mRNA_H-elongata_contig48334.11984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48334.11984.1
Unique NamemRNA_H-elongata_contig48334.11984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48334.11984.1 vs. uniprot
Match: D7FHB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB4_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 5.940e-135
Identity = 190/242 (78.51%), Postives = 214/242 (88.43%), Query Frame = 1 
Query:    1 MTWVTAHAPKPMENIWYESKELTMKLRDVAWQGGRGAFWPPFPAVESWFRIAGDIARQRDAPLLLSVLEFKRYALRIASASALIAYNPDDYSLLVRSVYDLGVLARWTHGWSGRLSCYSSLWTPGNVGMALLGGLTLLAIRRNVASNDAVRCLLVGIASENIMARYMHDKVRAARTEELAKRYSRNQGKTCRGSGVKCVRLACEKLGLPLSSSQLDGAVAFAVGWAKEAVEGLPGNQKPRDG 726
            MTW+TAH+PKPMENIWYESKEL M L +++ Q  RGA WP FP +ESWFRIA DIARQRD+PLLLSV EFKR+ALRIAS+SAL+AYNP +Y  LV SVY+LG+LARWTHGWSGRLSCYS+LWTPGNVGMALLGGLTLL IR+NV + D+VRCLLVG+AS+ IM RY+ DKVRAART+ELA RYS N+GKTCRGSGVKCVR AC KLGLP S+SQLDGAVAFAVGWA EA+EGLPGNQ PRDG
Sbjct:  145 MTWITAHSPKPMENIWYESKELMMTLHEISGQNARGAVWPSFPGIESWFRIAKDIARQRDSPLLLSVFEFKRFALRIASSSALLAYNPGEYDNLVTSVYNLGILARWTHGWSGRLSCYSALWTPGNVGMALLGGLTLLVIRKNVVT-DSVRCLLVGMASDTIMGRYLPDKVRAARTKELAYRYSNNKGKTCRGSGVKCVRKACVKLGLPPSASQLDGAVAFAVGWAMEAIEGLPGNQAPRDG 385
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BLAST of mRNA_H-elongata_contig48334.11984.1 vs. uniprot
Match: R7QMQ2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMQ2_CHOCR)

HSP 1 Score: 176 bits (445), Expect = 7.140e-49
Identity = 100/266 (37.59%), Postives = 144/266 (54.14%), Query Frame = 1 
Query:   13 TAHAPKPMENIWYESKELTMKLRDVAWQGGRGAFWPP--FPAVESWFRIAGDIARQRDAPLLLSVLEFKRYALRIASASALIAYNPDDYSLLVRSVYDLGVLARWTHGWSGRLSCYSSLWTPGNVGMALLGGLTLLAIR--RNVASNDA-VRCLLVGIASENIMARYMHDKVRAARTEELAKRYSRNQGKTCRGSGVKCVRLACEKLGLPLSSSQLDGAVAFAVGWAKEAVEGLPGNQKPRDGNDHNQVEDIFCSSRAYRFTDERL 795
            T   P  M ++WY +        + A +  + + +    FP+  SW  IA D+      P+ LS      +A  +ASAS ++   P+ Y  LV  +Y+ G+ ARWT GWSG L+C++ LWT   + +A+L GL+LLA+   + V   D  VR +L G A+  +  R +  ++   R  EL +RY+   GKTCRGSGV   RLAC  L +P  +S +DG  AFA GWA E +E  PGNQKP  G  H+ VE    SS A+R+    +
Sbjct:  155 TRFPPNRMSSLWYTTARFEELYEEKAQEVRKMSEFRDVLFPSWTSWLNIAQDVGTHLSRPVYLSDSYLINFAGELASASLIVVRYPEKYRKLVDQIYEDGLDARWTFGWSGLLACFTQLWTKERIHIAMLNGLSLLALNSGQEVEHIDPNVRSMLYGYAAFAVSTRAVGKRIAEDRKVELLRRYTTESGKTCRGSGVCATRLACSILKIPAEASHMDGLPAFATGWASEYMEFKPGNQKPEHGESHDDVEMKHGSSNAWRYPHSHI 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48334.11984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHB4_ECTSI5.940e-13578.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
