGATGAAAGGATCGAGAAGTACAAATGTCGCCTCGTGGC
GCAGGGTTTCAGGCAGGTCAAAGGCATACATTACGAGAAATCCTCCTCTC
GGACTCCTGTGCAGGCCAGCATTAGAATGGTACTGGGCATGATCGCGGCT
CTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGC
CGAAGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGACT
CCAGGAAGCAAATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCACAATGG
AAAAGGGCGATCGCGCGCGAGATGGATGGGAAAACTGCTCGAGGCGTATG
GCAGGTGGTGCAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAG
TTTTCAAGCGCAAAATCGACAAGGATGAAAGGATCGAGAAGTACAAATGT
CGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACATTACGAGAA
ATCCTCCTCTCGGACTCCTGTGCAGGCCAGCATTAGAATGGTACTGGGCA
TGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCC
TACCTGGAGGCCGAAGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGC
ATACCGTGACTCCAGGAAGCAACTCGAGGCGAAGGGTTTCCAGAGATCTC
AAGCCGACCTATGCGTGTTCCGGTGGATTCTCCACGGGGTAGTGGTAGTC
GCTATTGTGGTCTACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACG
TGACGAGAAGCAAGCGGTCAGGGAACTGTGCTCCTGTTTCCCCATCACGG
ATCTGAGGGGGGCTTCGTATTACCTGGGATGCCACATCACGCGGGACCGG
AACGTCGGGACACTGACGTTCGACCAGCATCAGTACATACAGACTATGGC
GGAACGTTTTGGCGTGACGAAGACCAGCATCATTCCGTCCGTGGCAGGAG
GAAAATCCCTTTCGAAATTAGACAGCCCGCAAACGGACGCAGAGGTTGAA
GAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGGCGCTAGTGTGGGC
AGCGACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGAAA
AATTCAACGACAATCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCG
CTGAAACTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCTATGCGT
GTTCCGGTGGATTCTCCACGGGGTAGTGGTAGTCGCTATTGTGGTCTACG
TCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGAAGCAAGCG
GTCAGGGAACTGTGCTCCTGTTTCCCCATCACGGATCTGAGGGGGGCTTC
GTATTACCTGGGATGCCACATCACGCGGGACCGGAACGTCGGGACACTGA
CGTTCGACCAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGTG
ACGAAGACCAGCATCATTCCGTCCGTGGCAGGAGGAAAATCCCTTTCGAA
ATTAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTC
CCTACCGAGAAATCGTTGGGGCGCTAGTGTGGGCAGCGACGATGACCAGG
CCCGACATTTCATTCGCTGCGCACCAACTGGAAAAATTCAACGACAATCC
GGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGAAA
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