R7QMQ2_CHOCR7.140e-4937.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48334contigH-elongata_contig48334:1333..2130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size798
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.4918027-CDS-H-elongata_contig48334:1332..21301622930796.4918027-CDS-H-elongata_contig48334:1332..2130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48334 1333..2130 -
1691679574.0934682-CDS-H-elongata_contig48334:1332..21301691679574.0934682-CDS-H-elongata_contig48334:1332..2130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48334 1333..2130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48334.11984.1prot_H-elongata_contig48334.11984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48334 1333..2130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48334.11984.1

>prot_H-elongata_contig48334.11984.1 ID=prot_H-elongata_contig48334.11984.1|Name=mRNA_H-elongata_contig48334.11984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MTWVTAHAPKPMENIWYESKELTMKLRDVAWQGGRGAFWPPFPAVESWFR
IAGDIARQRDAPLLLSVLEFKRYALRIASASALIAYNPDDYSLLVRSVYD
LGVLARWTHGWSGRLSCYSSLWTPGNVGMALLGGLTLLAIRRNVASNDAV
RCLLVGIASENIMARYMHDKVRAARTEELAKRYSRNQGKTCRGSGVKCVR
LACEKLGLPLSSSQLDGAVAFAVGWAKEAVEGLPGNQKPRDGNDHNQVED
IFCSSRAYRFTDERL*
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mRNA from alignment at H-elongata_contig48334:1333..2130-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48334.11984.1 ID=mRNA_H-elongata_contig48334.11984.1|Name=mRNA_H-elongata_contig48334.11984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig48334:1333..2130- (Himanthalia elongata Himel1 dioecious)
ATGACCTGGGTCACGGCGCACGCTCCCAAGCCCATGGAGAACATATGGTA
CGAATCGAAGGAACTTACGATGAAACTGCGAGACGTCGCCTGGCAGGGCG
GTAGGGGGGCATTCTGGCCGCCTTTCCCCGCCGTGGAGAGCTGGTTCCGC
ATCGCGGGTGATATTGCCCGTCAGCGGGATGCGCCGCTGTTGCTGAGCGT
TCTCGAGTTCAAACGGTACGCCCTGCGCATCGCGTCAGCCTCCGCTCTGA
TAGCTTACAACCCCGACGATTACAGCTTGTTGGTGAGGTCGGTCTACGAC
CTCGGGGTGTTAGCGAGATGGACCCACGGATGGTCTGGGCGCCTCTCGTG
CTACTCGTCCCTGTGGACGCCGGGCAACGTCGGCATGGCGCTTCTCGGGG
GCCTGACACTGCTCGCGATCCGGAGAAACGTCGCAAGCAACGATGCGGTC
CGATGTCTCCTGGTGGGCATCGCCTCAGAGAATATAATGGCGCGATACAT
GCACGATAAGGTCCGCGCCGCCCGAACTGAAGAGCTTGCCAAGAGGTACT
CTCGTAACCAAGGCAAAACGTGCCGCGGCAGTGGCGTCAAGTGCGTGCGC
CTGGCGTGCGAGAAGCTCGGGCTCCCTCTGTCGTCAAGCCAGCTTGACGG
CGCCGTGGCGTTTGCGGTGGGGTGGGCAAAAGAGGCCGTCGAGGGTCTAC
CAGGGAACCAAAAGCCCAGAGACGGCAATGACCATAATCAGGTCGAGGAT
ATATTCTGCTCTAGCCGAGCTTACCGTTTCACGGATGAGAGGCTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig48334:1333..2130-

>mRNA_H-elongata_contig48334.11984.1 ID=mRNA_H-elongata_contig48334.11984.1|Name=mRNA_H-elongata_contig48334.11984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig48334:1333..2130- (Himanthalia elongata Himel1 dioecious)
ATGACCTGGGTCACGGCGCACGCTCCCAAGCCCATGGAGAACATATGGTA
CGAATCGAAGGAACTTACGATGAAACTGCGAGACGTCGCCTGGCAGGGCG
GTAGGGGGGCATTCTGGCCGCCTTTCCCCGCCGTGGAGAGCTGGTTCCGC
ATCGCGGGTGATATTGCCCGTCAGCGGGATGCGCCGCTGTTGCTGAGCGT
TCTCGAGTTCAAACGGTACGCCCTGCGCATCGCGTCAGCCTCCGCTCTGA
TAGCTTACAACCCCGACGATTACAGCTTGTTGGTGAGGTCGGTCTACGAC
CTCGGGGTGTTAGCGAGATGGACCCACGGATGGTCTGGGCGCCTCTCGTG
CTACTCGTCCCTGTGGACGCCGGGCAACGTCGGCATGGCGCTTCTCGGGG
GCCTGACACTGCTCGCGATCCGGAGAAACGTCGCAAGCAACGATGCGGTC
CGATGTCTCCTGGTGGGCATCGCCTCAGAGAATATAATGGCGCGATACAT
GCACGATAAGGTCCGCGCCGCCCGAACTGAAGAGCTTGCCAAGAGGTACT
CTCGTAACCAAGGCAAAACGTGCCGCGGCAGTGGCGTCAAGTGCGTGCGC
CTGGCGTGCGAGAAGCTCGGGCTCCCTCTGTCGTCAAGCCAGCTTGACGG
CGCCGTGGCGTTTGCGGTGGGGTGGGCAAAAGAGGCCGTCGAGGGTCTAC
CAGGGAACCAAAAGCCCAGAGACGGCAATGACCATAATCAGGTCGAGGAT
ATATTCTGCTCTAGCCGAGCTTACCGTTTCACGGATGAGAGGCTTTAGAT
GACCTGGGTCACGGCGCACGCTCCCAAGCCCATGGAGAACATATGGTACG
AATCGAAGGAACTTACGATGAAACTGCGAGACGTCGCCTGGCAGGGCGGT
AGGGGGGCATTCTGGCCGCCTTTCCCCGCCGTGGAGAGCTGGTTCCGCAT
CGCGGGTGATATTGCCCGTCAGCGGGATGCGCCGCTGTTGCTGAGCGTTC
TCGAGTTCAAACGGTACGCCCTGCGCATCGCGTCAGCCTCCGCTCTGATA
GCTTACAACCCCGACGATTACAGCTTGTTGGTGAGGTCGGTCTACGACCT
CGGGGTGTTAGCGAGATGGACCCACGGATGGTCTGGGCGCCTCTCGTGCT
ACTCGTCCCTGTGGACGCCGGGCAACGTCGGCATGGCGCTTCTCGGGGGC
CTGACACTGCTCGCGATCCGGAGAAACGTCGCAAGCAACGATGCGGTCCG
ATGTCTCCTGGTGGGCATCGCCTCAGAGAATATAATGGCGCGATACATGC
ACGATAAGGTCCGCGCCGCCCGAACTGAAGAGCTTGCCAAGAGGTACTCT
CGTAACCAAGGCAAAACGTGCCGCGGCAGTGGCGTCAAGTGCGTGCGCCT
GGCGTGCGAGAAGCTCGGGCTCCCTCTGTCGTCAAGCCAGCTTGACGGCG
CCGTGGCGTTTGCGGTGGGGTGGGCAAAAGAGGCCGTCGAGGGTCTACCA
GGGAACCAAAAGCCCAGAGACGGCAATGACCATAATCAGGTCGAGGATAT
ATTCTGCTCTAGCCGAGCTTACCGTTTCACGGATGAGAGGCTTTAG
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